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102 Publications


2004 | Journal Article | IST-REx-ID: 902
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research 14 (2004) 802–811.
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2004 | Journal Article | IST-REx-ID: 3805
Interneuron Diversity series: Fast in, fast out--temporal and spatial signal processing in hippocampal interneurons
P.M. Jonas, J. Bischofberger, D. Fricker, R. Miles, Trends in Neurosciences 27 (2004) 30–40.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity
B. Kampa, J. Clements, P.M. Jonas, G. Stuart, Journal of Physiology 556 (2004) 337–45.
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2004 | Journal Article | IST-REx-ID: 3809
Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus
C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Nature 429 (2004) 184–7.
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2004 | Journal Article | IST-REx-ID: 3810
Functional conversion between A-type and delayed rectifier K+ channels by membrane lipids
D. Oliver, C. Lien, M. Soom, T. Baukrowitz, P.M. Jonas, B. Fakler, Science 304 (2004) 265–70.
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2004 | Conference Paper | IST-REx-ID: 3894
On Nash equilibria in stochastic games
K. Chatterjee, R. Majumdar, M. Jurdziński, in:, Springer, 2004, pp. 26–40.
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2004 | Conference Paper | IST-REx-ID: 3895
Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, IEEE, 2004, pp. 160–169.
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2004 | Journal Article | IST-REx-ID: 3918
Production of winged and wingless males in the ant, Cardiocondyla minutior
J. Heinze, A. Böttcher, S. Cremer, Insectes Sociaux 51 (2004) 275–278.
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2004 | Journal Article | IST-REx-ID: 3929
HIV-1 Nef mimics an integrin receptor signal that recruits the polycomb group protein Eed to the plasma membrane
V. Witte, B. Laffert, O. Rosorius, P. Lischka, K. Blume, G. Galler, A. Stilper, D. Willbold, P. D’Aloja, M.K. Sixt, J. Kolanus, M. Ott, W. Kolanus, G. Schuler, A. Baur, Molecular Cell 13 (2004) 179–190.
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2004 | Journal Article | IST-REx-ID: 3931
Neurocan-GFP fusion protein: a new approach to detect hyaluronan on tissue sections and living cells
H. Zhang, S. Baader, M.K. Sixt, J. Kappler, U. Rauch, Journal of Histochemistry and Cytochemistry 52 (2004) 915–922.
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2004 | Journal Article | IST-REx-ID: 3984
A topological hierarchy for functions on triangulated surfaces
P. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci, IEEE Transactions on Visualization and Computer Graphics 10 (2004) 385–396.
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2004 | Journal Article | IST-REx-ID: 3985
Loops in Reeb graphs of 2-manifolds
K. Cole Mclaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci, Discrete & Computational Geometry 32 (2004) 231–244.
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2004 | Journal Article | IST-REx-ID: 3986
The area derivative of a space-filling diagram
R. Bryant, H. Edelsbrunner, P. Koehl, M. Levitt, Discrete & Computational Geometry 32 (2004) 293–308.
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2004 | Journal Article | IST-REx-ID: 3987
Simplification of three-dimensional density maps
V. Natarajan, H. Edelsbrunner, IEEE Transactions on Visualization and Computer Graphics 10 (2004) 587–597.
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2004 | Conference Paper | IST-REx-ID: 3988
Local search heuristic for rigid protein docking
V. Choi, P. Agarwal, H. Edelsbrunner, J. Rudolph, in:, Springer, 2004, pp. 218–229.
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2004 | Conference Paper | IST-REx-ID: 3989
Local and global comparison of continuous functions
H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci, in:, IEEE, 2004, pp. 275–280.
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2004 | Journal Article | IST-REx-ID: 3990
Computing the writhing number of a polygonal knot
P. Agarwal, H. Edelsbrunner, Y. Wang, Discrete & Computational Geometry 32 (2004) 37–53.
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2004 | Journal Article | IST-REx-ID: 4172
Gastrulation dynamics: cells move into focus
J. Montero, C.-P.J. Heisenberg, Trends in Cell Biology 14 (2004) 620–627.
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2004 | Journal Article | IST-REx-ID: 4224
Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model
K. Kruse, P. Pantazis, M.T. Bollenbach, F. Julicher, M. Gonzalez Gaitan, Development 131 (2004) 4843–4856.
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2004 | Book Chapter | IST-REx-ID: 4230
A mechanism for the prebiotic emergence of proteins
H. de Vladar, R. Cipriani, B. Scharifker, J. Bubis, in:, A. Hanslmeier, S. Kempe, J. Seckbach (Eds.), Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, Springer, 2004, pp. 83–87.
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2004 | Thesis | IST-REx-ID: 4236
Métodos no lineales y sus aplicaciones en dinámicas aleatorias de poblaciones celulares
H. de Vladar, Métodos No Lineales y Sus Aplicaciones En Dinámicas Aleatorias de Poblaciones Celulares, Centro de estudios avazados, IVIC, 2004.
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2004 | Journal Article | IST-REx-ID: 4238
Dynamic response of cancer under the influence of immunological activity and therapy
H. de Vladar, J. González, Journal of Theoretical Biology 227 (2004) 335–348.
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2004 | Book Chapter | IST-REx-ID: 4239
A Mechanism for the Prebiotic Emergence of Proteins
H. de Vladar, R. Cipriani, B. Scharifker, J. Bubis, in:, J. Seckbach, J. Chela Flores, T. Owen, F. Raulin (Eds.), Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, Springer, 2004, pp. 83–87.
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2004 | Journal Article | IST-REx-ID: 4253
Coalescence in a Random Background
N.H. Barton, A. Etheridge, A. Sturm, Annals of Applied Probability 14 (2004) 754–785.
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2004 | Conference Paper | IST-REx-ID: 4372
Monitoring Temporal Properties of Continuous Signals
O. Maler, D. Nickovic, in:, Springer, 2004, pp. 152–166.
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2004 | Thesis | IST-REx-ID: 4424
Program verification by lazy abstraction
R. Jhala, Program Verification by Lazy Abstraction, University of California, Berkeley, 2004.
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2004 | Conference Paper | IST-REx-ID: 4445
A typed assembly language for real-time programs
T.A. Henzinger, C. Kirsch, in:, ACM, 2004, pp. 104–113.
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2004 | Conference Paper | IST-REx-ID: 4458
Abstractions from proofs
T.A. Henzinger, R. Jhala, R. Majumdar, K. Mcmillan, in:, ACM, 2004, pp. 232–244.
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2004 | Conference Paper | IST-REx-ID: 4459
Race checking by context inference
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2004, pp. 1–13.
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2004 | Book Chapter | IST-REx-ID: 4461
Extreme model checking
T.A. Henzinger, R. Jhala, R. Majumdar, M. Sanvido, in:, Verification: Theory and Practice, Springer, 2004, pp. 332–358.
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2004 | Conference Paper | IST-REx-ID: 4525
Event-driven programming with logical execution times
A. Ghosal, T.A. Henzinger, C. Kirsch, M. Sanvido, in:, Springer, 2004, pp. 167–170.
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2004 | Conference Paper | IST-REx-ID: 4555
Trading memory for randomness
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, IEEE, 2004, pp. 206–217.
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2004 | Journal Article | IST-REx-ID: 4556
Stack size analysis for interrupt-driven programs
K. Chatterjee, D. Ma, R. Majumdar, T. Zhao, T.A. Henzinger, J. Palsberg, Information and Computation 194 (2004) 144–174.
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2004 | Conference Paper | IST-REx-ID: 4558
Quantitative stochastic parity games
K. Chatterjee, M. Jurdziński, T.A. Henzinger, in:, SIAM, 2004, pp. 121–130.
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2004 | Conference Paper | IST-REx-ID: 4577
An eclipse plug-in for model checking
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE, 2004, pp. 251–255.
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2004 | Conference Paper | IST-REx-ID: 4578
The BLAST query language for software verification
D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2004, pp. 2–18.
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2004 | Conference Paper | IST-REx-ID: 4581
Generating tests from counterexamples
D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE, 2004, pp. 326–335.
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2004 | Journal Article | IST-REx-ID: 2997
A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux
J. Friml, X. Yang, M. Michniewicz, D. Weijers, A. Quint, O. Tietz, R. Benjamins, P. Ouwerkerk, K. Ljung, G. Sandberg, P. Hooykaas, K. Palme, R. Offringa, Science 306 (2004) 862–865.
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2004 | Journal Article | IST-REx-ID: 2998
The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome
M. Duroux, A. Houben, K. Růžička, J. Friml, K. Grasser, Plant Journal 40 (2004) 660–671.
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2004 | Journal Article | IST-REx-ID: 2999
In vitro culture of Arabidopsis embryos within their ovules
M. Sauer, J. Friml, Plant Journal 40 (2004) 835–843.
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2004 | Book Review | IST-REx-ID: 3142
Control of neuronal phenotype: What targets tell the cell bodies
S. Hippenmeyer, I. Kramer, S. Arber, Trends in Neurosciences 27 (2004) 482–488.
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2004 | Journal Article | IST-REx-ID: 3172
Multiprocessor scheduling implementation of the simultaneous multiple volume SMV navigator method
V. Kolmogorov, T. Nguyen, A. Nuval, P. Spincemaille, M. Prince, R. Zabih, Y. Wang, Magnetic Resonance in Medicine 52 (2004) 362–367.
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2004 | Journal Article | IST-REx-ID: 3173
What energy functions can be minimized via graph cuts?
V. Kolmogorov, R. Zabih, IEEE Transactions on Pattern Analysis and Machine Intelligence 26 (2004) 147–159.
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2004 | Conference Paper | IST-REx-ID: 3177
Spatially coherent clustering using graph cuts
R. Zabih, V. Kolmogorov, in:, IEEE, 2004, pp. 437–444.
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2004 | Journal Article | IST-REx-ID: 3178
An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision
Y. Boykov, V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 26 (2004) 1124–1137.
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2004 | Conference Paper | IST-REx-ID: 3179
"GrabCut" - Interactive foreground extraction using iterated graph cuts
C. Rother, V. Kolmogorov, A. Blake, in:, ACM, 2004, pp. 309–314.
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2004 | Conference Paper | IST-REx-ID: 3208
Composition of random systems: When two weak make one strong
U. Maurer, K.Z. Pietrzak, in:, Springer, 2004, pp. 410–427.
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2004 | Journal Article | IST-REx-ID: 3419
Probing the energy landscape of the membrane protein bacteriorhodopsin
H.L. Janovjak, J. Struckmeier, M. Hubain, M. Kessler, A. Kedrov, D. Mueller, Structure 12 (2004) 871–879.
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2004 | Journal Article | IST-REx-ID: 3420
Controlled unfolding and refolding of a single sodium/proton antiporter using atomic force microscopy
A. Kedrov, C. Ziegler, H.L. Janovjak, W. Kühlbrandt, D. Mueller, Journal of Molecular Biology 340 (2004) 1143–1152.
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2004 | Book Chapter | IST-REx-ID: 3574
Biological applications of computational topology
H. Edelsbrunner, in:, Handbook of Discrete and Computational Geometry, CRC Press, 2004, pp. 1395–1412.
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