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111 Publications


2004 | Journal Article | IST-REx-ID: 4253
Barton, Nicholas H, Alison Etheridge, and Anja Sturm. “Coalescence in a Random Background.” Annals of Applied Probability. Institute of Mathematical Statistics, 2004.
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2004 | Book Review | IST-REx-ID: 3142
Hippenmeyer, Simon, Ina Kramer, and Silvia Arber. “Control of Neuronal Phenotype: What Targets Tell the Cell Bodies.” Trends in Neurosciences. Elsevier, 2004. https://doi.org/10.1016/j.tins.2004.05.012.
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2004 | Journal Article | IST-REx-ID: 3178
Boykov, Yuri, and Vladimir Kolmogorov. “An Experimental Comparison of Min-Cut/Max-Flow Algorithms for Energy Minimization in Vision.” IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE, 2004. https://doi.org/10.1109/TPAMI.2004.60.
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2004 | Journal Article | IST-REx-ID: 3173
Kolmogorov, Vladimir, and Ramin Zabih. “What Energy Functions Can Be Minimized via Graph Cuts? .” IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE, 2004. https://doi.org/10.1109/TPAMI.2004.1262177.
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2004 | Journal Article | IST-REx-ID: 3172
Kolmogorov, Vladimir, Thành Nguyen, Anthony Nuval, Pascal Spincemaille, Martin Prince, Ramin Zabih, and Yusu Wang. “Multiprocessor Scheduling Implementation of the Simultaneous Multiple Volume SMV Navigator Method.” Magnetic Resonance in Medicine. Wiley-Blackwell, 2004. https://doi.org/10.1002/mrm.20162.
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2004 | Conference Paper | IST-REx-ID: 3177
Zabih, Ramin, and Vladimir Kolmogorov. “Spatially Coherent Clustering Using Graph Cuts,” 2:437–44. IEEE, 2004. https://doi.org/10.1109/CVPR.2004.1315196.
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2004 | Conference Paper | IST-REx-ID: 3179
Rother, Carsten, Vladimir Kolmogorov, and Andrew Blake. “"GrabCut" - Interactive Foreground Extraction Using Iterated Graph Cuts ,” 23:309–14. ACM, 2004. https://doi.org/10.1145/1015706.1015720.
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2004 | Journal Article | IST-REx-ID: 3420
Kedrov, Alexej, Christine Ziegler, Harald L Janovjak, Werner Kühlbrandt, and Daniel Mueller. “Controlled Unfolding and Refolding of a Single Sodium/Proton Antiporter Using Atomic Force Microscopy.” Journal of Molecular Biology. Elsevier, 2004. https://doi.org/10.1016/j.jmb.2004.05.026.
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2004 | Journal Article | IST-REx-ID: 3419
Janovjak, Harald L, Jens Struckmeier, Maurice Hubain, Max Kessler, Alexej Kedrov, and Daniel Mueller. “Probing the Energy Landscape of the Membrane Protein Bacteriorhodopsin.” Structure. Cell Press, 2004. https://doi.org/10.1016/j.str.2004.03.016.
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2004 | Book Chapter | IST-REx-ID: 3575
Edelsbrunner, Herbert, and John Harer. “Jacobi Sets of Multiple Morse Functions.” In Foundations of Computational Mathematics, 312:37–57. Springer, 2004. https://doi.org/10.1017/CBO9781139106962.003.
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2004 | Book Chapter | IST-REx-ID: 3574
Edelsbrunner, Herbert. “Biological Applications of Computational Topology.” In Handbook of Discrete and Computational Geometry, 1395–1412. CRC Press, 2004.
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2004 | Book Review | IST-REx-ID: 3595
Charlesworth, Brian, and Nicholas H Barton. “Genome Size: Does Bigger Mean Worse?” Current Biology. Cell Press, 2004. https://doi.org/10.1016/j.cub.2004.02.054.
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2004 | Journal Article | IST-REx-ID: 3614
Barton, Nicholas H, and Michael Turelli. “Effects of Allele Frequency Changes on Variance Components under a General Model of Epistasis.” Evolution; International Journal of Organic Evolution. Wiley-Blackwell, 2004. https://doi.org/10.1111/j.0014-3820.2004.tb01591.x.
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2004 | Journal Article | IST-REx-ID: 3615
Turelli, Michael, and Nicholas H Barton. “Polygenic Variation Maintained by Balancing Selection: Pleiotropy, Sex-Dependent Allelic Effects and GxE Interactions.” Genetics. Genetics Society of America, 2004. https://doi.org/10.1534/genetics.166.2.1053.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
Kampa, Bjorn, John Clements, Peter M Jonas, and Greg Stuart. “Kinetics of Mg(2+) Unblock of NMDA Receptors: Implications for Spike-Timing Dependent Synaptic Plasticity.” Journal of Physiology. Wiley-Blackwell, 2004. https://doi.org/10.1113/jphysiol.2003.058842 .
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2004 | Journal Article | IST-REx-ID: 3809
Schmidt Hieber, Christoph, Peter M Jonas, and Josef Bischofberger. “Enhanced Synaptic Plasticity in Newly Generated Granule Cells of the Adult Hippocampus.” Nature. Nature Publishing Group, 2004. https://doi.org/10.1038/nature02553.
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2004 | Journal Article | IST-REx-ID: 3805
Jonas, Peter M, Josef Bischofberger, Desdemona Fricker, and Richard Miles. “Interneuron Diversity Series: Fast in, Fast out--Temporal and Spatial Signal Processing in Hippocampal Interneurons.” Trends in Neurosciences. Elsevier, 2004. https://doi.org/doi:10.1016/j.tins.2003.10.010.
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2004 | Journal Article | IST-REx-ID: 3918
Heinze, Jürgen, A. Böttcher, and Sylvia Cremer. “Production of Winged and Wingless Males in the Ant, Cardiocondyla Minutior.” Insectes Sociaux. Springer, 2004. https://doi.org/10.1007/s00040-004-0740-6.
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2004 | Conference Paper | IST-REx-ID: 3988
Choi, Vicky, Pankaj Agarwal, Herbert Edelsbrunner, and Johannes Rudolph. “Local Search Heuristic for Rigid Protein Docking,” 3240:218–29. Springer, 2004. https://doi.org/10.1007/978-3-540-30219-3_19.
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2004 | Journal Article | IST-REx-ID: 3986
Bryant, Robert, Herbert Edelsbrunner, Patrice Koehl, and Michael Levitt. “The Area Derivative of a Space-Filling Diagram.” Discrete & Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-1099-1.
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2004 | Journal Article | IST-REx-ID: 3984
Bremer, Peer, Herbert Edelsbrunner, Bernd Hamann, and Valerio Pascucci. “A Topological Hierarchy for Functions on Triangulated Surfaces.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2004. https://doi.org/10.1109/TVCG.2004.3.
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2004 | Journal Article | IST-REx-ID: 3987
Natarajan, Vijay, and Herbert Edelsbrunner. “Simplification of Three-Dimensional Density Maps.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2004. https://doi.org/10.1109/TVCG.2004.32.
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2004 | Journal Article | IST-REx-ID: 3985
Cole Mclaughlin, Kree, Herbert Edelsbrunner, John Harer, Vijay Natarajan, and Valerio Pascucci. “Loops in Reeb Graphs of 2-Manifolds.” Discrete & Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-1122-6.
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2004 | Conference Paper | IST-REx-ID: 3989
Edelsbrunner, Herbert, John Harer, Vijay Natarajan, and Valerio Pascucci. “Local and Global Comparison of Continuous Functions,” 275–80. IEEE, 2004. https://doi.org/10.1109/VISUAL.2004.68.
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2004 | Journal Article | IST-REx-ID: 4172
Montero, Juan, and Carl-Philipp J Heisenberg. “Gastrulation Dynamics: Cells Move into Focus.” Trends in Cell Biology. Cell Press, 2004. https://doi.org/10.1016/j.tcb.2004.09.008.
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2004 | Journal Article | IST-REx-ID: 4238
Vladar, Harold de, and J. González. “Dynamic Response of Cancer under the Influence of Immunological Activity and Therapy.” Journal of Theoretical Biology. Elsevier, 2004. https://doi.org/3801.
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2004 | Book Chapter | IST-REx-ID: 4230
Vladar, Harold de, Roberto Cipriani, Benjamin Scharifker, and Jose Bubis. “A Mechanism for the Prebiotic Emergence of Proteins.” In Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, edited by A. Hanslmeier, S. Kempe, and J. Seckbach, 83–87. Springer, 2004.
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2004 | Thesis | IST-REx-ID: 4236
Vladar, Harold de. “Métodos No Lineales y Sus Aplicaciones En Dinámicas Aleatorias de Poblaciones Celulares.” Centro de estudios avazados, IVIC, 2004. https://doi.org/3810.
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2004 | Conference Paper | IST-REx-ID: 4372
Maler, Oded, and Dejan Nickovic. “Monitoring Temporal Properties of Continuous Signals,” 152–66. Springer, 2004. https://doi.org/1572.
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2004 | Thesis | IST-REx-ID: 4424
Jhala, Ranjit. “Program Verification by Lazy Abstraction.” University of California, Berkeley, 2004.
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2004 | Conference Paper | IST-REx-ID: 4445
Henzinger, Thomas A, and Christoph Kirsch. “A Typed Assembly Language for Real-Time Programs,” 104–13. ACM, 2004. https://doi.org/10.1145/1017753.1017774.
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2004 | Conference Paper | IST-REx-ID: 4458
Henzinger, Thomas A, Ranjit Jhala, Ritankar Majumdar, and Kenneth Mcmillan. “Abstractions from Proofs,” 232–44. ACM, 2004. https://doi.org/10.1145/964001.964021.
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2004 | Book Chapter | IST-REx-ID: 4461
Henzinger, Thomas A, Ranjit Jhala, Ritankar Majumdar, and Marco Sanvido. “Extreme Model Checking.” In Verification: Theory and Practice, 2772:332–58. Springer, 2004. https://doi.org/10.1007/978-3-540-39910-0_16.
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2004 | Conference Paper | IST-REx-ID: 4459
Henzinger, Thomas A, Ranjit Jhala, and Ritankar Majumdar. “Race Checking by Context Inference,” 1–13. ACM, 2004. https://doi.org/10.1145/996841.996844.
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2004 | Conference Paper | IST-REx-ID: 4525
Ghosal, Arkadeb, Thomas A Henzinger, Christoph Kirsch, and Marco Sanvido. “Event-Driven Programming with Logical Execution Times,” 2993:167–70. Springer, 2004. https://doi.org/10.1007/978-3-540-24743-2_24.
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2004 | Conference Paper | IST-REx-ID: 4555
Chatterjee, Krishnendu, Luca De Alfaro, and Thomas A Henzinger. “Trading Memory for Randomness,” 206–17. IEEE, 2004. https://doi.org/10.1109/QEST.2004.10051.
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2004 | Conference Paper | IST-REx-ID: 4558
Chatterjee, Krishnendu, Marcin Jurdziński, and Thomas A Henzinger. “Quantitative Stochastic Parity Games,” 121–30. SIAM, 2004.
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2004 | Journal Article | IST-REx-ID: 4556
Chatterjee, Krishnendu, Di Ma, Ritankar Majumdar, Tian Zhao, Thomas A Henzinger, and Jens Palsberg. “Stack Size Analysis for Interrupt-Driven Programs.” Information and Computation. Elsevier, 2004. https://doi.org/10.1016/j.ic.2004.06.001.
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2004 | Conference Paper | IST-REx-ID: 4578
Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “The BLAST Query Language for Software Verification,” 3148:2–18. Springer, 2004. https://doi.org/10.1007/978-3-540-27864-1_2.
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2004 | Conference Paper | IST-REx-ID: 4577
Beyer, Dirk, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “An Eclipse Plug-in for Model Checking,” 251–55. IEEE, 2004. https://doi.org/10.1109/WPC.2004.1311069  .
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2004 | Conference Paper | IST-REx-ID: 4581
Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “Generating Tests from Counterexamples,” 326–35. IEEE, 2004. https://doi.org/10.1109/ICSE.2004.1317455.
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2004 | Conference Paper | IST-REx-ID: 4629
De Alfaro, Luca, Marco Faella, Thomas A Henzinger, Ritankar Majumdar, and Mariëlle Stoelinga. “Model Checking Discounted Temporal Properties,” 2988:77–92. Springer, 2004. https://doi.org/10.1007/978-3-540-24730-2_6.
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2004 | Journal Article | IST-REx-ID: 6155
Cheung, Benny H.H, Fausto Arellano-Carbajal, Irene Rybicki, and Mario de Bono. “Soluble Guanylate Cyclases Act in Neurons Exposed to the Body Fluid to Promote C. Elegans Aggregation Behavior.” Current Biology. Elsevier, 2004. https://doi.org/10.1016/j.cub.2004.06.027.
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2004 | Journal Article | IST-REx-ID: 7334
Mantzaras, John, Stefan Alexander Freunberger, Felix N. Büchi, Markus Roos, Wilhelm Brandstätter, Michel Prestat, Ludwig J. Gauckler, et al. “Fuel Cell Modeling and Simulations.” CHIMIA International Journal for Chemistry. Swiss Chemical Society, 2004. https://doi.org/10.2533/000942904777677029.
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2004 | Journal Article | IST-REx-ID: 7333
Santis, M., D. Schmid, M. Ruge, Stefan Alexander Freunberger, and F.N. Büchi. “Modular Stack-Internal Air Humidification Concept-Verification in a 1 KW Stack.” Fuel Cells. Wiley, 2004. https://doi.org/10.1002/fuce.200400028.
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2004 | Journal Article | IST-REx-ID: 864
Panchenko, Anna, Fyodor Kondrashov, and Stephen Bryant. “Prediction of Functional Sites by Analysis of Sequence and Structure Conservation.” Protein Science. Wiley-Blackwell, 2004. https://doi.org/10.1110/ps.03465504.
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2004 | Journal Article | IST-REx-ID: 870
Kondrashov, Fyodor, Aleksey Ogurtsov, and Alexey Kondrashov. “Bioinformatical Assay of Human Gene Morbidity.” Nucleic Acids Research. Oxford University Press, 2004. https://doi.org/10.1093/nar/gkh330.
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2004 | Journal Article | IST-REx-ID: 875
Kondrashov, Fyodor, and Eugene Koonin. “A Common Framework for Understanding the Origin of Genetic Dominance and Evolutionary Fates of Gene Duplications.” Trends in Genetics. Elsevier, 2004. https://doi.org/10.1016/j.tig.2004.05.001.
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2004 | Journal Article | IST-REx-ID: 889
Kern, Andrew, and Fyodor Kondrashov. “Mechanisms and Convergence of Compensatory Evolution in Mammalian Mitochondrial TRNAs.” Nature Genetics. Nature Publishing Group, 2004. https://doi.org/10.1038/ng1451.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
Zilberman, Daniel, Xiaofeng Cao, Lisa K. Johansen, Zhixin Xie, James C. Carrington, and Steven E. Jacobsen. “Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA Methylation Triggered by Inverted Repeats.” Current Biology. Elsevier, 2004. https://doi.org/10.1016/j.cub.2004.06.055.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie, Zhixin, Lisa K. Johansen, Adam M. Gustafson, Kristin D. Kasschau, Andrew D. Lellis, Daniel Zilberman, Steven E. Jacobsen, and James C. Carrington. “Genetic and Functional Diversification of Small RNA Pathways in Plants.” PLoS Biology. Public Library of Science, 2004. https://doi.org/10.1371/journal.pbio.0020104.
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2004 | Journal Article | IST-REx-ID: 9511 | OA
Zilberman, Daniel, and Steven Henikoff. “Silencing of Transposons in Plant Genomes: Kick Them When They’re Down.” Genome Biology. Springer Nature, 2004. https://doi.org/10.1186/gb-2004-5-12-249.
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2004 | Journal Article | IST-REx-ID: 8517
Dolgopyat, Dmitry, Vadim Kaloshin, and Leonid Koralov. “A Limit Shape Theorem for Periodic Stochastic Dispersion.” Communications on Pure and Applied Mathematics. Wiley, 2004. https://doi.org/10.1002/cpa.20032.
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2004 | Journal Article | IST-REx-ID: 8518
Koralov, Leonid, Vadim Kaloshin, and Dmitry Dolgopyat. “Sample Path Properties of the Stochastic Flows.” The Annals of Probability. Institute of Mathematical Statistics, 2004. https://doi.org/10.1214/aop/1078415827.
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2004 | Journal Article | IST-REx-ID: 898
Bazykin, Georgii, Fyodor Kondrashov, Aleksey Ogurtsov, Shamil Sunyaev, and Alexey Kondrashov. “Positive Selection at Sites of Multiple Amino Acid Replacements since Rat-Mouse Divergence.” Nature. Nature Publishing Group, 2004. https://doi.org/10.1038/nature02601.
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2004 | Journal Article | IST-REx-ID: 902
Castillo Davis, Cristian, Fyodor Kondrashov, Daniel Hartl, and Rob Kulathinal. “The Functional Genomic Distribution of Protein Divergence in Two Animal Phyla: Coevolution, Genomic Conflict, and Constraint.” Genome Research. Cold Spring Harbor Laboratory Press, 2004. https://doi.org/10.1101/gr.2195604.
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2004 | Journal Article | IST-REx-ID: 9454
Chan, Simon W.-L., Daniel Zilberman, Zhixin Xie, Lisa K. Johansen, James C. Carrington, and Steven E. Jacobsen. “RNA Silencing Genes Control de Novo DNA Methylation.” Science. American Association for the Advancement of Science, 2004. https://doi.org/10.1126/science.1095989.
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2004 | Journal Article | IST-REx-ID: 12203
Liao, Zhihua, Min Chen, Yifu Gong, Liang Guo, Qiumin Tan, Xiaoqi Feng, Xiaofen Sun, Feng Tan, and Kexuan Tang. “A New Geranylgeranyl Diphosphate Synthase Gene from Ginkgo Biloba, Which Intermediates the Biosynthesis of the Key Precursor for Ginkgolides.” DNA Sequence. Informa UK Limited, 2004. https://doi.org/10.1080/10425170410001667348.
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2004 | Journal Article | IST-REx-ID: 13435
Klajn, Rafal, Marcin Fialkowski, Igor T. Bensemann, Agnieszka Bitner, C. J. Campbell, Kyle Bishop, Stoyan Smoukov, and Bartosz A. Grzybowski. “Multicolour Micropatterning of Thin Films of Dry Gels.” Nature Materials. Springer Nature, 2004. https://doi.org/10.1038/nmat1231.
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2004 | Journal Article | IST-REx-ID: 13434
Campbell, C. J., M. Fialkowski, Rafal Klajn, I. T. Bensemann, and B. A. Grzybowski. “Color Micro- and Nanopatterning with Counter-Propagating Reaction-Diffusion Fronts.” Advanced Materials. Wiley, 2004. https://doi.org/10.1002/adma.200400383.
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2004 | Journal Article | IST-REx-ID: 7706
Brunet, Anne, Lora B. Sweeney, J Fitzhugh Sturgill, Katrin Chua, Paul Greer, Yingxi Lin, Hien Tran, et al. “Stress-Dependent Regulation of FOXO Transcription Factors by the SIRT1 Deacetylase.” Science. American Association for the Advancement of Science, 2004. https://doi.org/10.1126/science.1094637.
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