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102 Publications


2004 | Journal Article | IST-REx-ID: 902
Castillo Davis C, Kondrashov F, Hartl D, Kulathinal R. 2004. The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Research. 14(5), 802–811.
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2004 | Journal Article | IST-REx-ID: 3805
Jonas PM, Bischofberger J, Fricker D, Miles R. 2004. Interneuron Diversity series: Fast in, fast out--temporal and spatial signal processing in hippocampal interneurons. Trends in Neurosciences. 27(1), 30–40.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
Kampa B, Clements J, Jonas PM, Stuart G. 2004. Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity. Journal of Physiology. 556(Pt 2), 337–45.
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2004 | Journal Article | IST-REx-ID: 3809
Schmidt Hieber C, Jonas PM, Bischofberger J. 2004. Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus. Nature. 429(6988), 184–7.
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2004 | Journal Article | IST-REx-ID: 3810
Oliver D, Lien C, Soom M, Baukrowitz T, Jonas PM, Fakler B. 2004. Functional conversion between A-type and delayed rectifier K+ channels by membrane lipids. Science. 304(5668), 265–70.
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2004 | Conference Paper | IST-REx-ID: 3894
Chatterjee K, Majumdar R, Jurdziński M. 2004. On Nash equilibria in stochastic games. CSL: Computer Science Logic, LNCS , vol. 3210, 26–40.
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2004 | Conference Paper | IST-REx-ID: 3895
Chatterjee K, Henzinger TA, Jurdziński M. 2004. Games with secure equilibria. LICS: Logic in Computer Science, 160–169.
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2004 | Journal Article | IST-REx-ID: 3918
Heinze J, Böttcher A, Cremer S. 2004. Production of winged and wingless males in the ant, Cardiocondyla minutior. Insectes Sociaux. 51(3), 275–278.
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2004 | Journal Article | IST-REx-ID: 3929
Witte V, Laffert B, Rosorius O, Lischka P, Blume K, Galler G, Stilper A, Willbold D, D’Aloja P, Sixt MK, Kolanus J, Ott M, Kolanus W, Schuler G, Baur A. 2004. HIV-1 Nef mimics an integrin receptor signal that recruits the polycomb group protein Eed to the plasma membrane. Molecular Cell. 13(2), 179–190.
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2004 | Journal Article | IST-REx-ID: 3931
Zhang H, Baader S, Sixt MK, Kappler J, Rauch U. 2004. Neurocan-GFP fusion protein: a new approach to detect hyaluronan on tissue sections and living cells. Journal of Histochemistry and Cytochemistry. 52(7), 915–922.
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2004 | Journal Article | IST-REx-ID: 3984
Bremer P, Edelsbrunner H, Hamann B, Pascucci V. 2004. A topological hierarchy for functions on triangulated surfaces. IEEE Transactions on Visualization and Computer Graphics. 10(4), 385–396.
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2004 | Journal Article | IST-REx-ID: 3985
Cole Mclaughlin K, Edelsbrunner H, Harer J, Natarajan V, Pascucci V. 2004. Loops in Reeb graphs of 2-manifolds. Discrete & Computational Geometry. 32(2), 231–244.
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2004 | Journal Article | IST-REx-ID: 3986
Bryant R, Edelsbrunner H, Koehl P, Levitt M. 2004. The area derivative of a space-filling diagram. Discrete & Computational Geometry. 32(3), 293–308.
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2004 | Journal Article | IST-REx-ID: 3987
Natarajan V, Edelsbrunner H. 2004. Simplification of three-dimensional density maps. IEEE Transactions on Visualization and Computer Graphics. 10(5), 587–597.
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2004 | Conference Paper | IST-REx-ID: 3988
Choi V, Agarwal P, Edelsbrunner H, Rudolph J. 2004. Local search heuristic for rigid protein docking. WABI: 4th International Workshop on Algorithms in Bioinformatics, LNCS, vol. 3240, 218–229.
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2004 | Conference Paper | IST-REx-ID: 3989
Edelsbrunner H, Harer J, Natarajan V, Pascucci V. 2004. Local and global comparison of continuous functions. VIS: IEEE Visualization, 275–280.
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2004 | Journal Article | IST-REx-ID: 3990
Agarwal P, Edelsbrunner H, Wang Y. 2004. Computing the writhing number of a polygonal knot. Discrete & Computational Geometry. 32(1), 37–53.
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2004 | Journal Article | IST-REx-ID: 4172
Montero J, Heisenberg C-PJ. 2004. Gastrulation dynamics: cells move into focus. Trends in Cell Biology. 14(11), 620–627.
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2004 | Journal Article | IST-REx-ID: 4224
Kruse K, Pantazis P, Bollenbach MT, Julicher F, Gonzalez Gaitan M. 2004. Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model. Development. 131(19), 4843–4856.
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2004 | Book Chapter | IST-REx-ID: 4230
de Vladar H, Cipriani R, Scharifker B, Bubis J. 2004.A mechanism for the prebiotic emergence of proteins. In: Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds. Cellular Origin and Life in Extreme Habitats and Astrobiology, , 83–87.
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2004 | Thesis | IST-REx-ID: 4236
de Vladar H. 2004. Métodos no lineales y sus aplicaciones en dinámicas aleatorias de poblaciones celulares. Centro de estudios avazados, IVIC.
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2004 | Journal Article | IST-REx-ID: 4238
de Vladar H, González J. 2004. Dynamic response of cancer under the influence of immunological activity and therapy. Journal of Theoretical Biology. 227(3), 335–348.
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2004 | Book Chapter | IST-REx-ID: 4239
de Vladar H, Cipriani R, Scharifker B, Bubis J. 2004.A Mechanism for the Prebiotic Emergence of Proteins. In: Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds. Cellular Origin, Life in Extreme Habitats and Astrobiology, vol. 7, 83–87.
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2004 | Journal Article | IST-REx-ID: 4253
Barton NH, Etheridge A, Sturm A. 2004. Coalescence in a Random Background. Annals of Applied Probability. 14(2), 754–785.
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2004 | Conference Paper | IST-REx-ID: 4372
Maler O, Nickovic D. 2004. Monitoring Temporal Properties of Continuous Signals. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 152–166.
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2004 | Thesis | IST-REx-ID: 4424
Jhala R. 2004. Program verification by lazy abstraction. University of California, Berkeley.
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2004 | Conference Paper | IST-REx-ID: 4445
Henzinger TA, Kirsch C. 2004. A typed assembly language for real-time programs. EMSOFT: Embedded Software , 104–113.
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2004 | Conference Paper | IST-REx-ID: 4458
Henzinger TA, Jhala R, Majumdar R, Mcmillan K. 2004. Abstractions from proofs. POPL: Principles of Programming Languages, 232–244.
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2004 | Conference Paper | IST-REx-ID: 4459
Henzinger TA, Jhala R, Majumdar R. 2004. Race checking by context inference. PLDI: Programming Languages Design and Implementation, 1–13.
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2004 | Book Chapter | IST-REx-ID: 4461
Henzinger TA, Jhala R, Majumdar R, Sanvido M. 2004.Extreme model checking. In: Verification: Theory and Practice. LNCS, vol. 2772, 332–358.
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2004 | Conference Paper | IST-REx-ID: 4525
Ghosal A, Henzinger TA, Kirsch C, Sanvido M. 2004. Event-driven programming with logical execution times. HSCC: Hybrid Systems - Computation and Control, LNCS, vol. 2993, 167–170.
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2004 | Conference Paper | IST-REx-ID: 4555
Chatterjee K, De Alfaro L, Henzinger TA. 2004. Trading memory for randomness. QEST: Quantitative Evaluation of Systems, 206–217.
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2004 | Journal Article | IST-REx-ID: 4556
Chatterjee K, Ma D, Majumdar R, Zhao T, Henzinger TA, Palsberg J. 2004. Stack size analysis for interrupt-driven programs. Information and Computation. 194(2), 144–174.
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2004 | Conference Paper | IST-REx-ID: 4558
Chatterjee K, Jurdziński M, Henzinger TA. 2004. Quantitative stochastic parity games. SODA: Symposium on Discrete Algorithms, 121–130.
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2004 | Conference Paper | IST-REx-ID: 4577
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2004. An eclipse plug-in for model checking. IWPC: Program Comprehension, 251–255.
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2004 | Conference Paper | IST-REx-ID: 4578
Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. The BLAST query language for software verification. SAS: Static Analysis Symposium, LNCS, vol. 3148, 2–18.
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2004 | Conference Paper | IST-REx-ID: 4581
Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. Generating tests from counterexamples. ICSE: Software Engineering, 326–335.
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2004 | Journal Article | IST-REx-ID: 2997
Friml J, Yang X, Michniewicz M, Weijers D, Quint A, Tietz O, Benjamins R, Ouwerkerk P, Ljung K, Sandberg G, Hooykaas P, Palme K, Offringa R. 2004. A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science. 306(5697), 862–865.
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2004 | Journal Article | IST-REx-ID: 2998
Duroux M, Houben A, Růžička K, Friml J, Grasser K. 2004. The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. Plant Journal. 40(5), 660–671.
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2004 | Journal Article | IST-REx-ID: 2999
Sauer M, Friml J. 2004. In vitro culture of Arabidopsis embryos within their ovules. Plant Journal. 40(5), 835–843.
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2004 | Book Review | IST-REx-ID: 3142
Hippenmeyer S, Kramer I, Arber S. 2004. Control of neuronal phenotype: What targets tell the cell bodies. Trends in Neurosciences. 27(8), 482–488.
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2004 | Journal Article | IST-REx-ID: 3172
Kolmogorov V, Nguyen T, Nuval A, Spincemaille P, Prince M, Zabih R, Wang Y. 2004. Multiprocessor scheduling implementation of the simultaneous multiple volume SMV navigator method. Magnetic Resonance in Medicine. 52(2), 362–367.
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2004 | Journal Article | IST-REx-ID: 3173
Kolmogorov V, Zabih R. 2004. What energy functions can be minimized via graph cuts? . IEEE Transactions on Pattern Analysis and Machine Intelligence. 26(2), 147–159.
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2004 | Conference Paper | IST-REx-ID: 3177
Zabih R, Kolmogorov V. 2004. Spatially coherent clustering using graph cuts. CVPR: Computer Vision and Pattern Recognition vol. 2, 437–444.
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2004 | Journal Article | IST-REx-ID: 3178
Boykov Y, Kolmogorov V. 2004. An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision. IEEE Transactions on Pattern Analysis and Machine Intelligence. 26(9), 1124–1137.
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2004 | Conference Paper | IST-REx-ID: 3179
Rother C, Kolmogorov V, Blake A. 2004. "GrabCut" - Interactive foreground extraction using iterated graph cuts . SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques vol. 23, 309–314.
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2004 | Conference Paper | IST-REx-ID: 3208
Maurer U, Pietrzak KZ. 2004. Composition of random systems: When two weak make one strong. TCC: Theory of Cryptography Conference, LNCS, vol. 2951, 410–427.
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2004 | Journal Article | IST-REx-ID: 3419
Janovjak HL, Struckmeier J, Hubain M, Kessler M, Kedrov A, Mueller D. 2004. Probing the energy landscape of the membrane protein bacteriorhodopsin. Structure. 12(5), 871–879.
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2004 | Journal Article | IST-REx-ID: 3420
Kedrov A, Ziegler C, Janovjak HL, Kühlbrandt W, Mueller D. 2004. Controlled unfolding and refolding of a single sodium/proton antiporter using atomic force microscopy. Journal of Molecular Biology. 340(5), 1143–1152.
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2004 | Book Chapter | IST-REx-ID: 3574
Edelsbrunner H. 2004.Biological applications of computational topology. In: Handbook of Discrete and Computational Geometry. , 1395–1412.
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2004 | Book Chapter | IST-REx-ID: 3575
Edelsbrunner H, Harer J. 2004.Jacobi sets of multiple Morse functions. In: Foundations of Computational Mathematics. London Mathematical Society Lecture Note, vol. 312, 37–57.
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2004 | Book Chapter | IST-REx-ID: 3587
Ulrich F, Heisenberg C-PJ. 2004.Gastrulation in zebrafish. In: Fish development and genetics : the zebrafish and medaka models. Molecular Aspects of Fish and Marine Biology, vol. 2, 39–86.
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2004 | Book Review | IST-REx-ID: 3595
Charlesworth B, Barton NH. 2004. Genome size: Does bigger mean worse? Current Biology. 14(6), R233–R235.
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2004 | Journal Article | IST-REx-ID: 3614
Barton NH, Turelli M. 2004. Effects of allele frequency changes on variance components under a general model of epistasis. Evolution; International Journal of Organic Evolution. 58(10), 2111–2132.
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2004 | Journal Article | IST-REx-ID: 3615
Turelli M, Barton NH. 2004. Polygenic variation maintained by balancing selection: pleiotropy, sex-dependent allelic effects and GxE interactions. Genetics. 166(2), 1053–1079.
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2004 | Book Review | IST-REx-ID: 3616
Barton NH. 2004. Speciation: Why, how, where and when? Current Biology. 14(15), R603–R604.
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2004 | Journal Article | IST-REx-ID: 3617
Barton NH, Etheridge A. 2004. The effect of selection on genealogies. Genetics. 166(2), 1115–1131.
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2004 | Conference Paper | IST-REx-ID: 3688
Ulges A, Lampert C, Breuel T. 2004. Document capture using stereo vision. DocEng: ACM Symposium on Document Engineering, 198–200.
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2004 | Journal Article | IST-REx-ID: 9454
Chan SW-L, ZILBERMAN D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen SE. 2004. RNA silencing genes control de novo DNA methylation. Science. 303(5662), 1336.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, ZILBERMAN D, Jacobsen SE, Carrington JC. 2004. Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. 2(5), 0642–0652.
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2004 | Journal Article | IST-REx-ID: 9511 | OA
ZILBERMAN D, Henikoff S. 2004. Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. 5(12), 249.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
ZILBERMAN D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. 2004. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. 14(13), 1214–1220.
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