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111 Publications


2004 | Journal Article | IST-REx-ID: 2741
L. Erdös and J. Solovej, “Uniform Lieb-Thirring inequality for the three-dimensional Pauli operator with a strong non-homogeneous magnetic field,” Annales Henri Poincare, vol. 5, no. 4. Birkhäuser, pp. 671–741, 2004.
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2004 | Journal Article | IST-REx-ID: 2742
A. Elgart, L. Erdös, B. Schlein, and H. Yau, “Nonlinear Hartree equation as the mean field limit of weakly coupled fermions,” Journal de Mathématiques Pures et Appliquées, vol. 83, no. 10. Elsevier, pp. 1241–1273, 2004.
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2004 | Journal Article | IST-REx-ID: 2787
B. Hof, A. Juel, L. Zhao, D. Henry, H. Ben Hadid, and T. Mullin, “On the onset of oscillatory convection in molten gallium,” Journal of Fluid Mechanics, vol. 515. Cambridge University Press, pp. 391–413, 2004.
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2004 | Journal Article | IST-REx-ID: 2786
B. Hof et al., “Experimental observation of nonlinear traveling waves in turbulent pipe flow,” Science, vol. 305, no. 5690. American Association for the Advancement of Science, pp. 1594–1598, 2004.
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2004 | Journal Article | IST-REx-ID: 2998
M. Duroux, A. Houben, K. Růžička, J. Friml, and K. Grasser, “The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome,” Plant Journal, vol. 40, no. 5. Wiley-Blackwell, pp. 660–671, 2004.
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2004 | Journal Article | IST-REx-ID: 2997
J. Friml et al., “A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux,” Science, vol. 306, no. 5697. American Association for the Advancement of Science, pp. 862–865, 2004.
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2004 | Journal Article | IST-REx-ID: 2999
M. Sauer and J. Friml, “In vitro culture of Arabidopsis embryos within their ovules,” Plant Journal, vol. 40, no. 5. Wiley-Blackwell, pp. 835–843, 2004.
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2004 | Conference Paper | IST-REx-ID: 3208
U. Maurer and K. Z. Pietrzak, “Composition of random systems: When two weak make one strong,” presented at the TCC: Theory of Cryptography Conference, 2004, vol. 2951, pp. 410–427.
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2004 | Book Chapter | IST-REx-ID: 3587
F. Ulrich and C.-P. J. Heisenberg, “Gastrulation in zebrafish,” in Fish development and genetics : the zebrafish and medaka models, vol. 2, V. Korzh and Z. Gong, Eds. World Scientific Publishing, 2004, pp. 39–86.
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2004 | Journal Article | IST-REx-ID: 3617
N. H. Barton and A. Etheridge, “The effect of selection on genealogies,” Genetics, vol. 166, no. 2. Genetics Society of America, pp. 1115–1131, 2004.
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2004 | Book Review | IST-REx-ID: 3616
N. H. Barton, “Speciation: Why, how, where and when?,” Current Biology, vol. 14, no. 15. Cell Press, pp. R603–R604, 2004.
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2004 | Conference Paper | IST-REx-ID: 3688
A. Ulges, C. Lampert, and T. Breuel, “Document capture using stereo vision,” presented at the DocEng: ACM Symposium on Document Engineering, 2004, pp. 198–200.
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2004 | Journal Article | IST-REx-ID: 3810
D. Oliver, C. Lien, M. Soom, T. Baukrowitz, P. M. Jonas, and B. Fakler, “Functional conversion between A-type and delayed rectifier K+ channels by membrane lipids,” Science, vol. 304, no. 5668. American Association for the Advancement of Science, pp. 265–70, 2004.
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2004 | Conference Paper | IST-REx-ID: 3894
K. Chatterjee, R. Majumdar, and M. Jurdziński, “On Nash equilibria in stochastic games,” presented at the CSL: Computer Science Logic, 2004, vol. 3210, pp. 26–40.
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2004 | Conference Paper | IST-REx-ID: 3895
K. Chatterjee, T. A. Henzinger, and M. Jurdziński, “Games with secure equilibria,” presented at the LICS: Logic in Computer Science, 2004, pp. 160–169.
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2004 | Journal Article | IST-REx-ID: 3931
H. Zhang, S. Baader, M. K. Sixt, J. Kappler, and U. Rauch, “Neurocan-GFP fusion protein: a new approach to detect hyaluronan on tissue sections and living cells,” Journal of Histochemistry and Cytochemistry, vol. 52, no. 7. Histochemical Society, pp. 915–922, 2004.
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2004 | Journal Article | IST-REx-ID: 3929
V. Witte et al., “HIV-1 Nef mimics an integrin receptor signal that recruits the polycomb group protein Eed to the plasma membrane,” Molecular Cell, vol. 13, no. 2. Cell Press, pp. 179–190, 2004.
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2004 | Journal Article | IST-REx-ID: 3990
P. Agarwal, H. Edelsbrunner, and Y. Wang, “Computing the writhing number of a polygonal knot,” Discrete & Computational Geometry, vol. 32, no. 1. Springer, pp. 37–53, 2004.
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2004 | Journal Article | IST-REx-ID: 4224
K. Kruse, P. Pantazis, M. T. Bollenbach, F. Julicher, and M. Gonzalez Gaitan, “Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model,” Development, vol. 131, no. 19. Company of Biologists, pp. 4843–4856, 2004.
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2004 | Book Chapter | IST-REx-ID: 4239
H. de Vladar, R. Cipriani, B. Scharifker, and J. Bubis, “A Mechanism for the Prebiotic Emergence of Proteins,” in Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, vol. 7, J. Seckbach, J. Chela Flores, T. Owen, and F. Raulin, Eds. Springer, 2004, pp. 83–87.
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2004 | Journal Article | IST-REx-ID: 4253
N. H. Barton, A. Etheridge, and A. Sturm, “Coalescence in a Random Background,” Annals of Applied Probability, vol. 14, no. 2. Institute of Mathematical Statistics, pp. 754–785, 2004.
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2004 | Book Review | IST-REx-ID: 3142
S. Hippenmeyer, I. Kramer, and S. Arber, “Control of neuronal phenotype: What targets tell the cell bodies,” Trends in Neurosciences, vol. 27, no. 8. Elsevier, pp. 482–488, 2004.
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2004 | Journal Article | IST-REx-ID: 3178
Y. Boykov and V. Kolmogorov, “An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 9. IEEE, pp. 1124–1137, 2004.
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2004 | Journal Article | IST-REx-ID: 3173
V. Kolmogorov and R. Zabih, “What energy functions can be minimized via graph cuts? ,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 2. IEEE, pp. 147–159, 2004.
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2004 | Journal Article | IST-REx-ID: 3172
V. Kolmogorov et al., “Multiprocessor scheduling implementation of the simultaneous multiple volume SMV navigator method,” Magnetic Resonance in Medicine, vol. 52, no. 2. Wiley-Blackwell, pp. 362–367, 2004.
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2004 | Conference Paper | IST-REx-ID: 3177
R. Zabih and V. Kolmogorov, “Spatially coherent clustering using graph cuts,” presented at the CVPR: Computer Vision and Pattern Recognition, 2004, vol. 2, pp. 437–444.
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2004 | Conference Paper | IST-REx-ID: 3179
C. Rother, V. Kolmogorov, and A. Blake, “"GrabCut" - Interactive foreground extraction using iterated graph cuts ,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 2004, vol. 23, no. 3, pp. 309–314.
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2004 | Journal Article | IST-REx-ID: 3420
A. Kedrov, C. Ziegler, H. L. Janovjak, W. Kühlbrandt, and D. Mueller, “Controlled unfolding and refolding of a single sodium/proton antiporter using atomic force microscopy,” Journal of Molecular Biology, vol. 340, no. 5. Elsevier, pp. 1143–1152, 2004.
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2004 | Journal Article | IST-REx-ID: 3419
H. L. Janovjak, J. Struckmeier, M. Hubain, M. Kessler, A. Kedrov, and D. Mueller, “Probing the energy landscape of the membrane protein bacteriorhodopsin,” Structure, vol. 12, no. 5. Cell Press, pp. 871–879, 2004.
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2004 | Book Chapter | IST-REx-ID: 3575
H. Edelsbrunner and J. Harer, “Jacobi sets of multiple Morse functions,” in Foundations of Computational Mathematics, vol. 312, Springer, 2004, pp. 37–57.
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2004 | Book Chapter | IST-REx-ID: 3574
H. Edelsbrunner, “Biological applications of computational topology,” in Handbook of Discrete and Computational Geometry, CRC Press, 2004, pp. 1395–1412.
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2004 | Book Review | IST-REx-ID: 3595
B. Charlesworth and N. H. Barton, “Genome size: Does bigger mean worse?,” Current Biology, vol. 14, no. 6. Cell Press, pp. R233–R235, 2004.
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2004 | Journal Article | IST-REx-ID: 3614
N. H. Barton and M. Turelli, “Effects of allele frequency changes on variance components under a general model of epistasis,” Evolution; International Journal of Organic Evolution, vol. 58, no. 10. Wiley-Blackwell, pp. 2111–2132, 2004.
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2004 | Journal Article | IST-REx-ID: 3615
M. Turelli and N. H. Barton, “Polygenic variation maintained by balancing selection: pleiotropy, sex-dependent allelic effects and GxE interactions,” Genetics, vol. 166, no. 2. Genetics Society of America, pp. 1053–1079, 2004.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
B. Kampa, J. Clements, P. M. Jonas, and G. Stuart, “Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity,” Journal of Physiology, vol. 556, no. Pt 2. Wiley-Blackwell, pp. 337–45, 2004.
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2004 | Journal Article | IST-REx-ID: 3809
C. Schmidt Hieber, P. M. Jonas, and J. Bischofberger, “Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus,” Nature, vol. 429, no. 6988. Nature Publishing Group, pp. 184–7, 2004.
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2004 | Journal Article | IST-REx-ID: 3805
P. M. Jonas, J. Bischofberger, D. Fricker, and R. Miles, “Interneuron Diversity series: Fast in, fast out--temporal and spatial signal processing in hippocampal interneurons,” Trends in Neurosciences, vol. 27, no. 1. Elsevier, pp. 30–40, 2004.
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2004 | Journal Article | IST-REx-ID: 3918
J. Heinze, A. Böttcher, and S. Cremer, “Production of winged and wingless males in the ant, Cardiocondyla minutior,” Insectes Sociaux, vol. 51, no. 3. Springer, pp. 275–278, 2004.
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2004 | Conference Paper | IST-REx-ID: 3988
V. Choi, P. Agarwal, H. Edelsbrunner, and J. Rudolph, “Local search heuristic for rigid protein docking,” presented at the WABI: 4th International Workshop on Algorithms in Bioinformatics, 2004, vol. 3240, pp. 218–229.
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2004 | Journal Article | IST-REx-ID: 3986
R. Bryant, H. Edelsbrunner, P. Koehl, and M. Levitt, “The area derivative of a space-filling diagram,” Discrete & Computational Geometry, vol. 32, no. 3. Springer, pp. 293–308, 2004.
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2004 | Journal Article | IST-REx-ID: 3984
P. Bremer, H. Edelsbrunner, B. Hamann, and V. Pascucci, “A topological hierarchy for functions on triangulated surfaces,” IEEE Transactions on Visualization and Computer Graphics, vol. 10, no. 4. IEEE, pp. 385–396, 2004.
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2004 | Journal Article | IST-REx-ID: 3987
V. Natarajan and H. Edelsbrunner, “Simplification of three-dimensional density maps,” IEEE Transactions on Visualization and Computer Graphics, vol. 10, no. 5. IEEE, pp. 587–597, 2004.
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2004 | Journal Article | IST-REx-ID: 3985
K. Cole Mclaughlin, H. Edelsbrunner, J. Harer, V. Natarajan, and V. Pascucci, “Loops in Reeb graphs of 2-manifolds,” Discrete & Computational Geometry, vol. 32, no. 2. Springer, pp. 231–244, 2004.
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2004 | Conference Paper | IST-REx-ID: 3989
H. Edelsbrunner, J. Harer, V. Natarajan, and V. Pascucci, “Local and global comparison of continuous functions,” presented at the VIS: IEEE Visualization, 2004, pp. 275–280.
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2004 | Journal Article | IST-REx-ID: 4172
J. Montero and C.-P. J. Heisenberg, “Gastrulation dynamics: cells move into focus,” Trends in Cell Biology, vol. 14, no. 11. Cell Press, pp. 620–627, 2004.
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2004 | Journal Article | IST-REx-ID: 4238
H. de Vladar and J. González, “Dynamic response of cancer under the influence of immunological activity and therapy,” Journal of Theoretical Biology, vol. 227, no. 3. Elsevier, pp. 335–348, 2004.
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2004 | Book Chapter | IST-REx-ID: 4230
H. de Vladar, R. Cipriani, B. Scharifker, and J. Bubis, “A mechanism for the prebiotic emergence of proteins,” in Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, A. Hanslmeier, S. Kempe, and J. Seckbach, Eds. Springer, 2004, pp. 83–87.
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2004 | Thesis | IST-REx-ID: 4236
H. de Vladar, “Métodos no lineales y sus aplicaciones en dinámicas aleatorias de poblaciones celulares,” Centro de estudios avazados, IVIC, 2004.
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2004 | Conference Paper | IST-REx-ID: 4372
O. Maler and D. Nickovic, “Monitoring Temporal Properties of Continuous Signals,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, 2004, pp. 152–166.
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2004 | Thesis | IST-REx-ID: 4424
R. Jhala, “Program verification by lazy abstraction,” University of California, Berkeley, 2004.
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2004 | Conference Paper | IST-REx-ID: 4445
T. A. Henzinger and C. Kirsch, “A typed assembly language for real-time programs,” presented at the EMSOFT: Embedded Software , 2004, pp. 104–113.
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2004 | Conference Paper | IST-REx-ID: 4458
T. A. Henzinger, R. Jhala, R. Majumdar, and K. Mcmillan, “Abstractions from proofs,” presented at the POPL: Principles of Programming Languages, 2004, pp. 232–244.
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2004 | Book Chapter | IST-REx-ID: 4461
T. A. Henzinger, R. Jhala, R. Majumdar, and M. Sanvido, “Extreme model checking,” in Verification: Theory and Practice, vol. 2772, Springer, 2004, pp. 332–358.
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2004 | Conference Paper | IST-REx-ID: 4459
T. A. Henzinger, R. Jhala, and R. Majumdar, “Race checking by context inference,” presented at the PLDI: Programming Languages Design and Implementation, 2004, pp. 1–13.
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2004 | Conference Paper | IST-REx-ID: 4525
A. Ghosal, T. A. Henzinger, C. Kirsch, and M. Sanvido, “Event-driven programming with logical execution times,” presented at the HSCC: Hybrid Systems - Computation and Control, 2004, vol. 2993, pp. 167–170.
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2004 | Conference Paper | IST-REx-ID: 4555
K. Chatterjee, L. De Alfaro, and T. A. Henzinger, “Trading memory for randomness,” presented at the QEST: Quantitative Evaluation of Systems, 2004, pp. 206–217.
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2004 | Conference Paper | IST-REx-ID: 4558
K. Chatterjee, M. Jurdziński, and T. A. Henzinger, “Quantitative stochastic parity games,” presented at the SODA: Symposium on Discrete Algorithms, 2004, pp. 121–130.
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2004 | Journal Article | IST-REx-ID: 4556
K. Chatterjee, D. Ma, R. Majumdar, T. Zhao, T. A. Henzinger, and J. Palsberg, “Stack size analysis for interrupt-driven programs,” Information and Computation, vol. 194, no. 2. Elsevier, pp. 144–174, 2004.
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2004 | Conference Paper | IST-REx-ID: 4578
D. Beyer, A. Chlipala, T. A. Henzinger, R. Jhala, and R. Majumdar, “The BLAST query language for software verification,” presented at the SAS: Static Analysis Symposium, 2004, vol. 3148, pp. 2–18.
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2004 | Conference Paper | IST-REx-ID: 4577
D. Beyer, T. A. Henzinger, R. Jhala, and R. Majumdar, “An eclipse plug-in for model checking,” presented at the IWPC: Program Comprehension, 2004, pp. 251–255.
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2004 | Conference Paper | IST-REx-ID: 4581
D. Beyer, A. Chlipala, T. A. Henzinger, R. Jhala, and R. Majumdar, “Generating tests from counterexamples,” presented at the ICSE: Software Engineering, 2004, pp. 326–335.
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2004 | Conference Paper | IST-REx-ID: 4629
L. De Alfaro, M. Faella, T. A. Henzinger, R. Majumdar, and M. Stoelinga, “Model checking discounted temporal properties,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, 2004, vol. 2988, pp. 77–92.
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2004 | Journal Article | IST-REx-ID: 6155
B. H. . Cheung, F. Arellano-Carbajal, I. Rybicki, and M. de Bono, “Soluble guanylate cyclases act in neurons exposed to the body fluid to promote C. elegans aggregation behavior,” Current Biology, vol. 14, no. 12. Elsevier, pp. 1105–1111, 2004.
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2004 | Journal Article | IST-REx-ID: 7334
J. Mantzaras et al., “Fuel cell modeling and simulations,” CHIMIA International Journal for Chemistry, vol. 58, no. 12. Swiss Chemical Society, pp. 857–868, 2004.
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2004 | Journal Article | IST-REx-ID: 7333
M. Santis, D. Schmid, M. Ruge, S. A. Freunberger, and F. N. Büchi, “Modular stack-internal air humidification concept-verification in a 1 kW stack,” Fuel Cells, vol. 4, no. 3. Wiley, pp. 214–218, 2004.
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2004 | Journal Article | IST-REx-ID: 864
A. Panchenko, F. Kondrashov, and S. Bryant, “Prediction of functional sites by analysis of sequence and structure conservation,” Protein Science, vol. 13, no. 4. Wiley-Blackwell, pp. 884–892, 2004.
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2004 | Journal Article | IST-REx-ID: 870
F. Kondrashov, A. Ogurtsov, and A. Kondrashov, “Bioinformatical assay of human gene morbidity,” Nucleic Acids Research, vol. 32, no. 5. Oxford University Press, pp. 1731–1737, 2004.
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2004 | Journal Article | IST-REx-ID: 875
F. Kondrashov and E. Koonin, “A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications,” Trends in Genetics, vol. 20, no. 7. Elsevier, pp. 287–291, 2004.
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2004 | Journal Article | IST-REx-ID: 889
A. Kern and F. Kondrashov, “Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs,” Nature Genetics, vol. 36, no. 11. Nature Publishing Group, pp. 1207–1212, 2004.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
D. Zilberman, X. Cao, L. K. Johansen, Z. Xie, J. C. Carrington, and S. E. Jacobsen, “Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats,” Current Biology, vol. 14, no. 13. Elsevier, pp. 1214–1220, 2004.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Z. Xie et al., “Genetic and functional diversification of small RNA pathways in plants,” PLoS Biology, vol. 2, no. 5. Public Library of Science, pp. 0642–0652, 2004.
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2004 | Journal Article | IST-REx-ID: 9511 | OA
D. Zilberman and S. Henikoff, “Silencing of transposons in plant genomes: kick them when they’re down,” Genome Biology, vol. 5, no. 12. Springer Nature, 2004.
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2004 | Journal Article | IST-REx-ID: 8517
D. Dolgopyat, V. Kaloshin, and L. Koralov, “A limit shape theorem for periodic stochastic dispersion,” Communications on Pure and Applied Mathematics, vol. 57, no. 9. Wiley, pp. 1127–1158, 2004.
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2004 | Journal Article | IST-REx-ID: 8518
L. Koralov, V. Kaloshin, and D. Dolgopyat, “Sample path properties of the stochastic flows,” The Annals of Probability, vol. 32, no. 1A. Institute of Mathematical Statistics, pp. 1–27, 2004.
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2004 | Journal Article | IST-REx-ID: 898
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev, and A. Kondrashov, “Positive selection at sites of multiple amino acid replacements since rat-mouse divergence,” Nature, vol. 429, no. 6991. Nature Publishing Group, pp. 558–562, 2004.
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2004 | Journal Article | IST-REx-ID: 902
C. Castillo Davis, F. Kondrashov, D. Hartl, and R. Kulathinal, “The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint,” Genome Research, vol. 14, no. 5. Cold Spring Harbor Laboratory Press, pp. 802–811, 2004.
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2004 | Journal Article | IST-REx-ID: 9454
S. W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J. C. Carrington, and S. E. Jacobsen, “RNA silencing genes control de novo DNA methylation,” Science, vol. 303, no. 5662. American Association for the Advancement of Science, p. 1336, 2004.
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2004 | Journal Article | IST-REx-ID: 12203
Z. Liao et al., “A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides,” DNA Sequence, vol. 15, no. 2. Informa UK Limited, pp. 153–158, 2004.
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2004 | Journal Article | IST-REx-ID: 13435
R. Klajn et al., “Multicolour micropatterning of thin films of dry gels,” Nature Materials, vol. 3. Springer Nature, pp. 729–735, 2004.
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2004 | Journal Article | IST-REx-ID: 13434
C. J. Campbell, M. Fialkowski, R. Klajn, I. T. Bensemann, and B. A. Grzybowski, “Color micro- and nanopatterning with counter-propagating reaction-diffusion fronts,” Advanced Materials, vol. 16, no. 21. Wiley, pp. 1912–1917, 2004.
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2004 | Journal Article | IST-REx-ID: 7706
A. Brunet et al., “Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase,” Science, vol. 303, no. 5666. American Association for the Advancement of Science, pp. 2011–2015, 2004.
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