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2980 Publications


2013 | Journal Article | IST-REx-ID: 2470 | OA
Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells
M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2471 | OA
Mechanism of protein kinetic stabilization by engineered disulfide crosslinks
I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2472 | OA
Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
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2013 | Journal Article | IST-REx-ID: 2473 | OA
Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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2013 | Journal Article | IST-REx-ID: 250 | OA
Density of Châtelet surfaces failing the Hasse principle
R. De La Bretèche, T.D. Browning, Proceedings of the London Mathematical Society 108 (2013) 1030–1078.
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2013 | Conference Paper | IST-REx-ID: 2517 | OA
Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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2013 | Conference Paper | IST-REx-ID: 2518 | OA View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Conference Paper | IST-REx-ID: 2520 | OA
The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
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2013 | Journal Article | IST-REx-ID: 450 | OA
Source population characteristics affect heterosis following genetic rescue of fragmented plant populations
M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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2013 | Journal Article | IST-REx-ID: 476 | OA View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 500 | OA
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).
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2013 | Journal Article | IST-REx-ID: 501 | OA
A new species of tapir from the Amazon
M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.
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2013 | Journal Article | IST-REx-ID: 507 | OA
Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis
S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
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2013 | Journal Article | IST-REx-ID: 508 | OA
Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
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2013 | Journal Article | IST-REx-ID: 509 | OA
The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
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2013 | Journal Article | IST-REx-ID: 511 | OA
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
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2013 | Journal Article | IST-REx-ID: 516 | OA
A map of cell type‐specific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
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2013 | Technical Report | IST-REx-ID: 5399 | OA
TTP: Tool for Tumor Progression
J. Reiter, I. Bozic, K. Chatterjee, M. Nowak, TTP: Tool for Tumor Progression, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5400 | OA
What is decidable about partially observable Markov decision processes with ω-regular objectives
K. Chatterjee, M. Chmelik, M. Tracol, What Is Decidable about Partially Observable Markov Decision Processes with ω-Regular Objectives, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 5401 | OA
Initiatives and projects related to RD
J. Porsche, Initiatives and Projects Related to RD, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5402 | OA
How free is your linearizable concurrent data structure?
T.A. Henzinger, A. Sezgin, How Free Is Your Linearizable Concurrent Data Structure?, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5403 | OA
Qualitative analysis of concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5404 | OA
The complexity of ergodic games
K. Chatterjee, R. Ibsen-Jensen, The Complexity of Ergodic Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5405 | OA
Perfect-information stochastic mean-payoff parity games
K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, Perfect-Information Stochastic Mean-Payoff Parity Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5406 | OA
Distributed synthesis for LTL Fragments
K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, Distributed Synthesis for LTL Fragments, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 5407 | OA
Technical requirements and features
J. Porsche, Technical Requirements and Features, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5408 | OA
The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5409 | OA
Edit distance for timed automata
K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5410 | OA
Automatic generation of alternative starting positions for traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative Starting Positions for Traditional Board Games, IST Austria, 2013.
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2013 | Book Chapter | IST-REx-ID: 5747 | OA
Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates
C. Dragoi, A. Gupta, T.A. Henzinger, in:, Computer Aided Verification, Springer Berlin Heidelberg, Berlin, Heidelberg, 2013, pp. 174–190.
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2013 | Journal Article | IST-REx-ID: 595 | OA
Struggling to let go: A non-coding RNA directs its own extension and destruction
C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
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2013 | Journal Article | IST-REx-ID: 6128 | OA
Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans
E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono, PLoS Genetics 9 (2013).
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2013 | Journal Article | IST-REx-ID: 6130 | OA
Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination
C. Chen, L.A. Fenk, M. de Bono, Nucleic Acids Research 41 (2013).
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2013 | Journal Article | IST-REx-ID: 6133 | OA
In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor
A. Couto, S. Oda, V.O. Nikolaev, Z. Soltesz, M. de Bono, Proceedings of the National Academy of Sciences 110 (2013) E3301–E3310.
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2013 | Journal Article | IST-REx-ID: 2697 | OA
Delocalization and diffusion profile for random band matrices
L. Erdös, A. Knowles, H. Yau, J. Yin, Communications in Mathematical Physics 323 (2013) 367–416.
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2013 | Journal Article | IST-REx-ID: 2698 | OA
Stability and semiclassics in self-generated fields
L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
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2013 | Conference Paper | IST-REx-ID: 2718 | OA
Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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2013 | Journal Article | IST-REx-ID: 2720 | OA
Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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2013 | Journal Article | IST-REx-ID: 2780 | OA
Averaging fluctuations in resolvents of random band matrices
L. Erdös, A. Knowles, H. Yau, Annales Henri Poincare 14 (2013) 1837–1926.
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2013 | Journal Article | IST-REx-ID: 2781 | OA
Spectral statistics of Erdős-Rényi graphs I: Local semicircle law
L. Erdös, A. Knowles, H. Yau, J. Yin, Annals of Probability 41 (2013) 2279–2375.
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2013 | Journal Article | IST-REx-ID: 2782 | OA
Local eigenvalue density for general MANOVA matrices
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
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2013 | Conference Paper | IST-REx-ID: 2807 | OA
Extending continuous maps: Polynomiality and undecidability
M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
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2013 | Journal Article | IST-REx-ID: 2808 | OA
The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
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2013 | Journal Article | IST-REx-ID: 2810 | OA
Environmental dependence of genetic constraint
M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
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2013 | Journal Article | IST-REx-ID: 2811 | OA
Nature of laminar-turbulence intermittency in shear flows
M. Avila, B. Hof, Physical Review E 87 (2013).
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2013 | Conference Paper | IST-REx-ID: 2812 | OA
Homological reconstruction and simplification in R3
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
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2013 | Journal Article | IST-REx-ID: 2813 | OA
Elasto-inertial turbulence
D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
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2013 | Journal Article | IST-REx-ID: 2814 | OA
The complexity of coverage
K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.
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2013 | Journal Article | IST-REx-ID: 2816 | OA
Evolutionary dynamics of cancer in response to targeted combination therapy
I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
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2013 | Journal Article | IST-REx-ID: 2817 | OA
Density games
S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.
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