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2262 Publications


2013 | Journal Article | IST-REx-ID: 2412   OA
Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .” BMC Evolutionary Biology 13, no. 1 (2013): 54–54. https://doi.org/10.1186/1471-2148-13-54.
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2013 | Journal Article | IST-REx-ID: 2828   OA
Kolmogorov, Vladimir, and Stanislav Živný. “The Complexity of Conservative Valued CSPs.” Journal of the ACM 60, no. 2 (2013). https://doi.org/10.1145/2450142.2450146.
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2013 | Journal Article | IST-REx-ID: 2835   OA
Yu, Hong, Michael Karampelias, Stéphanie Robert, Wendy Peer, Ranjan Swarup, Songqing Ye, Lei Ge, et al. “Root Ultraviolet B-Sensitive1/Weak Auxin Response3 Is Essential for Polar Auxin Transport in Arabidopsis.” Plant Physiology 162, no. 2 (2013): 965–76. https://doi.org/10.1104/pp.113.217018.
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2013 | Journal Article | IST-REx-ID: 2842   OA
Barton, Nicholas H, Alison Etheridge, Jerome Kelleher, and Amandine Véber. “Inference in Two Dimensions: Allele Frequencies versus Lengths of Shared Sequence Blocks.” Theoretical Population Biology 87, no. 1 (2013): 105–19. https://doi.org/10.1016/j.tpb.2013.03.001.
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2013 | Journal Article | IST-REx-ID: 2816   OA
Božić, Ivana, Johannes Reiter, Benjamin Allen, Tibor Antal, Krishnendu Chatterjee, Preya Shah, Yo Moon, et al. “Evolutionary Dynamics of Cancer in Response to Targeted Combination Therapy.” ELife 2 (2013). https://doi.org/10.7554/eLife.00747.
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2013 | Journal Article | IST-REx-ID: 2811   OA
Avila, Marc, and Björn Hof. “Nature of Laminar-Turbulence Intermittency in Shear Flows.” Physical Review E 87, no. 6 (2013). https://doi.org/10.1103/PhysRevE.87.063012.
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2013 | Journal Article | IST-REx-ID: 2880   OA
Marhavy, Peter, Marleen Vanstraelen, Bert De Rybel, Ding Zhaojun, Malcolm Bennett, Tom Beeckman, and Eva Benková. “Auxin Reflux between the Endodermis and Pericycle Promotes Lateral Root Initiation.” EMBO Journal 32, no. 1 (2013): 149–58. https://doi.org/10.1038/emboj.2012.303.
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2013 | Conference Paper | IST-REx-ID: 2948   OA
Tommasi, Tatiana, Novi Quadrianto, Barbara Caputo, and Christoph Lampert. “Beyond Dataset Bias: Multi-Task Unaligned Shared Knowledge Transfer.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-37331-2_1.
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2013 | Journal Article | IST-REx-ID: 2859   OA
Bendich, Paul, Herbert Edelsbrunner, Dmitriy Morozov, and Amit Patel. “Homology and Robustness of Level and Interlevel Sets.” Homology, Homotopy and Applications 15, no. 1 (2013): 51–72. https://doi.org/10.4310/HHA.2013.v15.n1.a3.
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2013 | Journal Article | IST-REx-ID: 509   OA
Di Rubbo, Simone, Niloufer Irani, Soo Kim, Zheng Xu, Astrid Gadeyne, Wim Dejonghe, Isabelle Vanhoutte, et al. “The Clathrin Adaptor Complex AP-2 Mediates Endocytosis of Brassinosteroid INSENSITIVE1 in Arabidopsis.” Plant Cell 25, no. 8 (2013): 2986–97. https://doi.org/10.1105/tpc.113.114058.
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2013 | Journal Article | IST-REx-ID: 516   OA
Bargmann, Bastiaan, Steffen Vanneste, Gabriel Krouk, Tal Nawy, Idan Efroni, Eilon Shani, Goh Choe, et al. “A Map of Cell Type‐specific Auxin Responses.” Molecular Systems Biology 9, no. 1 (2013). https://doi.org/10.1038/msb.2013.40 .
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2013 | Journal Article | IST-REx-ID: 511   OA
Pěnčík, Aleš, Biljana Simonovik, Sara Petersson, Eva Henyková, Sibu Simon, Kathleen Greenham, Yi Zhang, et al. “Regulation of Auxin Homeostasis and Gradients in Arabidopsis Roots through the Formation of the Indole-3-Acetic Acid Catabolite 2-Oxindole-3-Acetic Acid.” Plant Cell 25, no. 10 (2013): 3858–70. https://doi.org/10.1105/tpc.113.114421.
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2013 | Technical Report | IST-REx-ID: 5409   OA
Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Rupak Majumdar. Edit Distance for Timed Automata. IST Austria, 2013. https://doi.org/10.15479/AT:IST-2013-144-v1-1.
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2013 | Journal Article | IST-REx-ID: 6128   OA
Kodama-Namba, Eiji, Lorenz A. Fenk, Andrew J. Bretscher, Einav Gross, K. Emanuel Busch, and Mario de Bono. “Cross-Modulation of Homeostatic Responses to Temperature, Oxygen and Carbon Dioxide in C. Elegans.” PLoS Genetics 9, no. 12 (2013). https://doi.org/10.1371/journal.pgen.1004011.
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2013 | Journal Article | IST-REx-ID: 6130   OA
Chen, Changchun, Lorenz A. Fenk, and Mario de Bono. “Efficient Genome Editing in Caenorhabditis Elegans by CRISPR-Targeted Homologous Recombination.” Nucleic Acids Research 41, no. 20 (2013). https://doi.org/10.1093/nar/gkt805.
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2013 | Technical Report | IST-REx-ID: 6440   OA
Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues . IST Austria, 2013. https://doi.org/10.15479/AT:IST-2013-124-v1-1.
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2013 | Journal Article | IST-REx-ID: 972   OA
Okada, Yoshinori, Maksym Serbyn, Hsin Lin, Daniel Walkup, Wenwen Zhou, Chetan Dhital, Madhab Neupane, et al. “Observation of Dirac Node Formation and Mass Acquisition in a Topological Crystalline Insulator.” Science 341, no. 6153 (2013): 1496–99. https://doi.org/10.1126/science.1239451.
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2013 | Conference Paper | IST-REx-ID: 2847   OA
Bansal, Kshitij, Eric Koskinen, Thomas Wies, and Damien Zufferey. “Structural Counter Abstraction.” Edited by Nir Piterman and Scott Smolka. Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-36742-7_5.
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2013 | Journal Article | IST-REx-ID: 2854   OA
Chatterjee, Krishnendu, Luca De Alfaro, and Thomas A Henzinger. “Strategy Improvement for Concurrent Reachability and Turn Based Stochastic Safety Games.” Journal of Computer and System Sciences 79, no. 5 (2013): 640–57. https://doi.org/10.1016/j.jcss.2012.12.001.
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2013 | Journal Article | IST-REx-ID: 2139   OA
Lemeshko, Mikhail. “Manipulating Scattering of Ultracold Atoms with Light-Induced Dissipation.” Frontiers Physics 1, no. 17 (2013). https://doi.org/10.3389/fphy.2013.00017.
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2013 | Journal Article | IST-REx-ID: 2204   OA
Bhongale, Satyan, Ludwig Mathey, Erhai Zhao, Susanne Yelin, and Mikhail Lemeshko. “Quantum Phases of Quadrupolar Fermi Gases in Optical Lattices.” Physical Review Letters 110, no. 15 (2013). https://doi.org/10.1103/PhysRevLett.110.155301.
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2013 | Conference Paper | IST-REx-ID: 2259   OA
Alwen, Joel F, Stephan Krenn, Krzysztof Z Pietrzak, and Daniel Wichs. “Learning with Rounding, Revisited: New Reduction Properties and Applications.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-40041-4_4.
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2013 | Journal Article | IST-REx-ID: 2280   OA
Uhler, Caroline, and Stephen Wright. “Packing Ellipsoids with Overlap.” SIAM Review 55, no. 4 (2013): 671–706. https://doi.org/10.1137/120872309.
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2013 | Report | IST-REx-ID: 2273   OA
Kolmogorov, Vladimir. Reweighted Message Passing Revisited. IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 2297   OA
Seiringer, Robert. “Hot Topics in Cold Gases: A Mathematical Physics Perspective.” Japanese Journal of Mathematics 8, no. 2 (2013): 185–232. https://doi.org/10.1007/s11537-013-1264-5.
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2013 | Journal Article | IST-REx-ID: 2300   OA
Giuliani, Alessandro, Élliott Lieb, and Robert Seiringer. “Realization of Stripes and Slabs in Two and Three Dimensions.” Physical Review B 88, no. 6 (2013). https://doi.org/10.1103/PhysRevB.88.064401.
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2013 | Journal Article | IST-REx-ID: 245   OA
Baier, Stephan, and Timothy D Browning. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik, no. 680 (2013): 69–151. https://doi.org/10.1515/crelle.2012.039.
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2013 | Journal Article | IST-REx-ID: 2468   OA
Bojsen-Hansen, Morten, and Christopher J Wojtan. “Liquid Surface Tracking with Error Compensation.” ACM Transactions on Graphics 32, no. 4 (2013). https://doi.org/10.1145/2461912.2461991.
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2013 | Journal Article | IST-REx-ID: 2470   OA
Čovanová, Milada, Michael Sauer, Jan Rychtář, Jirí Friml, Jan Petrášek, and Eva Zažímalová. “Overexpression of the Auxin Binding PROTEIN1 Modulates PIN-Dependent Auxin Transport in Tobacco Cells.” PLoS One 8, no. 7 (2013). https://doi.org/10.1371/journal.pone.0070050.
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2013 | Journal Article | IST-REx-ID: 2780   OA
Erdös, László, Antti Knowles, and Horng Yau. “Averaging Fluctuations in Resolvents of Random Band Matrices.” Annales Henri Poincare 14, no. 8 (2013): 1837–1926. https://doi.org/10.1007/s00023-013-0235-y.
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2013 | Journal Article | IST-REx-ID: 2862   OA
Tay, Hwee, Sabrina Schulze, Julien Compagnon, Fiona Foley, Carl-Philipp J Heisenberg, H Joseph Yost, Salim Abdelilah Seyfried, and Jeffrey Amack. “Lethal Giant Larvae 2 Regulates Development of the Ciliated Organ Kupffer’s Vesicle.” Development 140, no. 7 (2013): 1550–59. https://doi.org/10.1242/dev.087130.
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2013 | Journal Article | IST-REx-ID: 2881   OA
Li, Hongjiang, Tongda Xu, Deshu Lin, Mingzhang Wen, Mingtang Xie, Jérôme Duclercq, Agnieszka Bielach, et al. “Cytokinin Signaling Regulates Pavement Cell Morphogenesis in Arabidopsis.” Cell Research 23, no. 2 (2013): 290–99. https://doi.org/10.1038/cr.2012.146.
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2013 | Conference Paper | IST-REx-ID: 2901   OA
Chen, Chao, Vladimir Kolmogorov, Zhu Yan, Dimitris Metaxas, and Christoph Lampert. “Computing the M Most Probable Modes of a Graphical Model,” 31:161–69. JMLR, 2013.
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2013 | Conference Paper | IST-REx-ID: 2906   OA
Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes and Their Implementation.” In 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, 70–77. Society of Industrial and Applied Mathematics, 2013. https://doi.org/10.1137/1.9781611972931.6.
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2013 | Journal Article | IST-REx-ID: 2913   OA
Tkacik, Gasper, Einat Granot Atedgi, Ronen Segev, and Elad Schneidman. “Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses.” Physical Review Letters 110, no. 5 (2013). https://doi.org/10.1103/PhysRevLett.110.058104.
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2013 | Journal Article | IST-REx-ID: 2829   OA
Shi, Liang, Marc Avila, and Björn Hof. “Scale Invariance at the Onset of Turbulence in Couette Flow.” Physical Review Letters 110, no. 20 (2013). https://doi.org/10.1103/PhysRevLett.110.204502.
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2013 | Journal Article | IST-REx-ID: 2855   OA
Hippenmeyer, Simon, Randy Johnson, and Liqun Luo. “Mosaic Analysis with Double Markers Reveals Cell Type Specific Paternal Growth Dominance.” Cell Reports 3, no. 3 (2013): 960–67. https://doi.org/10.1016/j.celrep.2013.02.002.
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2013 | Journal Article | IST-REx-ID: 2850   OA
Tkacik, Gasper, Olivier Marre, Thierry Mora, Dario Amodei, Michael Berry, and William Bialek. “The Simplest Maximum Entropy Model for Collective Behavior in a Neural Network.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 3 (2013). https://doi.org/10.1088/1742-5468/2013/03/P03011.
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2013 | Conference Paper | IST-REx-ID: 2812   OA
Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André Lieutier. “Homological Reconstruction and Simplification in R3.” In Proceedings of the 29th Annual Symposium on Computational Geometry, 117–25. ACM, 2013. https://doi.org/10.1145/2462356.2462373.
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2013 | Journal Article | IST-REx-ID: 2920   OA
Compagnon, Julien, and Carl-Philipp J Heisenberg. “Neurulation Coordinating Cell Polarisation and Lumen Formation.” EMBO Journal 32, no. 1 (2013): 1–3. https://doi.org/10.1038/emboj.2012.325.
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2013 | Journal Article | IST-REx-ID: 500   OA
Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” BMC Evolutionary Biology 13, no. 1 (2013). https://doi.org/10.1186/1471-2148-13-222.
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2013 | Journal Article | IST-REx-ID: 6768   OA
Mondelli, Marco. “A Finite Difference Scheme for the Stack Filter Simulating the MCM.” Image Processing On Line 3 (2013): 68–111. https://doi.org/10.5201/ipol.2013.53.
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2013 | Journal Article | IST-REx-ID: 827   OA
O’Brien, José, and Eva Benková. “Cytokinin Cross Talking during Biotic and Abiotic Stress Responses.” Frontiers in Plant Science 4 (2013). https://doi.org/10.3389/fpls.2013.00451.
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2013 | Journal Article | IST-REx-ID: 973   OA
Serbyn, Maksym, Zlatko Papić, and Dmitry Abanin. “Local Conservation Laws and the Structure of the Many Body Localized States.” Physical Review Letters 111, no. 12 (2013). https://doi.org/10.1103/PhysRevLett.111.127201.
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2013 | Journal Article | IST-REx-ID: 2247   OA
Zagorsky, Benjamin, Johannes Reiter, Krishnendu Chatterjee, and Martin Nowak. “Forgiver Triumphs in Alternating Prisoner’s Dilemma .” PLoS One 8, no. 12 (2013). https://doi.org/10.1371/journal.pone.0080814.
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2013 | Conference Paper | IST-REx-ID: 2305   OA
Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera. “Trading Performance for Stability in Markov Decision Processes.” In 28th Annual ACM/IEEE Symposium, 331–40. IEEE, 2013. https://doi.org/10.1109/LICS.2013.39.
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2013 | Conference Paper | IST-REx-ID: 2444   OA
Chatterjee, Krishnendu, and Jakub Ła̧Cki. “Faster Algorithms for Markov Decision Processes with Low Treewidth.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_36.
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2013 | Journal Article | IST-REx-ID: 2836   OA
Chatterjee, Krishnendu, and Vishwanath Raman. “Assume-Guarantee Synthesis for Digital Contract Signing.” Formal Aspects of Computing 26, no. 4 (2013): 825–59. https://doi.org/10.1007/s00165-013-0283-6.
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2013 | Journal Article | IST-REx-ID: 2817   OA
Novak, Sebastian, Krishnendu Chatterjee, and Martin Nowak. “Density Games.” Journal of Theoretical Biology 334 (2013): 26–34. https://doi.org/10.1016/j.jtbi.2013.05.029.
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2013 | Conference Paper | IST-REx-ID: 2886   OA
Chmelik, Martin, and Vojtěch Řehák. “Controllable-Choice Message Sequence Graphs.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-36046-6_12.
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