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3516 Publications


2011 | Journal Article | IST-REx-ID: 3101 | OA
The AP 3 adaptor complex is required for vacuolar function in Arabidopsis
M. Zwiewka, E. Feraru, B. Möller, I. Hwang, M. Feraru, J. Kleine Vehn, D. Weijers, J. Friml, Cell Research 21 (2011) 1711–1722.
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2011 | Journal Article | IST-REx-ID: 3269 | OA
Perceptual global illumination cancellation in complex projection environments
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
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2011 | Journal Article | IST-REx-ID: 3276 | OA
Fast, scalable, Bayesian spike identification for multi-electrode arrays
J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, P. Nelson, PLoS One 6 (2011).
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2011 | Journal Article | IST-REx-ID: 3288 | OA
Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
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2011 | Journal Article | IST-REx-ID: 3290 | OA
A general method for calculating likelihoods under the coalescent process
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
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2011 | Conference Paper | IST-REx-ID: 3297 | OA
Liquid simulation with mesh-based surface tracking
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3298 | OA
Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
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2011 | Conference Paper | IST-REx-ID: 3299 | OA
Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
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2011 | Conference Paper | IST-REx-ID: 3301 | OA
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
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2011 | Conference Paper | IST-REx-ID: 3302 | OA
Static scheduling in clouds
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
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2011 | Conference Poster | IST-REx-ID: 3312 | OA
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3313 | OA
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
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2011 | Journal Article | IST-REx-ID: 3315 | OA
Timed parity games: Complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
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2011 | Conference Paper | IST-REx-ID: 3316 | OA
Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
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2011 | Journal Article | IST-REx-ID: 3318 | OA View | DOI | Download Submitted Version (ext.)
 

2011 | Journal Article | IST-REx-ID: 3320 | OA
Structured learning and prediction in computer vision
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
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2011 | Conference Paper | IST-REx-ID: 3324 | OA
Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3326 | OA
What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3328 | OA
A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
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2011 | Conference Paper | IST-REx-ID: 3329 | OA
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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2011 | Conference Paper | IST-REx-ID: 3330 | OA
Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
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2011 | Journal Article | IST-REx-ID: 3332 | OA
A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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2011 | Book Chapter | IST-REx-ID: 3335 | OA
Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
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2011 | Preprint | IST-REx-ID: 3338 | OA
Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
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2011 | Preprint | IST-REx-ID: 3339 | OA View | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3342 | OA
Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
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2011 | Conference Paper | IST-REx-ID: 3343 | OA View | DOI | Download Submitted Version (ext.)
 

2011 | Conference Paper | IST-REx-ID: 3345 | OA
Energy and mean-payoff parity Markov Decision Processes
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Scheduling large jobs by abstraction refinement
T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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2011 | Preprint | IST-REx-ID: 3363 | OA
The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
QUASY: quantitative synthesis tool
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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2011 | Journal Article | IST-REx-ID: 3370 | OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Inclusive fitness theory and eusociality
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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2011 | Journal Article | IST-REx-ID: 3375 | OA
The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Natural images from the birthplace of the human eye
G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
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2011 | Journal Article | IST-REx-ID: 3390 | OA
The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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2011 | Journal Article | IST-REx-ID: 3399 | OA View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3405 | OA
Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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2011 | Thesis | IST-REx-ID: 3275 | OA
The role of chemotactic gradients in dendritic cell migration
K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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2011 | Conference Paper | IST-REx-ID: 9648 | OA
Incremental-decremental algorithm for computing AT-models and persistent homology
R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
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2011 | Journal Article | IST-REx-ID: 9483 | OA
Regulation of imprinted gene expression in Arabidopsis endosperm
T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.
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2011 | Other Publication | IST-REx-ID: 9522 | OA
Balancing parental contributions in plant embryonic gene activation
D. ZILBERMAN, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.
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2011 | Conference Paper | IST-REx-ID: 9943 | OA
Ilastik: Interactive learning and segmentation toolkit
C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.
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2010 | Journal Article | IST-REx-ID: 232 | OA
Le problème des diviseurs pour des formes binaires de degré 4
R. De La Bretèche, T.D. Browning, Journal Fur Die Reine Und Angewandte Mathematik (2010) 1–44.
View | DOI | Download Preprint (ext.) | arXiv
 

2010 | Conference Paper | IST-REx-ID: 2322 | OA
Equivalence of Sobolev inequalities and Lieb-Thirring inequalities
R. Frank, É. Lieb, R. Seiringer, in:, World Scientific Publishing, 2010, pp. 523–535.
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2010 | Conference Paper | IST-REx-ID: 2323 | OA
Hot topics on cold gases
R. Seiringer, in:, World Scientific Publishing, 2010, pp. 231–245.
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2010 | Book Chapter | IST-REx-ID: 2324 | OA
Sharp fractional Hardy inequalities in half-spaces
R. Frank, R. Seiringer, in:, Around the Research of Vladimir Maz’ya I, Springer, 2010, pp. 161–167.
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2010 | Journal Article | IST-REx-ID: 2389 | OA
Asymptotic behavior of eigenvalues of Schrödinger type operators with degenerate kinetic energy
C. Hainzl, R. Seiringer, Mathematische Nachrichten 283 (2010) 489–499.
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2010 | Journal Article | IST-REx-ID: 2392 | OA
Bipolaron and N-polaron binding energies
R. Frank, É. Lieb, R. Seiringer, L. Thomas, Physical Review Letters 104 (2010).
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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2010 | Journal Article | IST-REx-ID: 2442 | OA
Nitrate Contra Auxin: Nutrient Sensing by roots
T. Beeckman, J. Friml, Developmental Cell 18 (2010) 877–878.
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2010 | Journal Article | IST-REx-ID: 2701 | OA
Wegner estimate and level repulsion for Wigner random matrices
L. Erdös, B. Schlein, H. Yau, International Mathematics Research Notices (2010) 436–479.
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2010 | Conference Paper | IST-REx-ID: 2978 | OA
Efficiency Limitations for Σ-Protocols for Group Homomorphisms
E. Bangerter, J. Camenisch, S. Krenn, in:, D. Micciancio (Ed.), Springer, 2010, pp. 553–571.
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2010 | Conference Paper | IST-REx-ID: 2979 | OA
A Certifying Compiler for Zero-Knowledge Proofs of Knowledge Based on Sigma-Protocols
J. Almeida, E. Bangerter, M. Barbosa, S. Krenn, A. Sadeghi, T. Schneider, in:, D. Gritzalis, B. Preneel, M. Theoharidou (Eds.), Springer, 2010, pp. 151–167.
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2010 | Journal Article | IST-REx-ID: 1752 | OA
Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon
G. Katsaros, P. Spathis, M. Stoffel, F. Fournel, M. Mongillo, V. Bouchiat, F. Lefloch, A. Rastelli, O. Schmidt, S. De Franceschi, Nature Nanotechnology 5 (2010) 458–464.
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2010 | Journal Article | IST-REx-ID: 1753 | OA
Quantum transport in GaN/AlN double-barrier heterostructure nanowires
R. Songmuang, G. Katsaros, E. Monroy, P. Spathis, C. Bougerol, M. Mongillo, S. De Franceschi, Nano Letters 10 (2010) 3545–3550.
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2010 | Journal Article | IST-REx-ID: 1773 | OA
Quantum-to-classical transition in cavity quantum electrodynamics
J.M. Fink, L. Steffen, P. Studer, L. Bishop, M. Baur, R. Bianchetti, D. Bozyigit, C. Lang, S. Filipp, P. Leek, A. Wallraff, Physical Review Letters 105 (2010).
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2010 | Journal Article | IST-REx-ID: 1774 | OA
Control and tomography of a three level superconducting artificial atom
R. Bianchetti, S. Filipp, M. Baur, J.M. Fink, C. Lang, L. Steffen, M. Boissonneault, A. Blais, A. Wallraff, Physical Review Letters 105 (2010).
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2010 | Journal Article | IST-REx-ID: 2095 | OA
High-quality single-shot capture of facial geometry
T. Beeler, B. Bickel, P. Beardsley, B. Sumner, M. Groß, ACM Transactions on Graphics 29 (2010).
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2010 | Journal Article | IST-REx-ID: 2124 | OA
Malliavin calculus and decoupling inequalities in Banach spaces
J. Maas, Journal of Mathematical Analysis and Applications 363 (2010) 383–398.
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2010 | Journal Article | IST-REx-ID: 2194 | OA
An analytic model of the stereodynamics of rotationally inelastic molecular collisions
M. Lemeshko, B. Friedrich, Physical Chemistry Chemical Physics 12 (2010) 1038–1041.
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2010 | Journal Article | IST-REx-ID: 2195 | OA
Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions
M. Lemeshko, P. Jambrina, M. De Miranda, B. Friedrich, Journal of Chemical Physics 132 (2010).
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2010 | Journal Article | IST-REx-ID: 2196 | OA
Fine-tuning molecular energy levels by nonresonant laser pulses
M. Lemeshko, B. Friedrich, Journal of Physical Chemistry A 114 (2010) 9848–9854.
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2010 | Journal Article | IST-REx-ID: 2197 | OA
Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases
M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 82 (2010).
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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2010 | Technical Report | IST-REx-ID: 5388 | OA
Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5389 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5390 | OA
Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
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