Please note that IST Research Explorer no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
2616 Publications
2012 | Journal Article | IST-REx-ID: 3262 | 
Optimizing information flow in small genetic networks. III. A self-interacting gene
G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
View
| DOI
| Download Preprint (ext.)
G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
2012 | Conference Paper | IST-REx-ID: 3280 |
Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
View
| DOI
| Download Submitted Version (ext.)
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
2012 | Conference Paper | IST-REx-ID: 3282 |
Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
View
| Files available
| DOI
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
2012 | Journal Article | IST-REx-ID: 3289 |
A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
2012 | Journal Article | IST-REx-ID: 3310 |
A point calculus for interlevel set homology
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
View
| Files available
| DOI
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
2012 | Journal Article | IST-REx-ID: 3317 |
Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
View
| Files available
| DOI
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
2012 | Journal Article | IST-REx-ID: 3331 |
A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
View
| DOI
| Download Preprint (ext.)
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
2012 | Conference Paper | IST-REx-ID: 3341 |
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
View
| Files available
| DOI
| Download Preprint (ext.)
| arXiv
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
2012 | Conference Paper | IST-REx-ID: 3251 |
Ideal abstractions for well structured transition systems
D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
View
| Files available
| DOI
D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
2011 | Journal Article | IST-REx-ID: 469 |
Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
View
| DOI
| Download Submitted Version (ext.)
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
2011 | Journal Article | IST-REx-ID: 490 |
BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
View
| Files available
| DOI
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
2011 | Journal Article | IST-REx-ID: 518 |
CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
2011 | Journal Article | IST-REx-ID: 531 |
Verification of STM on relaxed memory models
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
View
| DOI
| Download Published Version (ext.)
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
2011 | Technical Report | IST-REx-ID: 5379 |
An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5380 |
Bounded rationality in concurrent parity games
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5381 |
Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5382 |
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5383 |
On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
View
| Files available
| DOI
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5384 |
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5385 |
Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
View
| Files available
| DOI
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5386 |
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
View
| Files available
| DOI
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5387 |
Energy and mean-payoff parity Markov decision processes
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
View
| Files available
| DOI
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
2011 | Journal Article | IST-REx-ID: 3778 |
Estimating linkage disequilibria
N.H. Barton, Heredity 106 (2011) 205–206.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
N.H. Barton, Heredity 106 (2011) 205–206.
2011 | Journal Article | IST-REx-ID: 3784 |
Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
View
| DOI
| Download Published Version (ext.)
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
2011 | Book Chapter | IST-REx-ID: 3796 |
Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
View
| Files available
| DOI
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
2011 | Journal Article | IST-REx-ID: 3269 |
Perceptual global illumination cancellation in complex projection environments
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
View
| DOI
| Download Published Version (ext.)
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
2011 | Journal Article | IST-REx-ID: 3288 |
Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
View
| Files available
| DOI
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3290 |
A general method for calculating likelihoods under the coalescent process
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
View
| DOI
| Download Submitted Version (ext.)
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
2011 | Conference Paper | IST-REx-ID: 3297 |
Liquid simulation with mesh-based surface tracking
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
View
| Files available
| DOI
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
2011 | Conference Paper | IST-REx-ID: 3298 |
Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
View
| Files available
| DOI
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
2011 | Conference Paper | IST-REx-ID: 3299 |
Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
View
| Files available
| DOI
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
2011 | Conference Paper | IST-REx-ID: 3301 |
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
View
| Files available
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
2011 | Conference Paper | IST-REx-ID: 3302 |
Static scheduling in clouds
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
View
| Files available
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
2011 | Conference Poster | IST-REx-ID: 3312 |
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
View
| Files available
| DOI
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3313 |
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
View
| Files available
| DOI
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
2011 | Journal Article | IST-REx-ID: 3315 |
Timed parity games: Complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
View
| Files available
| DOI
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
2011 | Conference Paper | IST-REx-ID: 3316 |
Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
View
| DOI
| Download Published Version (ext.)
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
2011 | Journal Article | IST-REx-ID: 3318 |
How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses
E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
View
| DOI
| Download Submitted Version (ext.)
E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
2011 | Journal Article | IST-REx-ID: 3320 |
Structured learning and prediction in computer vision
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
View
| Files available
| DOI
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
2011 | Conference Paper | IST-REx-ID: 3324 |
Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
View
| DOI
| Download Submitted Version (ext.)
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
2011 | Conference Paper | IST-REx-ID: 3326 |
What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
View
| Files available
| DOI
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
2011 | Conference Paper | IST-REx-ID: 3328 |
A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
View
| DOI
| Download Published Version (ext.)
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
2011 | Conference Paper | IST-REx-ID: 3329 |
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
View
| Files available
| DOI
| Download Preprint (ext.)
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
2011 | Conference Paper | IST-REx-ID: 3330 |
Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
View
| DOI
| Download Preprint (ext.)
| arXiv
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
2011 | Journal Article | IST-REx-ID: 3332 |
A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
View
| Files available
| DOI
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
2011 | Book Chapter | IST-REx-ID: 3335 |
Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
View
| DOI
| Download Preprint (ext.)
| arXiv
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
2011 | Preprint | IST-REx-ID: 3338 |
Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
View
| Files available
| Download Preprint (ext.)
| arXiv
K. Chatterjee, ArXiv (2011) 1–51.
2011 | Preprint | IST-REx-ID: 3339 |
Magnifying lens abstraction for stochastic games with discounted and long-run average objectives
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
View
| Download Preprint (ext.)
| arXiv
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
2011 | Conference Paper | IST-REx-ID: 3342 |
Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
View
| Files available
| DOI
| Download Preprint (ext.)
| arXiv
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
2011 | Conference Paper | IST-REx-ID: 3343 |
Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification
K. Chatterjee, M. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
View
| DOI
| Download Submitted Version (ext.)
K. Chatterjee, M. Henzinger, in:, SIAM, 2011, pp. 1318–1336.