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2533 Publications


2011 | Conference Poster | IST-REx-ID: 3312 | OA
Zheng, Y., Gu, S., Edelsbrunner, H., Tomasi, C., & Benfey, P. (2011). Detailed reconstruction of 3D plant root shape. Proceedings of the IEEE International Conference on Computer Vision. Barcelona, Spain: IEEE. https://doi.org/10.1109/ICCV.2011.6126475
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2011 | Conference Paper | IST-REx-ID: 3313 | OA
Chen, C., & Edelsbrunner, H. (2011). Diffusion runs low on persistence fast. In Proceedings of the IEEE International Conference on Computer Vision. Barcelona, Spain: IEEE. https://doi.org/10.1109/ICCV.2011.6126271
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2011 | Journal Article | IST-REx-ID: 3315 | OA
Chatterjee, K., Henzinger, T. A., & Prabhu, V. (2011). Timed parity games: Complexity and robustness. Logical Methods in Computer Science. International Federation of Computational Logic. https://doi.org/10.2168/LMCS-7(4:8)2011
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2011 | Conference Paper | IST-REx-ID: 3316 | OA
Bloem, R., Chatterjee, K., Greimel, K., Henzinger, T. A., & Jobstmann, B. (2011). Specification-centered robustness. In 6th IEEE International Symposium on Industrial and Embedded Systems (pp. 176–185). Vasteras, Sweden: IEEE. https://doi.org/10.1109/SIES.2011.5953660
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2011 | Journal Article | IST-REx-ID: 3318 | OA
Eggermann, E., & Jonas, P. M. (2011). How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.3002
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2011 | Journal Article | IST-REx-ID: 3320 | OA
Nowozin, S., & Lampert, C. (2011). Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. now. https://doi.org/10.1561/0600000033
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2011 | Conference Paper | IST-REx-ID: 3324 | OA
Piskac, R., & Wies, T. (2011). Decision procedures for automating termination proofs. In R. Jhala & D. Schmidt (Eds.) (Vol. 6538, pp. 371–386). Presented at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas, USA: Springer. https://doi.org/10.1007/978-3-642-18275-4_26
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2011 | Conference Paper | IST-REx-ID: 3326 | OA
Almagor, S., Boker, U., & Kupferman, O. (2011). What’s decidable about weighted automata (Vol. 6996, pp. 482–491). Presented at the ATVA: Automated Technology for Verification and Analysis, Taipei, Taiwan: Springer. https://doi.org/10.1007/978-3-642-24372-1_37
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2011 | Conference Paper | IST-REx-ID: 3328 | OA
Berberich, E., Hemmer, M., & Kerber, M. (2011). A generic algebraic kernel for non linear geometric applications (pp. 179–186). Presented at the SCG: Symposium on Computational Geometry, Paris, France: ACM. https://doi.org/10.1145/1998196.1998224
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2011 | Conference Paper | IST-REx-ID: 3329 | OA
Berberich, E., Halperin, D., Kerber, M., & Pogalnikova, R. (2011). Deconstructing approximate offsets. In Proceedings of the twenty-seventh annual symposium on Computational geometry (pp. 187–196). Paris, France: ACM. https://doi.org/10.1145/1998196.1998225
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2011 | Conference Paper | IST-REx-ID: 3330 | OA
Kerber, M., & Sagraloff, M. (2011). Root refinement for real polynomials (pp. 209–216). Presented at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California, USA: Springer. https://doi.org/10.1145/1993886.1993920
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2011 | Journal Article | IST-REx-ID: 3332 | OA
Kerber, M., & Sagraloff, M. (2011). A note on the complexity of real algebraic hypersurfaces. Graphs and Combinatorics. Springer. https://doi.org/10.1007/s00373-011-1020-7
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2011 | Book Chapter | IST-REx-ID: 3335 | OA
Van De Weygaert, R., Vegter, G., Edelsbrunner, H., Jones, B., Pranav, P., Park, C., … Teillaud, M. (2011). Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. In M. Gavrilova, K. Tan, & M. Mostafavi (Eds.), Transactions on Computational Science XIV (Vol. 6970, pp. 60–101). Springer. https://doi.org/10.1007/978-3-642-25249-5_3
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2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee, K. (2011). Bounded rationality in concurrent parity games. arXiv. ArXiv.
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2011 | Preprint | IST-REx-ID: 3339 | OA
Chatterjee, K., De Alfaro, L., & Pritam, R. (2011). Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv. ArXiv.
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2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee, K., Henzinger, M., Joglekar, M., & Nisarg, S. (2011). Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. In G. Gopalakrishnan & S. Qadeer (Eds.) (Vol. 6806, pp. 260–276). Presented at the CAV: Computer Aided Verification, Snowbird, USA: Springer. https://doi.org/10.1007/978-3-642-22110-1_21
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee, K., & Henzinger, M. (2011). Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification (pp. 1318–1336). Presented at the SODA: Symposium on Discrete Algorithms, San Francisco, USA: SIAM. https://doi.org/10.1137/1.9781611973082.101
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee, K., & Doyen, L. (2011). Energy and mean-payoff parity Markov Decision Processes (Vol. 6907, pp. 206–218). Presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland: Springer. https://doi.org/10.1007/978-3-642-22993-0_21
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil, T., Brožek, V., Chatterjee, K., Forejt, V., & Kučera, A. (2011). Two views on multiple mean payoff objectives in Markov Decision Processes. Presented at the LICS: Logic in Computer Science, Toronto, Canada: IEEE. https://doi.org/10.1109/LICS.2011.10
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee, K., & Fijalkow, N. (2011). Finitary languages (Vol. 6638, pp. 216–226). Presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain: Springer. https://doi.org/10.1007/978-3-642-21254-3_16
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee, K., & Prabhu, V. (2011). Synthesis of memory efficient real time controllers for safety objectives (pp. 221–230). Presented at the HSCC: Hybrid Systems - Computation and Control, Chicago, USA: Springer. https://doi.org/10.1145/1967701.1967734
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee, K., & Fijalkow, N. (2011). A reduction from parity games to simple stochastic games (Vol. 54, pp. 74–86). Presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy: EPTCS. https://doi.org/10.4204/EPTCS.54.6
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee, K., Doyen, L., & Singh, R. (2011). On memoryless quantitative objectives. In O. Owe, M. Steffen, & J. A. Telle (Eds.) (Vol. 6914, pp. 148–159). Presented at the FCT: Fundamentals of Computation Theory, Oslo, Norway: Springer. https://doi.org/10.1007/978-3-642-22953-4_13
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis, S., Lickly, B., Henzinger, T. A., & Lee, E. (2011). A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). ACM. https://doi.org/10.1145/1985342.1985345
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai, R., Henzinger, T. A., & Singh, V. (2011). Quantitative evaluation of BFT protocols (pp. 255–264). Presented at the QEST: Quantitative Evaluation of Systems, Aachen, Germany: IEEE. https://doi.org/10.1109/QEST.2011.40
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker, U., Chatterjee, K., Henzinger, T. A., & Kupferman, O. (2011). Temporal specifications with accumulative values. Presented at the LICS: Logic in Computer Science, Toronto, Canada: IEEE. https://doi.org/10.1109/LICS.2011.33
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger, T. A., Singh, V., Wies, T., & Zufferey, D. (2011). Scheduling large jobs by abstraction refinement (pp. 329–342). Presented at the EuroSys, Salzburg, Austria: ACM. https://doi.org/10.1145/1966445.1966476
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker, U., & Henzinger, T. A. (2011). Determinizing discounted-sum automata (Vol. 12, pp. 82–96). Presented at the CSL: Computer Science Logic, Bergen, Norway: Springer. https://doi.org/10.4230/LIPIcs.CSL.2011.82
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny, P., Chatterjee, K., & Henzinger, T. A. (2011). The complexity of quantitative information flow problems (pp. 205–217). Presented at the CSF: Computer Security Foundations, Cernay-la-Ville, France: IEEE. https://doi.org/10.1109/CSF.2011.21
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher, J., Henzinger, T. A., Nickovic, D., Piterman, N., Singh, A., & Vardi, M. (2011). Dynamic reactive modules (Vol. 6901, pp. 404–418). Presented at the CONCUR: Concurrency Theory, Aachen, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-642-23217-6_27
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee, K., Henzinger, T. A., & Tracol, M. (n.d.). The decidability frontier for probabilistic automata on infinite words. ArXiv.
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier, F., Henzinger, T. A., Mateescu, M., & Wolf, V. (2011). Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2010.10.022
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee, K., Henzinger, T. A., Jobstmann, B., & Singh, R. (2011). QUASY: quantitative synthesis tool (Vol. 6605, pp. 267–271). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Saarbrucken, Germany: Springer. https://doi.org/10.1007/978-3-642-19835-9_24
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny, P., Chatterjee, K., Henzinger, T. A., Radhakrishna, A., & Singh, R. (2011). Quantitative synthesis for concurrent programs. In G. Gopalakrishnan & S. Qadeer (Eds.) (Vol. 6806, pp. 243–259). Presented at the CAV: Computer Aided Verification, Snowbird, USA: Springer. https://doi.org/10.1007/978-3-642-22110-1_20
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens, G., Möllmert, S., & Heisenberg, C.-P. J. (2011). Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1010767108
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2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok, A. (2011). Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. Oxford University Press. https://doi.org/10.1093/sysbio/syq086
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt, M. K., & Parent, C. (2011). Cells on the move in Philadelphia. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1091/mbc.E10-12-0958
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot, P., Abe, J., Alcock, J., Alizon, S., Alpedrinha, J., Andersson, M., … Zink, A. (2011). Inclusive fitness theory and eusociality. Nature. Nature Publishing Group. https://doi.org/10.1038/nature09831
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel, M., Behrndt, M., Jannasch, A., Schaeffer, E., & Grill, S. (2011). Measuring the complete force field of an optical trap. Optics Letters. OSA. https://doi.org/10.1364/OL.36.001260
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkačik, G., & Walczak, A. (2011). Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. IOP Publishing Ltd. https://doi.org/10.1088/0953-8984/23/15/153102
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar, H., & Barton, N. H. (2011). The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. Royal Society of London. https://doi.org/10.1098/rsif.2010.0438
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach, M. T., & Kishony, R. (2011). Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. Cell Press. https://doi.org/10.1016/j.molcel.2011.04.016
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner, H., Morozov, D., & Patel, A. (2011). Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-011-9090-8
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row, R., Maître, J.-L., Martin, B., Stockinger, P., Heisenberg, C.-P. J., & Kimelman, D. (2011). Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. Elsevier. https://doi.org/10.1016/j.ydbio.2011.03.025
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran, S., & Barton, N. H. (2011). Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. Cambridge University Press. https://doi.org/10.1017/S0016672311000115
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger, T. A., Jobstmann, B., & Wolf, V. (2011). Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. World Scientific Publishing. https://doi.org/10.1142/S0129054111008441
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik, G., Garrigan, P., Ratliff, C., Milcinski, G., Klein, J., Seyfarth, L., … Balasubramanian, V. (2011). Natural images from the birthplace of the human eye. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0020409
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok, A. (2011). Split based computation of majority rule supertrees. BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-11-205
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig, L. V., Nielsen, P., Boomsma, J., & Nash, D. (2011). Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-11-201
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2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton, N. H., & Etheridge, A. (2011). The relation between reproductive value and genetic contribution. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.111.127555
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