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2372 Publications


2011 | Book Chapter | IST-REx-ID: 3335 | OA
Van De Weygaert, Rien, et al. “Alpha, Betti and the Megaparsec Universe: On the Topology of the Cosmic Web.” Transactions on Computational Science XIV, edited by Marina Gavrilova et al., vol. 6970, Springer, 2011, pp. 60–101, doi:10.1007/978-3-642-25249-5_3.
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2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee, Krishnendu. “Bounded Rationality in Concurrent Parity Games.” ArXiv, ArXiv, 2011, pp. 1–51.
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2011 | Preprint | IST-REx-ID: 3339 | OA
Chatterjee, Krishnendu, et al. “Magnifying Lens Abstraction for Stochastic Games with Discounted and Long-Run Average Objectives.” ArXiv, ArXiv, 2011.
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2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee, Krishnendu, et al. Symbolic Algorithms for Qualitative Analysis of Markov Decision Processes with Büchi Objectives. Edited by Ganesh Gopalakrishnan and Shaz Qadeer, vol. 6806, Springer, 2011, pp. 260–76, doi:10.1007/978-3-642-22110-1_21.
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee, Krishnendu, and Monika Henzinger. Faster and Dynamic Algorithms for Maximal End Component Decomposition and Related Graph Problems in Probabilistic Verification. SIAM, 2011, pp. 1318–36, doi:10.1137/1.9781611973082.101.
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee, Krishnendu, and Laurent Doyen. Energy and Mean-Payoff Parity Markov Decision Processes. Vol. 6907, Springer, 2011, pp. 206–18, doi:10.1007/978-3-642-22993-0_21.
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil, Tomáš, et al. Two Views on Multiple Mean Payoff Objectives in Markov Decision Processes. 5970225, IEEE, 2011, doi:10.1109/LICS.2011.10.
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee, Krishnendu, and Nathanaël Fijalkow. Finitary Languages. Vol. 6638, Springer, 2011, pp. 216–26, doi:10.1007/978-3-642-21254-3_16.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee, Krishnendu, and Vinayak Prabhu. Synthesis of Memory Efficient Real Time Controllers for Safety Objectives. Springer, 2011, pp. 221–30, doi:10.1145/1967701.1967734.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee, Krishnendu, and Nathanaël Fijalkow. A Reduction from Parity Games to Simple Stochastic Games. Vol. 54, EPTCS, 2011, pp. 74–86, doi:10.4204/EPTCS.54.6.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee, Krishnendu, et al. On Memoryless Quantitative Objectives. Edited by Olaf Owe et al., vol. 6914, Springer, 2011, pp. 148–59, doi:10.1007/978-3-642-22953-4_13.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis, Stavros, et al. “A Theory of Synchronous Relational Interfaces.” ACM Transactions on Programming Languages and Systems (TOPLAS), vol. 33, no. 4, 14, ACM, 2011, doi:10.1145/1985342.1985345.
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai, Raluca, et al. Quantitative Evaluation of BFT Protocols. IEEE, 2011, pp. 255–64, doi:10.1109/QEST.2011.40.
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker, Udi, et al. Temporal Specifications with Accumulative Values. 5970226, IEEE, 2011, doi:10.1109/LICS.2011.33.
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger, Thomas A., et al. Scheduling Large Jobs by Abstraction Refinement. ACM, 2011, pp. 329–42, doi:10.1145/1966445.1966476.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker, Udi, and Thomas A. Henzinger. Determinizing Discounted-Sum Automata. Vol. 12, Springer, 2011, pp. 82–96, doi:10.4230/LIPIcs.CSL.2011.82.
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny, Pavol, et al. The Complexity of Quantitative Information Flow Problems. IEEE, 2011, pp. 205–17, doi:10.1109/CSF.2011.21.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher, Jasmin, et al. Dynamic Reactive Modules. Vol. 6901, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–18, doi:10.1007/978-3-642-23217-6_27.
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee, Krishnendu, et al. The Decidability Frontier for Probabilistic Automata on Infinite Words. ArXiv.
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier, Frédéric, et al. “Approximation of Event Probabilities in Noisy Cellular Processes.” Theoretical Computer Science, vol. 412, no. 21, Elsevier, 2011, pp. 2128–41, doi:10.1016/j.tcs.2010.10.022.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee, Krishnendu, et al. QUASY: Quantitative Synthesis Tool. Vol. 6605, Springer, 2011, pp. 267–71, doi:10.1007/978-3-642-19835-9_24.
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny, Pavol, et al. Quantitative Synthesis for Concurrent Programs. Edited by Ganesh Gopalakrishnan and Shaz Qadeer, vol. 6806, Springer, 2011, pp. 243–59, doi:10.1007/978-3-642-22110-1_20.
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens, Gabriel, et al. “Enveloping Cell Layer Differentiation at the Surface of Zebrafish Germ Layer Tissue Explants.” PNAS, vol. 108, no. 3, National Academy of Sciences, 2011, pp. E9–10, doi:10.1073/pnas.1010767108.
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2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok, Anne. “Consequences of Different Null Models on the Tree Shape Bias of Supertree Methods.” Systematic Biology, vol. 60, no. 2, Oxford University Press, 2011, pp. 218–25, doi:10.1093/sysbio/syq086.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt, Michael K., and Carole Parent. “Cells on the Move in Philadelphia.” Molecular Biology and Evolution, vol. 22, no. 6, Oxford University Press, 2011, p. 724, doi:10.1091/mbc.E10-12-0958.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot, Patrick, et al. “Inclusive Fitness Theory and Eusociality.” Nature, vol. 471, no. 7339, Nature Publishing Group, 2011, pp. E1–4, doi:10.1038/nature09831.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel, Marcus, et al. “Measuring the Complete Force Field of an Optical Trap.” Optics Letters, vol. 36, no. 7, OSA, 2011, pp. 1260–62, doi:10.1364/OL.36.001260.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkacik, Gasper, and Aleksandra Walczak. “Information Transmission in Genetic Regulatory Networks a Review.” Journal of Physics: Condensed Matter, vol. 23, no. 15, 153102, IOP Publishing Ltd., 2011, doi:10.1088/0953-8984/23/15/153102.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar, Harold, and Nicholas H. Barton. “The Statistical Mechanics of a Polygenic Character under Stabilizing Selection Mutation and Drift.” Journal of the Royal Society Interface, vol. 8, no. 58, Royal Society of London, 2011, pp. 720–39, doi:10.1098/rsif.2010.0438.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach, Mark Tobias, and Roy Kishony. “Resolution of Gene Regulatory Conflicts Caused by Combinations of Antibiotics.” Molecular Cell, vol. 42, no. 4, Cell Press, 2011, pp. 413–25, doi:10.1016/j.molcel.2011.04.016.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner, Herbert, et al. “Quantifying Transversality by Measuring the Robustness of Intersections.” Foundations of Computational Mathematics, vol. 11, no. 3, Springer, 2011, pp. 345–61, doi:10.1007/s10208-011-9090-8.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row, Richard, et al. “Completion of the Epithelial to Mesenchymal Transition in Zebrafish Mesoderm Requires Spadetail.” Developmental Biology, vol. 354, no. 1, Elsevier, 2011, pp. 102–10, doi:10.1016/j.ydbio.2011.03.025.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran, Sayanthan, and Nicholas H. Barton. “Mapping Mendelian Traits in Asexual Progeny Using Changes in Marker Allele Frequency.” Genetical Research, vol. 93, no. 3, Cambridge University Press, 2011, pp. 221–32, doi:10.1017/S0016672311000115.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger, Thomas A., et al. “Formalisms for Specifying Markovian Population Models.” IJFCS: International Journal of Foundations of Computer Science, vol. 22, no. 4, World Scientific Publishing, 2011, pp. 823–41, doi:10.1142/S0129054111008441.
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik, Gašper, et al. “Natural Images from the Birthplace of the Human Eye.” PLoS One, vol. 6, no. 6, e20409, Public Library of Science, 2011, doi:10.1371/journal.pone.0020409.
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok, Anne. “Split Based Computation of Majority Rule Supertrees.” BMC Evolutionary Biology, vol. 11, no. 205, 205, BioMed Central, 2011, doi:10.1186/1471-2148-11-205.
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig, Line V., et al. “Reconstructing Eight Decades of Genetic Variation in an Isolated Danish Population of the Large Blue Butterfly Maculinea Arion.” BMC Evolutionary Biology, vol. 11, no. 201, 201, BioMed Central, 2011, doi:10.1186/1471-2148-11-201.
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2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton, Nicholas H., and Alison Etheridge. “The Relation between Reproductive Value and Genetic Contribution.” Genetics, vol. 188, no. 4, Genetics Society of America, 2011, pp. 953–73, doi:10.1534/genetics.111.127555.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
de Vladar, Harold, and Nicholas H. Barton. “The Contribution of Statistical Physics to Evolutionary Biology.” Trends in Ecology and Evolution, vol. 26, no. 8, Cell Press, 2011, pp. 424–32, doi:10.1016/j.tree.2011.04.002.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton, Nicholas H., and Michael Turelli. “Spatial Waves of Advance with Bistable Dynamics: Cytoplasmic and Genetic Analogues of Allee Effects.” American Naturalist, vol. 178, no. 3, University of Chicago Press, 2011, pp. E48–75, doi:10.1086/661246.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Polechova, Jitka, and Nicholas H. Barton. “Genetic Drift Widens the Expected Cline but Narrows the Expected Cline Width.” Genetics, vol. 189, no. 1, Genetics Society of America, 2011, pp. 227–35, doi:10.1534/genetics.111.129817.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger, Petra, et al. “Defective Neuroepithelial Cell Cohesion Affects Tangential Branchiomotor Neuron Migration in the Zebrafish Neural Tube.” Development, vol. 138, no. 21, Company of Biologists, 2011, pp. 4673–83, doi:10.1242/dev.071233.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
Maître, Jean-Léon, and Carl-Philipp J. Heisenberg. “The Role of Adhesion Energy in Controlling Cell-Cell Contacts.” Current Opinion in Cell Biology, vol. 23, no. 5, Elsevier, 2011, pp. 508–14, doi:10.1016/j.ceb.2011.07.004.
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2011 | Journal Article | IST-REx-ID: 3399 | OA
Cremer, Sylvia, et al. “Competition and Opportunity Shape the Reproductive Tactics of Males in the Ant Cardiocondyla Obscurior.” PLoS One, vol. 6, no. 3, e17323, Public Library of Science, 2011, doi:10.1371/journal.pone.0017323.
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2011 | Journal Article | IST-REx-ID: 3405 | OA
Janovjak, Harald L., et al. “Modern Ionotropic Glutamate Receptor with a K+ Selectivity Signature Sequence.” Nature Communications, vol. 2, no. 232, Nature Publishing Group, 2011, pp. 1–6, doi:10.1038/ncomms1231.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
Sixt, Michael K., and Tim Lämmermann. “In Vitro Analysis of Chemotactic Leukocyte Migration in 3D Environments.” Cell Migration, vol. 769, Springer, 2011, pp. 149–65, doi:10.1007/978-1-61779-207-6_11.
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton, Nicholas H. “Estimating Linkage Disequilibria.” Heredity, vol. 106, no. 2, Nature Publishing Group, 2011, pp. 205–06, doi:10.1038/hdy.2010.67.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero, Ferran, et al. “Scyllarus Arctus (Crustacea: Decapoda: Scyllaridae) Final Stage Phyllosoma Identified by DNA Analysis, with Morphological Description.” Journal of the Marine Biological Association of the United Kingdom, vol. 91, no. 2, Cambridge University Press, 2011, pp. 485–92, doi:10.1017/S0025315410000287.
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Edelsbrunner, Herbert, and Michael Kerber. “Covering and Packing with Spheres by Diagonal Distortion in R^n.” Rainbow of Computer Science, edited by Cristian Calude et al., vol. 6570, Springer, 2011, pp. 20–35, doi:10.1007/978-3-642-19391-0_2.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok, Anne, et al. “Accuracy of Phylogeny Reconstruction Methods Combining Overlapping Gene Data Sets .” Algorithms for Molecular Biology, vol. 5, no. 1, 37, BioMed Central, 2010, doi:10.1186/1748-7188-5-37.
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