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2372 Publications


2011 | Book Chapter | IST-REx-ID: 3335 | OA
Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen M, Caroli M, Teillaud M. 2011. Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. Transactions on Computational Science XIV. Special Issue on Voronoi Diagrams and Delaunay Triangulation, LNCS, vol. 6970. 60–101.
View | DOI | Download Preprint (ext.) | arXiv
 

2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee K. 2011. Bounded rationality in concurrent parity games. arXiv., 1–51.
View | Files available | Download Preprint (ext.) | arXiv
 

2011 | Preprint | IST-REx-ID: 3339 | OA
Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv.
View | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee K, Henzinger M, Joglekar M, Nisarg S. 2011. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. CAV: Computer Aided Verification, LNCS, vol. 6806. 260–276.
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee K, Henzinger M. 2011. Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification. SODA: Symposium on Discrete Algorithms 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6907. 206–218.
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee K, Fijalkow N. 2011. Finitary languages. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 216–226.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee K, Prabhu V. 2011. Synthesis of memory efficient real time controllers for safety objectives. HSCC: Hybrid Systems - Computation and Control 221–230.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee K, Fijalkow N. 2011. A reduction from parity games to simple stochastic games. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 54. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee K, Doyen L, Singh R. 2011. On memoryless quantitative objectives. FCT: Fundamentals of Computation Theory, LNCS, vol. 6914. 148–159.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4).
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai R, Henzinger TA, Singh V. 2011. Quantitative evaluation of BFT protocols. QEST: Quantitative Evaluation of Systems 255–264.
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values. LICS: Logic in Computer Science
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger TA, Singh V, Wies T, Zufferey D. 2011. Scheduling large jobs by abstraction refinement. EuroSys 329–342.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12. 82–96.
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny P, Chatterjee K, Henzinger TA. 2011. The complexity of quantitative information flow problems. CSF: Computer Security Foundations 205–217.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901. 404–418.
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
View | Download Preprint (ext.) | arXiv
 

2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2011. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 412(21), 2128–2141.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605. 267–271.
View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. 2011. Quantitative synthesis for concurrent programs. CAV: Computer Aided Verification, LNCS, vol. 6806. 243–259.
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens G, Möllmert S, Heisenberg C-PJ. 2011. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 108(3), E9–E10.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkacik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15), 153102.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar H, Barton NH. 2011. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 8(58), 720–739.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach MT, Kishony R. 2011. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 42(4), 413–425.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner H, Morozov D, Patel A. 2011. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 11(3), 345–361.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. 2011. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1), 102–110.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran S, Barton NH. 2011. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 93(3), 221–232.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger TA, Jobstmann B, Wolf V. 2011. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 22(4), 823–841.
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6).
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. 2011. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 11(205).
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. 2011. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 11(201).
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Polechova J, Barton NH. 2011. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 189(1), 227–235.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.
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2011 | Journal Article | IST-REx-ID: 3399 | OA
Cremer S, Schrempf A, Heinze J. 2011. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 6(3).
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2011 | Journal Article | IST-REx-ID: 3405 | OA
Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Edelsbrunner H, Kerber M. 2011. Covering and packing with spheres by diagonal distortion in R^n. Rainbow of Computer Science. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday, LNCS, vol. 6570. 20–35.
View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1).
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