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2372 Publications


2011 | Book Chapter | IST-REx-ID: 3335 | OA
Van De Weygaert R, Vegter G, Edelsbrunner H, et al. Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. In: Gavrilova M, Tan K, Mostafavi M, eds. Transactions on Computational Science XIV. Vol 6970. Special Issue on Voronoi Diagrams and Delaunay Triangulation. Springer; 2011:60-101. doi:10.1007/978-3-642-25249-5_3
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2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee K. Bounded rationality in concurrent parity games. arXiv. 2011:1-51.
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2011 | Preprint | IST-REx-ID: 3339 | OA
Chatterjee K, De Alfaro L, Pritam R. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv. 2011.
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2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee K, Henzinger M, Joglekar M, Nisarg S. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. In: Gopalakrishnan G, Qadeer S, eds. Vol 6806. Springer; 2011:260-276. doi:10.1007/978-3-642-22110-1_21
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee K, Henzinger M. Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification. In: SIAM; 2011:1318-1336. doi:10.1137/1.9781611973082.101
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee K, Doyen L. Energy and mean-payoff parity Markov Decision Processes. In: Vol 6907. Springer; 2011:206-218. doi:10.1007/978-3-642-22993-0_21
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. Two views on multiple mean payoff objectives in Markov Decision Processes. In: IEEE; 2011. doi:10.1109/LICS.2011.10
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee K, Fijalkow N. Finitary languages. In: Vol 6638. Springer; 2011:216-226. doi:10.1007/978-3-642-21254-3_16
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee K, Prabhu V. Synthesis of memory efficient real time controllers for safety objectives. In: Springer; 2011:221-230. doi:10.1145/1967701.1967734
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee K, Fijalkow N. A reduction from parity games to simple stochastic games. In: Vol 54. EPTCS; 2011:74-86. doi:10.4204/EPTCS.54.6
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee K, Doyen L, Singh R. On memoryless quantitative objectives. In: Owe O, Steffen M, Telle JA, eds. Vol 6914. Springer; 2011:148-159. doi:10.1007/978-3-642-22953-4_13
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 2011;33(4). doi:10.1145/1985342.1985345
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai R, Henzinger TA, Singh V. Quantitative evaluation of BFT protocols. In: IEEE; 2011:255-264. doi:10.1109/QEST.2011.40
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. Temporal specifications with accumulative values. In: IEEE; 2011. doi:10.1109/LICS.2011.33
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger TA, Singh V, Wies T, Zufferey D. Scheduling large jobs by abstraction refinement. In: ACM; 2011:329-342. doi:10.1145/1966445.1966476
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker U, Henzinger TA. Determinizing discounted-sum automata. In: Vol 12. Springer; 2011:82-96. doi:10.4230/LIPIcs.CSL.2011.82
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny P, Chatterjee K, Henzinger TA. The complexity of quantitative information flow problems. In: IEEE; 2011:205-217. doi:10.1109/CSF.2011.21
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. Dynamic reactive modules. In: Vol 6901. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2011:404-418. doi:10.1007/978-3-642-23217-6_27
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 2011;412(21):2128-2141. doi:10.1016/j.tcs.2010.10.022
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. QUASY: quantitative synthesis tool. In: Vol 6605. Springer; 2011:267-271. doi:10.1007/978-3-642-19835-9_24
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. Quantitative synthesis for concurrent programs. In: Gopalakrishnan G, Qadeer S, eds. Vol 6806. Springer; 2011:243-259. doi:10.1007/978-3-642-22110-1_20
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens G, Möllmert S, Heisenberg C-PJ. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 2011;108(3):E9-E10. doi:10.1073/pnas.1010767108
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 2011;60(2):218-225. doi:10.1093/sysbio/syq086
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt MK, Parent C. Cells on the move in Philadelphia. Molecular Biology and Evolution. 2011;22(6):724. doi:10.1091/mbc.E10-12-0958
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot P, Abe J, Alcock J, et al. Inclusive fitness theory and eusociality. Nature. 2011;471(7339):E1-E4. doi:10.1038/nature09831
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. Measuring the complete force field of an optical trap. Optics Letters. 2011;36(7):1260-1262. doi:10.1364/OL.36.001260
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkacik G, Walczak A. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 2011;23(15). doi:10.1088/0953-8984/23/15/153102
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar H, Barton NH. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 2011;8(58):720-739. doi:10.1098/rsif.2010.0438
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach MT, Kishony R. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 2011;42(4):413-425. doi:10.1016/j.molcel.2011.04.016
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner H, Morozov D, Patel A. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 2011;11(3):345-361. doi:10.1007/s10208-011-9090-8
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 2011;354(1):102-110. doi:10.1016/j.ydbio.2011.03.025
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran S, Barton NH. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 2011;93(3):221-232. doi:10.1017/S0016672311000115
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger TA, Jobstmann B, Wolf V. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 2011;22(4):823-841. doi:10.1142/S0129054111008441
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik G, Garrigan P, Ratliff C, et al. Natural images from the birthplace of the human eye. PLoS One. 2011;6(6). doi:10.1371/journal.pone.0020409
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 2011;11(205). doi:10.1186/1471-2148-11-205
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 2011;11(201). doi:10.1186/1471-2148-11-201
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2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton NH, Etheridge A. The relation between reproductive value and genetic contribution. Genetics. 2011;188(4):953-973. doi:10.1534/genetics.111.127555
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2011 | Journal Article | IST-REx-ID: 3391 | OA
de Vladar H, Barton NH. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 2011;26(8):424-432. doi:10.1016/j.tree.2011.04.002
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton NH, Turelli M. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 2011;178(3):E48-E75. doi:10.1086/661246
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Polechova J, Barton NH. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 2011;189(1):227-235. doi:10.1534/genetics.111.129817
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger P, Heisenberg C-PJ, Maître J-L. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 2011;138(21):4673-4683. doi:10.1242/dev.071233
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2011 | Journal Article | IST-REx-ID: 3397 | OA
Maître J-L, Heisenberg C-PJ. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 2011;23(5):508-514. doi:10.1016/j.ceb.2011.07.004
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2011 | Journal Article | IST-REx-ID: 3399 | OA
Cremer S, Schrempf A, Heinze J. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 2011;6(3). doi:10.1371/journal.pone.0017323
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2011 | Journal Article | IST-REx-ID: 3405 | OA
Janovjak HL, Sandoz G, Isacoff E. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2011;2(232):1-6. doi:10.1038/ncomms1231
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2011 | Journal Article | IST-REx-ID: 3505 | OA
Sixt MK, Lämmermann T. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 2011;769:149-165. doi:10.1007/978-1-61779-207-6_11
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton NH. Estimating linkage disequilibria. Heredity. 2011;106(2):205-206. doi:10.1038/hdy.2010.67
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero F, Guerao G, Clark P, Abello P. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 2011;91(2):485-492. doi:10.1017/S0025315410000287
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Edelsbrunner H, Kerber M. Covering and packing with spheres by diagonal distortion in R^n. In: Calude C, Rozenberg G, Salomaa A, eds. Rainbow of Computer Science. Vol 6570. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday. Springer; 2011:20-35. doi:10.1007/978-3-642-19391-0_2
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 2010;5(1). doi:10.1186/1748-7188-5-37
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