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1724 Publications
2011 | Journal Article | IST-REx-ID: 3379 
Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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| PubMed | Europe PMC
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
2011 | Conference Paper | IST-REx-ID: 3348
Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
2011 | Conference Poster | IST-REx-ID: 3312
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
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Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3298
Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
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K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
2011 | Conference Paper | IST-REx-ID: 3301
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
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T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
2011 | Conference Paper | IST-REx-ID: 3313
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
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C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
2011 | Journal Article | IST-REx-ID: 3318
How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses
E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
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E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
2011 | Journal Article | IST-REx-ID: 3387
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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A. Kupczok, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3394
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
2011 | Journal Article | IST-REx-ID: 3399
Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
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S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3368
Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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| PubMed | Europe PMC
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
2011 | Journal Article | IST-REx-ID: 3370
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3375
The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
2011 | Journal Article | IST-REx-ID: 490
BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
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A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
2011 | Journal Article | IST-REx-ID: 469
Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
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N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
2011 | Technical Report | IST-REx-ID: 5383
On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
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T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
2011 | Preprint | IST-REx-ID: 3363
The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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| arXiv
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
2011 | Conference Paper | IST-REx-ID: 3349
A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
2011 | Conference Paper | IST-REx-ID: 3351
On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
2010 | Journal Article | IST-REx-ID: 3787
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
2010 | Conference Paper | IST-REx-ID: 3838
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
2010 | Conference Paper | IST-REx-ID: 3852
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
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| arXiv
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
2010 | Conference Paper | IST-REx-ID: 3845
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
2010 | Conference Paper | IST-REx-ID: 4381
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
2010 | Conference Paper | IST-REx-ID: 489
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
2010 | Technical Report | IST-REx-ID: 5391
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
2010 | Journal Article | IST-REx-ID: 3303
The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
2010 | Conference Paper | IST-REx-ID: 3719
Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
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| arXiv
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
2010 | Journal Article | IST-REx-ID: 3776
Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
2010 | Journal Article | IST-REx-ID: 3790
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
2010 | Book Chapter | IST-REx-ID: 3795
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
2010 | Journal Article | IST-REx-ID: 3834
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
2010 | Conference Paper | IST-REx-ID: 3839
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
2010 | Conference Paper | IST-REx-ID: 3853
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
2010 | Conference Paper | IST-REx-ID: 3860
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
2010 | Journal Article | IST-REx-ID: 4243
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
2010 | Conference Paper | IST-REx-ID: 4382
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
2010 | Journal Article | IST-REx-ID: 3772
Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010).
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N.H. Barton, PLoS Genetics 6 (2010).
2010 | Journal Article | IST-REx-ID: 3777
Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
2010 | Conference Paper | IST-REx-ID: 3847
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
2010 | Conference Paper | IST-REx-ID: 3866
Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
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R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
2010 | Conference Paper | IST-REx-ID: 4369
From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
2010 | Conference Paper | IST-REx-ID: 4388
GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
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| arXiv
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
2010 | Journal Article | IST-REx-ID: 3773
What role does natural selection play in speciation?
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
2010 | Journal Article | IST-REx-ID: 3901
Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
2010 | Book | IST-REx-ID: 4346
Handbuch Bibliothek 2.0
P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
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P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
2010 | Book Chapter | IST-REx-ID: 4339
Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch
J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
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J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
2010 | Conference Paper | IST-REx-ID: 4396
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
2010 | Conference Paper | IST-REx-ID: 4389
Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
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L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
2010 | Journal Article | IST-REx-ID: 2409
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).