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3158 Publications
2011 | Journal Article | IST-REx-ID: 3288 |

Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
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M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3290 |

A general method for calculating likelihoods under the coalescent process
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
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K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
2011 | Conference Paper | IST-REx-ID: 3297 |

Liquid simulation with mesh-based surface tracking
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
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C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
2011 | Conference Paper | IST-REx-ID: 3298 |

Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
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K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
2011 | Conference Paper | IST-REx-ID: 3299 |

Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
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T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
2011 | Conference Paper | IST-REx-ID: 3301 |

Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
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T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
2011 | Conference Paper | IST-REx-ID: 3302 |

Static scheduling in clouds
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
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T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
2011 | Conference Poster | IST-REx-ID: 3312 |

Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
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Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3313 |

Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
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C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
2011 | Journal Article | IST-REx-ID: 3315 |

Timed parity games: Complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
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K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
2011 | Conference Paper | IST-REx-ID: 3316 |

Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
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R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
2011 | Journal Article | IST-REx-ID: 3318 |

How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses
E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
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E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
2011 | Journal Article | IST-REx-ID: 3320 |

Structured learning and prediction in computer vision
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
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S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
2011 | Conference Paper | IST-REx-ID: 3324 |

Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
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R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
2011 | Conference Paper | IST-REx-ID: 3326 |

What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
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S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
2011 | Conference Paper | IST-REx-ID: 3328 |

A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
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E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
2011 | Conference Paper | IST-REx-ID: 3329 |

Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
2011 | Conference Paper | IST-REx-ID: 3330 |

Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
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| arXiv
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
2011 | Journal Article | IST-REx-ID: 3332 |

A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
2011 | Book Chapter | IST-REx-ID: 3335 |

Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
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| arXiv
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
2011 | Preprint | IST-REx-ID: 3338 |

Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
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| arXiv
K. Chatterjee, ArXiv (2011) 1–51.
2011 | Preprint | IST-REx-ID: 3339 |

Magnifying lens abstraction for stochastic games with discounted and long-run average objectives
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
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| arXiv
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
2011 | Conference Paper | IST-REx-ID: 3345 |

Energy and mean-payoff parity Markov Decision Processes
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
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| arXiv
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
2011 | Conference Paper | IST-REx-ID: 3346 |

Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3347 |

Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
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| arXiv
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
2011 | Conference Paper | IST-REx-ID: 3348 |

Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
2011 | Conference Paper | IST-REx-ID: 3349 |

A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
2011 | Conference Paper | IST-REx-ID: 3351 |

On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
2011 | Journal Article | IST-REx-ID: 3353 |

A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
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S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
2011 | Conference Paper | IST-REx-ID: 3355 |

Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
2011 | Conference Paper | IST-REx-ID: 3356 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3358 |

Scheduling large jobs by abstraction refinement
T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
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T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
2011 | Conference Paper | IST-REx-ID: 3360 |

Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
2011 | Conference Paper | IST-REx-ID: 3361 |

The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
2011 | Conference Paper | IST-REx-ID: 3362 |

Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
2011 | Preprint | IST-REx-ID: 3363 |

The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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| arXiv
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
2011 | Journal Article | IST-REx-ID: 3364 |

Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
2011 | Conference Paper | IST-REx-ID: 3365 |

QUASY: quantitative synthesis tool
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
2011 | Conference Paper | IST-REx-ID: 3366 |

Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
2011 | Journal Article | IST-REx-ID: 3368 |

Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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| PubMed | Europe PMC
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
2011 | Journal Article | IST-REx-ID: 3370 |

Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3371 |

Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
2011 | Journal Article | IST-REx-ID: 3372 |

Inclusive fitness theory and eusociality
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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| PubMed | Europe PMC
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
2011 | Journal Article | IST-REx-ID: 3373 |

Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
2011 | Journal Article | IST-REx-ID: 3374 |

Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
2011 | Journal Article | IST-REx-ID: 3375 |

The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
2011 | Journal Article | IST-REx-ID: 3376 |

Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
2011 | Journal Article | IST-REx-ID: 3377 |

Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
2011 | Journal Article | IST-REx-ID: 3379 |

Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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| PubMed | Europe PMC
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
2011 | Journal Article | IST-REx-ID: 3380 |

Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
2011 | Journal Article | IST-REx-ID: 3381 |

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
2011 | Journal Article | IST-REx-ID: 3384 |

Natural images from the birthplace of the human eye
G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
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G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3387 |

Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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| DOI
A. Kupczok, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3388 |

Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
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| DOI
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3390 |

The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
2011 | Journal Article | IST-REx-ID: 3391 |

The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
2011 | Journal Article | IST-REx-ID: 3393 |

Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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| DOI
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
2011 | Journal Article | IST-REx-ID: 3394 |

Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
2011 | Journal Article | IST-REx-ID: 3396 |

Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
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| DOI
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
2011 | Journal Article | IST-REx-ID: 3397 |

The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
2011 | Journal Article | IST-REx-ID: 3399 |

Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
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| DOI
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3405 |

Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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| DOI
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
2011 | Journal Article | IST-REx-ID: 469 |

Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
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N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
2011 | Journal Article | IST-REx-ID: 490 |

BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
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| DOI
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
2011 | Journal Article | IST-REx-ID: 518 |

CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
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| Download Submitted Version (ext.)
| PubMed | Europe PMC
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
2011 | Journal Article | IST-REx-ID: 531 |

Verification of STM on relaxed memory models
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
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R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
2011 | Technical Report | IST-REx-ID: 5380 |

Bounded rationality in concurrent parity games
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
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| DOI
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5381 |

Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
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K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5382 |

Robustness of structurally equivalent concurrent parity games
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
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| DOI
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5383 |

On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
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| DOI
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5384 |

Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
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| Files available
| DOI
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5385 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
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| DOI
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5387 |

Energy and mean-payoff parity Markov decision processes
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
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| Files available
| DOI
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
2011 | Journal Article | IST-REx-ID: 6496 |

Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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| Download Published Version (ext.)
| PubMed | Europe PMC
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
2011 | Conference Paper | IST-REx-ID: 9648 |

Incremental-decremental algorithm for computing AT-models and persistent homology
R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
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R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
2011 | Journal Article | IST-REx-ID: 3505 |

In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
2011 | Journal Article | IST-REx-ID: 3778 |

Estimating linkage disequilibria
N.H. Barton, Heredity 106 (2011) 205–206.
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| PubMed | Europe PMC
N.H. Barton, Heredity 106 (2011) 205–206.
2011 | Journal Article | IST-REx-ID: 3784 |

Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
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F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
2011 | Book Chapter | IST-REx-ID: 3796 |

Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
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H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
2011 | Technical Report | IST-REx-ID: 5386 |

Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
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| DOI
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
2011 | Book Chapter | IST-REx-ID: 3311 |

Alpha shapes - a survey
H. Edelsbrunner, in:, R. van de Weygaert, G. Vegter, J. Ritzerveld, V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, Springer, n.d.
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H. Edelsbrunner, in:, R. van de Weygaert, G. Vegter, J. Ritzerveld, V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, Springer, n.d.
2011 | Conference Paper | IST-REx-ID: 3342 |

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
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| arXiv
K. Chatterjee, M.H. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
2011 | Conference Paper | IST-REx-ID: 3343 |

Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification
K. Chatterjee, M.H. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
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K. Chatterjee, M.H. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
2011 | Technical Report | IST-REx-ID: 5379 |

An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M.H. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
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| DOI
K. Chatterjee, M.H. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
2010 | Journal Article | IST-REx-ID: 3303 |

The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
2010 | Conference Paper | IST-REx-ID: 488 |

Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
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R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
2010 | Conference Paper | IST-REx-ID: 489 |

How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
2010 | Technical Report | IST-REx-ID: 5388 |

Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
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| DOI
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5389 |

Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
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| DOI
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5390 |

Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
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| DOI
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5391 |

Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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| Files available
| DOI
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
2010 | Journal Article | IST-REx-ID: 2409 |

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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| DOI
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2010 | Conference Paper | IST-REx-ID: 3719 |

Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
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| arXiv
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
2010 | Journal Article | IST-REx-ID: 3772 |

Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010).
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| DOI
N.H. Barton, PLoS Genetics 6 (2010).
2010 | Journal Article | IST-REx-ID: 3773 |

What role does natural selection play in speciation?
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
2010 | Journal Article | IST-REx-ID: 3776 |

Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
2010 | Journal Article | IST-REx-ID: 3777 |

Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
2010 | Journal Article | IST-REx-ID: 3779 |

Cryptic variation between species and the basis of hybrid performance
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
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| DOI
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
2010 | Journal Article | IST-REx-ID: 3787 |

DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
2010 | Journal Article | IST-REx-ID: 3790 |

Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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| Files available
| DOI
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).