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2698 Publications


2011 | Journal Article | IST-REx-ID: 3371 | OA
Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Inclusive fitness theory and eusociality
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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2011 | Journal Article | IST-REx-ID: 3375 | OA
The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Natural images from the birthplace of the human eye
G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
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2011 | Journal Article | IST-REx-ID: 3390 | OA
The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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2011 | Journal Article | IST-REx-ID: 3399 | OA View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3405 | OA
Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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2011 | Thesis | IST-REx-ID: 3275 | OA
The role of chemotactic gradients in dendritic cell migration
K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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2011 | Conference Paper | IST-REx-ID: 9648 | OA
Incremental-decremental algorithm for computing AT-models and persistent homology
R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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2010 | Technical Report | IST-REx-ID: 5388 | OA
Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5389 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5390 | OA
Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5391 | OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
View | Files available | arXiv
 

2010 | Journal Article | IST-REx-ID: 3772 | OA
Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010).
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2010 | Journal Article | IST-REx-ID: 3773 | OA
What role does natural selection play in speciation?
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3776 | OA
Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
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2010 | Journal Article | IST-REx-ID: 3777 | OA
Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
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2010 | Journal Article | IST-REx-ID: 3787 | OA
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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2010 | Journal Article | IST-REx-ID: 3790 | OA
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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2010 | Conference Paper | IST-REx-ID: 3793 | OA
On parameter learning in CRF-based approaches to object class image segmentation
S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
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2010 | Book Chapter | IST-REx-ID: 3795 | OA
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Journal Article | IST-REx-ID: 3832 | OA
Beyond TARPs: The growing list of auxiliary AMPAR subunits
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
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2010 | Journal Article | IST-REx-ID: 3834 | OA
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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2010 | Conference Paper | IST-REx-ID: 3838 | OA
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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2010 | Journal Article | IST-REx-ID: 3842 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
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2010 | Conference Paper | IST-REx-ID: 3845 | OA
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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2010 | Conference Paper | IST-REx-ID: 3847 | OA
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3849 | OA
Persistent homology under non-uniform error
P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 | OA
Energy parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2010 | Conference Paper | IST-REx-ID: 3852 | OA
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
View | Files available | DOI | arXiv
 

2010 | Conference Paper | IST-REx-ID: 3853 | OA
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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2010 | Conference Paper | IST-REx-ID: 3855 | OA
Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
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2010 | Conference Paper | IST-REx-ID: 3856 | OA
Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
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2010 | Conference Paper | IST-REx-ID: 3858 | OA
The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3860 | OA
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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2010 | Journal Article | IST-REx-ID: 3861 | OA
Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
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2010 | Journal Article | IST-REx-ID: 3863 | OA
Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
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2010 | Conference Paper | IST-REx-ID: 3864 | OA
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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2010 | Conference Paper | IST-REx-ID: 3866 | OA
Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
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2010 | Journal Article | IST-REx-ID: 3868 | OA
Algorithms for game metrics
K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
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2010 | Journal Article | IST-REx-ID: 3901 | OA
Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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2010 | Journal Article | IST-REx-ID: 4157 | OA
Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
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2010 | Journal Article | IST-REx-ID: 4243 | OA
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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2010 | Book Chapter | IST-REx-ID: 4339 | OA
Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch
J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
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2010 | Book | IST-REx-ID: 4346 | OA
Handbuch Bibliothek 2.0
P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
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2010 | Conference Paper | IST-REx-ID: 4369 | OA
From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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2010 | Conference Paper | IST-REx-ID: 4378 | OA
Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
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2010 | Conference Paper | IST-REx-ID: 4380 | OA
A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
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2010 | Conference Paper | IST-REx-ID: 4381 | OA
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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2010 | Conference Paper | IST-REx-ID: 4382 | OA
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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2010 | Conference Paper | IST-REx-ID: 4388 | OA
GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
View | Files available | DOI | arXiv
 

2010 | Conference Paper | IST-REx-ID: 4389 | OA
Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
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2010 | Conference Paper | IST-REx-ID: 4390 | OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4393 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4396 | OA
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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2010 | Journal Article | IST-REx-ID: 3303 | OA
The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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2010 | Conference Paper | IST-REx-ID: 4361 | OA
Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Cryptic variation between species and the basis of hybrid performance
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5392 | OA
Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5393 | OA
Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5394 | OA
Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
View | Files available | DOI
 

2009 | Technical Report | IST-REx-ID: 5395 | OA
Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
View | Files available | DOI
 

2009 | Journal Article | IST-REx-ID: 3775 | OA
On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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2009 | Journal Article | IST-REx-ID: 3780 | OA View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3837 | OA
On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3841 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3843 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3844 | OA
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
View | Files available | DOI
 

2009 | Journal Article | IST-REx-ID: 3870 | OA
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3871 | OA
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3968 | OA
The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
View | Files available | DOI
 

2009 | Journal Article | IST-REx-ID: 4136 | OA
Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2009 | Journal Article | IST-REx-ID: 4242 | OA
The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
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2009 | Conference Paper | IST-REx-ID: 4542 | OA
Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
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2009 | Conference Paper | IST-REx-ID: 4545 | OA
A survey of stochastic games with limsup and liminf objectives
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 4569 | OA
Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
View | DOI | Download Preprint (ext.) | arXiv
 

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