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2525 Publications
2011 | Conference Paper | IST-REx-ID: 3360 |

Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
2011 | Conference Paper | IST-REx-ID: 3361 |

The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
2011 | Conference Paper | IST-REx-ID: 3362 |

Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
2011 | Preprint | IST-REx-ID: 3363 |

The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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| arXiv
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
2011 | Journal Article | IST-REx-ID: 3364 |

Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
2011 | Conference Paper | IST-REx-ID: 3365 |

QUASY: quantitative synthesis tool
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
2011 | Conference Paper | IST-REx-ID: 3366 |

Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
2011 | Journal Article | IST-REx-ID: 3368 |

Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
2011 | Journal Article | IST-REx-ID: 3370 |

Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3371 |

Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
2011 | Journal Article | IST-REx-ID: 3372 |

Inclusive fitness theory and eusociality
P. Abbot, J. Abe, J. Alcock, S. Alizon, J. Alpedrinha, M. Andersson, J. Andre, M. Van Baalen, F. Balloux, S. Balshine, N.H. Barton, L. Beukeboom, J. Biernaskie, T. Bilde, G. Borgia, M. Breed, S. Brown, R. Bshary, A. Buckling, N. Burley, M. Burton Chellew, M. Cant, M. Chapuisat, E. Charnov, T. Clutton Brock, A. Cockburn, B. Cole, N. Colegrave, L. Cosmides, I. Couzin, J. Coyne, S. Creel, B. Crespi, R. Curry, S. Dall, T. Day, J. Dickinson, L. Dugatkin, C. El Mouden, S. Emlen, J. Evans, R. Ferriere, J. Field, S. Foitzik, K. Foster, W. Foster, C. Fox, J. Gadau, S. Gandon, A. Gardner, M. Gardner, T. Getty, M. Goodisman, A. Grafen, R. Grosberg, C. Grozinger, P. Gouyon, D. Gwynne, P. Harvey, B. Hatchwell, J. Heinze, H. Helantera, K. Helms, K. Hill, N. Jiricny, R. Johnstone, A. Kacelnik, E.T. Kiers, H. Kokko, J. Komdeur, J. Korb, D. Kronauer, R. Kümmerli, L. Lehmann, T. Linksvayer, S. Lion, B. Lyon, J. Marshall, R. Mcelreath, Y. Michalakis, R. Michod, D. Mock, T. Monnin, R. Montgomerie, A. Moore, U. Mueller, R. Noë, S. Okasha, P. Pamilo, G. Parker, J. Pedersen, I. Pen, D. Pfennig, D. Queller, D. Rankin, S. Reece, H. Reeve, M. Reuter, G. Roberts, S. Robson, D. Roze, F. Rousset, O. Rueppell, J. Sachs, L. Santorelli, P. Schmid Hempel, M. Schwarz, T. Scott Phillips, J. Shellmann Sherman, P. Sherman, D. Shuker, J. Smith, J. Spagna, B. Strassmann, A. Suarez, L. Sundström, M. Taborsky, P. Taylor, G. Thompson, J. Tooby, N. Tsutsui, K. Tsuji, S. Turillazzi, F. Úbeda, E. Vargo, B. Voelkl, T. Wenseleers, S. West, M. West Eberhard, D. Westneat, D. Wiernasz, G. Wild, R. Wrangham, A. Young, D. Zeh, J. Zeh, A. Zink, Nature 471 (2011) E1–E4.
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P. Abbot, J. Abe, J. Alcock, S. Alizon, J. Alpedrinha, M. Andersson, J. Andre, M. Van Baalen, F. Balloux, S. Balshine, N.H. Barton, L. Beukeboom, J. Biernaskie, T. Bilde, G. Borgia, M. Breed, S. Brown, R. Bshary, A. Buckling, N. Burley, M. Burton Chellew, M. Cant, M. Chapuisat, E. Charnov, T. Clutton Brock, A. Cockburn, B. Cole, N. Colegrave, L. Cosmides, I. Couzin, J. Coyne, S. Creel, B. Crespi, R. Curry, S. Dall, T. Day, J. Dickinson, L. Dugatkin, C. El Mouden, S. Emlen, J. Evans, R. Ferriere, J. Field, S. Foitzik, K. Foster, W. Foster, C. Fox, J. Gadau, S. Gandon, A. Gardner, M. Gardner, T. Getty, M. Goodisman, A. Grafen, R. Grosberg, C. Grozinger, P. Gouyon, D. Gwynne, P. Harvey, B. Hatchwell, J. Heinze, H. Helantera, K. Helms, K. Hill, N. Jiricny, R. Johnstone, A. Kacelnik, E.T. Kiers, H. Kokko, J. Komdeur, J. Korb, D. Kronauer, R. Kümmerli, L. Lehmann, T. Linksvayer, S. Lion, B. Lyon, J. Marshall, R. Mcelreath, Y. Michalakis, R. Michod, D. Mock, T. Monnin, R. Montgomerie, A. Moore, U. Mueller, R. Noë, S. Okasha, P. Pamilo, G. Parker, J. Pedersen, I. Pen, D. Pfennig, D. Queller, D. Rankin, S. Reece, H. Reeve, M. Reuter, G. Roberts, S. Robson, D. Roze, F. Rousset, O. Rueppell, J. Sachs, L. Santorelli, P. Schmid Hempel, M. Schwarz, T. Scott Phillips, J. Shellmann Sherman, P. Sherman, D. Shuker, J. Smith, J. Spagna, B. Strassmann, A. Suarez, L. Sundström, M. Taborsky, P. Taylor, G. Thompson, J. Tooby, N. Tsutsui, K. Tsuji, S. Turillazzi, F. Úbeda, E. Vargo, B. Voelkl, T. Wenseleers, S. West, M. West Eberhard, D. Westneat, D. Wiernasz, G. Wild, R. Wrangham, A. Young, D. Zeh, J. Zeh, A. Zink, Nature 471 (2011) E1–E4.
2011 | Journal Article | IST-REx-ID: 3373 |

Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
2011 | Journal Article | IST-REx-ID: 3374 |

Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
2011 | Journal Article | IST-REx-ID: 3375 |

The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
2011 | Journal Article | IST-REx-ID: 3376 |

Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
2011 | Journal Article | IST-REx-ID: 3377 |

Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
2011 | Journal Article | IST-REx-ID: 3379 |

Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
2011 | Journal Article | IST-REx-ID: 3380 |

Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
2011 | Journal Article | IST-REx-ID: 3381 |

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
2011 | Journal Article | IST-REx-ID: 3384 |

Natural images from the birthplace of the human eye
G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
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G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3387 |

Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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A. Kupczok, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3388 |

Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
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L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3390 |

The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
2011 | Journal Article | IST-REx-ID: 3391 |

The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
2011 | Journal Article | IST-REx-ID: 3393 |

Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
2011 | Journal Article | IST-REx-ID: 3394 |

Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
2011 | Journal Article | IST-REx-ID: 3396 |

Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
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P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
2011 | Journal Article | IST-REx-ID: 3397 |

The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
2011 | Journal Article | IST-REx-ID: 3399 |

Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
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S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3405 |

Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
2011 | Journal Article | IST-REx-ID: 3505 |

In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
2011 | Thesis | IST-REx-ID: 3275 |

The role of chemotactic gradients in dendritic cell migration
K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, IST Austria, 2011.
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K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, IST Austria, 2011.
2010 | Journal Article | IST-REx-ID: 2409 |

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2010 | Conference Paper | IST-REx-ID: 488 |

Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
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R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
2010 | Conference Paper | IST-REx-ID: 489 |

How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
2010 | Technical Report | IST-REx-ID: 5388 |

Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
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K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5389 |

Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5390 |

Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
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K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
2010 | Technical Report | IST-REx-ID: 5391 |

Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
2010 | Conference Paper | IST-REx-ID: 3719 |

Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
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| arXiv
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
2010 | Journal Article | IST-REx-ID: 3772 |

Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010).
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N.H. Barton, PLoS Genetics 6 (2010).
2010 | Journal Article | IST-REx-ID: 3773 |

What role does natural selection play in speciation?
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
2010 | Journal Article | IST-REx-ID: 3776 |

Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
2010 | Journal Article | IST-REx-ID: 3777 |

Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
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N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
2010 | Journal Article | IST-REx-ID: 3779 |

Cryptic variation between species and the basis of hybrid performance
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
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U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
2010 | Journal Article | IST-REx-ID: 3787 |

DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
2010 | Journal Article | IST-REx-ID: 3790 |

Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
2010 | Conference Paper | IST-REx-ID: 3793 |

On parameter learning in CRF-based approaches to object class image segmentation
S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
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S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
2010 | Book Chapter | IST-REx-ID: 3795 |

The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
2010 | Journal Article | IST-REx-ID: 3832 |

Beyond TARPs: The growing list of auxiliary AMPAR subunits
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
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J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
2010 | Journal Article | IST-REx-ID: 3834 |

Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
2010 | Conference Paper | IST-REx-ID: 3838 |

Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
2010 | Conference Paper | IST-REx-ID: 3839 |

Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
2010 | Journal Article | IST-REx-ID: 3842 |

Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
2010 | Conference Paper | IST-REx-ID: 3845 |

Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
2010 | Conference Paper | IST-REx-ID: 3847 |

SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
2010 | Conference Paper | IST-REx-ID: 3849 |

Persistent homology under non-uniform error
P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
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P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
2010 | Conference Paper | IST-REx-ID: 3851 |

Energy parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
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| arXiv
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
2010 | Conference Paper | IST-REx-ID: 3852 |

Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
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| arXiv
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
2010 | Conference Paper | IST-REx-ID: 3853 |

Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
2010 | Conference Paper | IST-REx-ID: 3855 |

Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
2010 | Conference Paper | IST-REx-ID: 3856 |

Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
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K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
2010 | Conference Paper | IST-REx-ID: 3858 |

The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
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K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
2010 | Conference Paper | IST-REx-ID: 3860 |

Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
2010 | Journal Article | IST-REx-ID: 3861 |

Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
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K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
2010 | Journal Article | IST-REx-ID: 3863 |

Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
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D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
2010 | Conference Paper | IST-REx-ID: 3864 |

Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
2010 | Conference Paper | IST-REx-ID: 3866 |

Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
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R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
2010 | Journal Article | IST-REx-ID: 3867 |

Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
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K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
2010 | Journal Article | IST-REx-ID: 3868 |

Algorithms for game metrics
K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
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K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
2010 | Journal Article | IST-REx-ID: 3901 |

Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
2010 | Journal Article | IST-REx-ID: 4157 |

Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
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E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
2010 | Journal Article | IST-REx-ID: 4243 |

A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
2010 | Book Chapter | IST-REx-ID: 4339 |

Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch
J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
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J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
2010 | Book | IST-REx-ID: 4346 |

Handbuch Bibliothek 2.0
P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
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P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
2010 | Conference Paper | IST-REx-ID: 4369 |

From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
2010 | Conference Paper | IST-REx-ID: 4378 |

Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
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V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
2010 | Conference Paper | IST-REx-ID: 4380 |

A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
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T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
2010 | Conference Paper | IST-REx-ID: 4381 |

FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
2010 | Conference Paper | IST-REx-ID: 4382 |

Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
2010 | Conference Paper | IST-REx-ID: 4388 |

GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
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| arXiv
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
2010 | Conference Paper | IST-REx-ID: 4389 |

Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
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L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
2010 | Conference Paper | IST-REx-ID: 4390 |

Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
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P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
2010 | Conference Paper | IST-REx-ID: 4393 |

Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
2010 | Conference Paper | IST-REx-ID: 4396 |

Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
2010 | Journal Article | IST-REx-ID: 3303 |

The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
2010 | Conference Paper | IST-REx-ID: 4361 |

Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
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T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
2009 | Technical Report | IST-REx-ID: 5392 |

Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
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K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5393 |

Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5394 |

Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5395 |

Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
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K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
2009 | Journal Article | IST-REx-ID: 3775 |

On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
2009 | Journal Article | IST-REx-ID: 3780 |

The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails
A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
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A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
2009 | Conference Paper | IST-REx-ID: 3837 |

On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
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S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
2009 | Conference Paper | IST-REx-ID: 3841 |

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
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T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
2009 | Conference Paper | IST-REx-ID: 3843 |

Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
2009 | Conference Paper | IST-REx-ID: 3844 |

Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
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T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
2009 | Journal Article | IST-REx-ID: 3870 |

Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
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K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
2009 | Conference Paper | IST-REx-ID: 3871 |

Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
2009 | Conference Paper | IST-REx-ID: 3968 |

The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
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H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.