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43 Publications


2024 | Journal Article | IST-REx-ID: 14834 | OA
A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches
P. Radler, M. Loose, European Journal of Cell Biology 103 (2024).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15033 | OA
Developmental patterning function of GNOM ARF-GEF mediated from the cell periphery
M. Adamowski, I. Matijevic, J. Friml, ELife 13 (2024).
[Published Version] View | DOI | Download Published Version (ext.)
 

2024 | Journal Article | IST-REx-ID: 15257 | OA
Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism
I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024).
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12172
Experimental analysis of Cascade CSTRs with step and pulse inputs
B. Khatoon, S. Kamil, H. Babu, M. Siraj Alam, Materials Today: Proceedings 78 (2023) 40–47.
View | DOI
 

2023 | Journal Article | IST-REx-ID: 14274 | OA
CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration
J.H. Alanko, M.C. Ucar, N. Canigova, J.A. Stopp, J. Schwarz, J. Merrin, E.B. Hannezo, M.K. Sixt, Science Immunology 8 (2023).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14776 | OA
Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3
A. Teplova, A.A. Pigidanov, M.V. Serebryakova, S.A. Golyshev, R.A. Galiullina, N.V. Chichkova, A.B. Vartapetian, International Journal of Molecular Sciences 24 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14783 | OA
Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses
G.T. Cheung, O. Chever, A. Rollenhagen, N. Quenech’du, P. Ezan, J.H.R. Lübke, N. Rouach, Cells 12 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Conference Paper | IST-REx-ID: 14830
Learning control policies for stochastic systems with reach-avoid guarantees
D. Zikelic, M. Lechner, T.A. Henzinger, K. Chatterjee, in:, Proceedings of the 37th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2023, pp. 11926–11935.
[Preprint] View | Files available | DOI | arXiv
 

2023 | Journal Article | IST-REx-ID: 14835 | OA
Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten
L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R. Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Angewandte Chemie 135 (2023).
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 14854
Ubiquity of bound states for the strongly coupled polaron
D.J. Mitrouskas, R. Seiringer, Pure and Applied Analysis 5 (2023) 973–1008.
View | DOI
 

2022 | Journal Article | IST-REx-ID: 11713 | OA
Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12276 | OA
Optimal steering of matrix product states and quantum many-body scars
M. Ljubotina, B. Roos, D.A. Abanin, M. Serbyn, PRX Quantum 3 (2022).
[Published Version] View | Files available | DOI | arXiv
 

2022 | Journal Article | IST-REx-ID: 11448 | OA
Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12157 | OA
Polygenic adaptation after a sudden change in environment
L. Hayward, G. Sella, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12235 | OA
Haematological changes from conception to childbirth: An indicator of major pregnancy complications
M. Patxot, M. Stojanov, S.E. Ojavee, R.P. Gobert, Z. Kutalik, M. Gavillet, D. Baud, M.R. Robinson, European Journal of Haematology 109 (2022) 566–575.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12288 | OA
Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling
A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 13993 | OA
Attosecond photoionization dynamics: from molecules over clusters to the liquid phase
X. Gong, I. Jordan, M. Huppert, S. Heck, D.R. Baykusheva, D. Jelovina, A. Schild, H.J. Wörner, Chimia 76 (2022) 520–528.
[Published Version] View | DOI | Download Published Version (ext.)
 

2022 | Journal Article | IST-REx-ID: 12510 | OA
GoTube: Scalable statistical verification of continuous-depth models
S.A. Gruenbacher, M. Lechner, R. Hasani, D. Rus, T.A. Henzinger, S.A. Smolka, R. Grosu, Proceedings of the AAAI Conference on Artificial Intelligence 36 (2022) 6755–6764.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 12511 | OA
Stability verification in stochastic control systems via neural network supermartingales
M. Lechner, D. Zikelic, K. Chatterjee, T.A. Henzinger, Proceedings of the AAAI Conference on Artificial Intelligence 36 (2022) 7326–7336.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2022 | Journal Article | IST-REx-ID: 11471 | OA
Avoiding barren plateaus using classical shadows
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
[Published Version] View | Files available | DOI | WoS | arXiv
 

2021 | Journal Article | IST-REx-ID: 10806 | OA
Ligand conversion in nanocrystal synthesis: The oxidation of alkylamines to fatty acids by nitrate
M. Calcabrini, D. Van den Eynden, S. Sanchez Ribot, R. Pokratath, J. Llorca, J. De Roo, M. Ibáñez, JACS Au 1 (2021) 1898–1903.
[Published Version] View | Files available | DOI
 

2021 | Journal Article | IST-REx-ID: 9387 | OA
Two linked loci under mutation-selection balance and Muller’s ratchet
K. Khudiakova, T.Y. Neretina, A.S. Kondrashov, Journal of Theoretical Biology 524 (2021).
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 

2021 | Journal Article | IST-REx-ID: 10301 | OA
Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GIT1/mTORC1 assembly
M.J. Conde-Dusman, P.N. Dey, Ó. Elía-Zudaire, L.E. Garcia Rabaneda, C. García-Lira, T. Grand, V. Briz, E.R. Velasco, R. Andero Galí, S. Niñerola, A. Barco, P. Paoletti, J.F. Wesseling, F. Gardoni, S.J. Tavalin, I. Perez-Otaño, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 15278 | OA
Antibiotics treatment modulates microglia–synapses interaction
F. Cordella, C. Sanchini, M. Rosito, L. Ferrucci, N. Pediconi, B. Cortese, F. Guerrieri, G.R. Pascucci, F. Antonangeli, G. Peruzzi, M. Giubettini, B. Basilico, F. Pagani, A. Grimaldi, G. D’Alessandro, C. Limatola, D. Ragozzino, S. Di Angelantonio, Cells 10 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 15285 | OA
The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography
P. Rubel, J. Fayn, P.W. Macfarlane, D. Pani, A. Schlögl, A. Värri, Hearts 2 (2021) 384–409.
[Published Version] View | Files available | DOI
 

2021 | Journal Article | IST-REx-ID: 15273 | OA
Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse
T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 10816 | OA
How connectivity rules and synaptic properties shape the efficacy of pattern separation in the entorhinal cortex–dentate gyrus–CA3 network
J. Guzmán, A. Schlögl, C. Espinoza Martinez, X. Zhang, B. Suter, P.M. Jonas, Nature Computational Science 1 (2021) 830–842.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)
 

2021 | Journal Article | IST-REx-ID: 8931 | OA
Developmental roles of auxin binding protein 1 in Arabidopsis thaliana
Z. Gelová, M.C. Gallei, M. Pernisová, G. Brunoud, X. Zhang, M. Glanc, L. Li, J. Michalko, Z. Pavlovicova, I. Verstraeten, H. Han, J. Hajny, R. Hauschild, M. Čovanová, M. Zwiewka, L. Hörmayer, M. Fendrych, T. Xu, T. Vernoux, J. Friml, Plant Science 303 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 11055 | OA
Direct reprogramming of human smooth muscle and vascular endothelial cells reveals defects associated with aging and Hutchinson-Gilford progeria syndrome
S. Bersini, R. Schulte, L. Huang, H. Tsai, M. Hetzer, ELife 9 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 13361 | OA
Molecular photoswitching in confined spaces
A.B. Grommet, L.M. Lee, R. Klajn, Accounts of Chemical Research 53 (2020) 2600–2610.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 15055 | OA
Reinforcement learning of risk-constrained policies in Markov decision processes
T. Brázdil, K. Chatterjee, P. Novotný, J. Vahala, Proceedings of the 34th AAAI Conference on Artificial Intelligence 34 (2020) 9794–9801.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2020 | Journal Article | IST-REx-ID: 15063 | OA
Optimal lower bound on the least singular value of the shifted Ginibre ensemble
G. Cipolloni, L. Erdös, D.J. Schröder, Probability and Mathematical Physics 1 (2020) 101–146.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2020 | Journal Article | IST-REx-ID: 15153 | OA
Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing
J.L. Fribourgh, A. Srivastava, C.R. Sandate, A.K. Michael, P.L. Hsu, C. Rakers, L.T. Nguyen, M.R. Torgrimson, G.C.G. Parico, S. Tripathi, N. Zheng, G.C. Lander, T. Hirota, F. Tama, C.L. Partch, ELife 9 (2020).
[Published Version] View | DOI | Download Published Version (ext.)
 

2019 | Journal Article | IST-REx-ID: 12192 | OA
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2019 | Journal Article | IST-REx-ID: 11060 | OA
Selective clearance of the inner nuclear membrane protein emerin by vesicular transport during ER stress
A. Buchwalter, R. Schulte, H. Tsai, J. Capitanio, M. Hetzer, ELife 8 (2019).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2018 | Journal Article | IST-REx-ID: 8439
Solid state NMR studies of intact lipopolysaccharide endotoxin
C. Laguri, A. Silipo, A.M. Martorana, P. Schanda, R. Marchetti, A. Polissi, A. Molinaro, J.-P. Simorre, ACS Chemical Biology 13 (2018) 2106–2113.
View | DOI
 

2018 | Journal Article | IST-REx-ID: 10880 | OA
Significance of whole-genome duplications on the emergence of evolutionary novelties
M. Yuuta, K. Koshiba-Takeuchi, Briefings in Functional Genomics 17 (2018) 329–338.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2017 | Journal Article | IST-REx-ID: 10370 | OA
Mechanical force induces mitochondrial fission
S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Šarić, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2017 | Journal Article | IST-REx-ID: 15158 | OA
Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond
A.K. Michael, J.L. Fribourgh, R.N. Van Gelder, C.L. Partch, Photochemistry and Photobiology 93 (2017) 128–140.
[Published Version] View | DOI | Download Published Version (ext.)
 

2017 | Journal Article | IST-REx-ID: 15154 | OA
Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
J.C. Fong, A. Rogers, A.K. Michael, N.C. Parsley, W.-C. Cornell, Y.-C. Lin, P.K. Singh, R. Hartmann, K. Drescher, E. Vinogradov, L.E. Dietrich, C.L. Partch, F.H. Yildiz, ELife 6 (2017).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2015 | Journal Article | IST-REx-ID: 12196
The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity
K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015) 1616–1623.
View | DOI | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 10815 | OA
Molecular and cellular mechanisms of development underlying congenital diseases
M. Hashimoto, H. Morita, N. Ueno, Congenital Anomalies 54 (2014) 1–7.
View | DOI | Download None (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 10814
The excitation spectrum for Bose fluids with weak interactions
R. Seiringer, Jahresbericht Der Deutschen Mathematiker-Vereinigung 116 (2014) 21–41.
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