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4874 Publications


2024 | Journal Article | IST-REx-ID: 15122 | OA [Published Version] View | Files available | DOI | arXiv
 

2024 | Journal Article | IST-REx-ID: 15118
Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division
P. Nußbaum, D. Kureisaite-Ciziene, D. Bellini, C. Van Der Does, M. Kojic, N. Taib, A. Yeates, M. Tourte, S. Gribaldo, M. Loose, J. Löwe, S.V. Albers, Nature Microbiology 9 (2024) 698–711.
View | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15119 | OA
Stochastic maximal Lp(Lq)-regularity for second order systems with periodic boundary conditions
A. Agresti, M. Veraar, Annales de l’institut Henri Poincare Probability and Statistics 60 (2024) 413–430.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2024 | Journal Article | IST-REx-ID: 14478 | OA
Frequent horizontal chromosome transfer between asexual fungal insect pathogens
M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15116 | OA
Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration
G. Giubertoni, L. Feng, K. Klein, G. Giannetti, L. Rutten, Y. Choi, A. Van Der Net, G. Castro-Linares, F. Caporaletti, D. Micha, J. Hunger, A. Deblais, D. Bonn, N. Sommerdijk, A. Šarić, I.M. Ilie, G.H. Koenderink, S. Woutersen, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 10045 | OA
Generalized minimum 0-extension problem and discrete convexity
M. Dvorak, V. Kolmogorov, Mathematical Programming (2024).
[Preprint] View | Files available | DOI | arXiv
 

2024 | Journal Article | IST-REx-ID: 15121 | OA
Multiplicative auction algorithm for approximate maximum weight bipartite matching
D.W. Zheng, M.H. Henzinger, Mathematical Programming (2024).
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2024 | Journal Article | IST-REx-ID: 15114 View | DOI
 

2023 | Book Chapter | IST-REx-ID: 12428 | OA
A Guide Toward Multi-scale and Quantitative Branching Analysis in the Mammary Gland
E.B. Hannezo, C.L.G.J. Scheele, in:, C. Margadant (Ed.), Cell Migration in Three Dimensions, Springer Nature, 2023, pp. 183–205.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12534 | OA
Dissipative dynamics of an impurity with spin-orbit coupling
A. Ghazaryan, A. Cappellaro, M. Lemeshko, A. Volosniev, Physical Review Research 5 (2023).
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12158 | OA
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
P. Zeller, J. Yeung, H. Viñas Gaza, B.A. de Barbanson, V. Bhardwaj, M. Florescu, R. van der Linden, A. van Oudenaarden, Nature Genetics 55 (2023) 333–345.
[Published Version] View | Files available | DOI
 

2023 | Conference Paper | IST-REx-ID: 12676 | OA
Faster algorithm for turn-based stochastic games with bounded treewidth
K. Chatterjee, T. Meggendorfer, R.J. Saona Urmeneta, J. Svoboda, in:, Proceedings of the 2023 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2023, pp. 4590–4605.
[Published Version] View | DOI | Download Published Version (ext.)
 

2023 | Book Chapter | IST-REx-ID: 12720
Molecular Cloning Using In Vivo DNA Assembly
S. Arroyo-Urea, J. Watson, J. García-Nafría, in:, G. Scarlett (Ed.), DNA Manipulation and Analysis, Springer Nature, New York, NY, United States, 2023, pp. 33–44.
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2023 | Conference Paper | IST-REx-ID: 12735 | OA
Fast and scalable channels in Kotlin Coroutines
N. Koval, D.-A. Alistarh, R. Elizarov, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2023, pp. 107–118.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Poster | IST-REx-ID: 12736 | OA
Unexpected scaling in path copying trees
V. Aksenov, T.A. Brown, A. Fedorov, I. Kokorin, Unexpected Scaling in Path Copying Trees, Association for Computing Machinery, 2023.
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2023 | Conference Paper | IST-REx-ID: 12760 | OA
Dynamic maintenance of monotone dynamic programs and applications
M.H. Henzinger, S. Neumann, H. Räcke, S. Schmid, in:, 40th International Symposium on Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Thesis | IST-REx-ID: 12716 | OA
To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism
L. Burnett, To Flee, or Not to Flee? Using Innate Defensive Behaviours to Investigate Rapid Perceptual Decision-Making through Subcortical Circuits in Mouse Models of Autism, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Conference Paper | IST-REx-ID: 12854 | OA
Bubaak: Runtime monitoring of program verifiers
M. Chalupa, T.A. Henzinger, in:, Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2023, pp. 535–540.
[Published Version] View | Files available | DOI
 

2023 | Preprint | IST-REx-ID: 12846 | OA
Area formula for spherical polygons via prequantization
A. Chern, S. Ishida, ArXiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Paper | IST-REx-ID: 12856 | OA
Vamos: Middleware for best-effort third-party monitoring
M. Chalupa, F. Mühlböck, S. Muroya Lei, T.A. Henzinger, in:, Fundamental Approaches to Software Engineering, Springer Nature, 2023, pp. 260–281.
[Published Version] View | Files available | DOI
 

2023 | Technical Report | IST-REx-ID: 12407 | OA
VAMOS: Middleware for Best-Effort Third-Party Monitoring
M. Chalupa, F. Mühlböck, S. Muroya Lei, T.A. Henzinger, VAMOS: Middleware for Best-Effort Third-Party Monitoring, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Book Chapter | IST-REx-ID: 12866
Altered childhood brain development in autism and epilepsy
C. Currin, C. Beyer, in:, B. Halpern-Felsher (Ed.), Encyclopedia of Child and Adolescent Health, 1st ed., Elsevier, 2023, pp. 86–98.
View | DOI
 

2023 | Thesis | IST-REx-ID: 12809
Plasticity in the cerebellum: What molecular mechanisms are behind physiological learning
C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are behind Physiological Learning, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Conference Paper | IST-REx-ID: 13048 | OA
Hausdorff and Gromov-Hausdorff stable subsets of the medial axis
A. Lieutier, M. Wintraecken, in:, Proceedings of the 55th Annual ACM Symposium on Theory of Computing, Association for Computing Machinery, 2023, pp. 1768–1776.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Paper | IST-REx-ID: 13053 | OA
CrAM: A Compression-Aware Minimizer
E.-A. Peste, A. Vladu, E. Kurtic, C. Lampert, D.-A. Alistarh, in:, 11th International Conference on Learning Representations , n.d.
[Preprint] View | Files available | Download Preprint (ext.) | arXiv
 

2023 | Conference Paper | IST-REx-ID: 13143 | OA
Certifying giant nonprimes
C. Hoffmann, P. Hubáček, C. Kamath, K.Z. Pietrzak, in:, Public-Key Cryptography - PKC 2023, Springer Nature, 2023, pp. 530–553.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 

2023 | Conference Paper | IST-REx-ID: 13142 | OA
A learner-verifier framework for neural network controllers and certificates of stochastic systems
K. Chatterjee, T.A. Henzinger, M. Lechner, D. Zikelic, in:, Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2023, pp. 3–25.
[Published Version] View | Files available | DOI
 

2023 | Conference Paper | IST-REx-ID: 13141 | OA
Computing adequately permissive assumptions for synthesis
A. Anand, K. Mallik, S.P. Nayak, A.K. Schmuck, in:, TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2023, pp. 211–228.
[Published Version] View | Files available | DOI
 

2023 | Thesis | IST-REx-ID: 12826 | OA
Neural control of optic flow-based navigation in Drosophila melanogaster
V. Pokusaeva, Neural Control of Optic Flow-Based Navigation in Drosophila Melanogaster, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12086 | OA
A simple algorithm for higher-order Delaunay mosaics and alpha shapes
H. Edelsbrunner, G.F. Osang, Algorithmica 85 (2023) 277–295.
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12104 | OA
Ergodic decompositions of Dirichlet forms under order isomorphisms
L. Dello Schiavo, M. Wirth, Journal of Evolution Equations 23 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 11434 View | Files available | DOI | WoS
 

2023 | Conference Paper | IST-REx-ID: 12467 | OA
Quantitative safety and liveness
T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 26th International Conference Foundations of Software Science and Computation Structures, Springer Nature, 2023, pp. 349–370.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Journal Article | IST-REx-ID: 13179 | OA
CQS: A formally-verified framework for fair and abortable synchronization
N. Koval, D. Khalanskiy, D.-A. Alistarh, Proceedings of the ACM on Programming Languages 7 (2023).
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 13180 | OA
Local solubility for a family of quadrics over a split quadric surface
T.D. Browning, J. Lyczak, R. Sarapin, Involve 16 (2023) 331–342.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2023 | Conference Abstract | IST-REx-ID: 13162 | OA
Cryo-EM software packages: A sys-admins point of view
S. Elefante, S. Stadlbauer, M.F. Alexander, A. Schlögl, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, n.d., pp. 42–42.
[Submitted Version] View | Files available
 

2023 | Conference Abstract | IST-REx-ID: 13161 | OA
Running Windows-applications on a Linux HPC cluster using WINE
A. Schlögl, S. Elefante, V.-V. Hodirnau, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, n.d., pp. 59–59.
[Submitted Version] View | Files available
 

2023 | Journal Article | IST-REx-ID: 13251 | OA
Bond polarizability as a probe of local crystal fields in hybrid lead-halide perovskites
Y. Wei, A. Volosniev, D. Lorenc, A.A. Zhumekenov, O.M. Bakr, M. Lemeshko, Z. Alpichshev, The Journal of Physical Chemistry Letters 14 (2023) 6309–6314.
[Published Version] View | Files available | DOI | WoS | arXiv
 

2023 | Conference Paper | IST-REx-ID: 13292 | OA
Regular methods for operator precedence languages
T.A. Henzinger, P. Kebis, N.A. Mazzocchi, N.E. Sarac, in:, 50th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, p. 129:1--129:20.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Journal Article | IST-REx-ID: 13277 | OA
Stochastic representation of the quantum quartic oscillator
G. Tucci, S. De Nicola, S. Wald, A. Gambassi, SciPost Physics Core 6 (2023).
[Published Version] View | Files available | DOI | arXiv
 

2023 | Journal Article | IST-REx-ID: 13276 | OA
A modular implementation of an effective interaction approach for harmonically trapped fermions in 1D
L. Rammelmüller, D. Huber, A. Volosniev, SciPost Physics Codebases (2023).
[Published Version] View | Files available | DOI | arXiv
 

2023 | Research Data Reference | IST-REx-ID: 13275 | OA
Codebase release 1.0 for FermiFCI
L. Rammelmüller, D. Huber, A. Volosniev, (2023).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2023 | Conference Paper | IST-REx-ID: 13262 | OA
Provably-efficient and internally-deterministic parallel Union-Find
A. Fedorov, D. Hashemi, G. Nadiradze, D.-A. Alistarh, in:, Proceedings of the 35th ACM Symposium on Parallelism in Algorithms and Architectures, Association for Computing Machinery, 2023, pp. 261–271.
[Published Version] View | Files available | DOI | arXiv
 

2023 | Journal Article | IST-REx-ID: 11479 | OA
Ten years of demographic modelling of divergence and speciation in the sea
A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12329 | OA
New approaches to epidemic modeling on networks
A. Gómez, G. Oliveira, Scientific Reports 13 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 9034 | OA
Integral points of bounded height on a log Fano threefold
F.A. Wilsch, International Mathematics Research Notices 2023 (2023) 6780–6808.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2023 | Journal Article | IST-REx-ID: 12469 | OA
Antiviral immune response reveals host-specific virus infections in natural ant populations
L. Viljakainen, M. Fürst, A.V. Grasse, J. Jurvansuu, J. Oh, L. Tolonen, T. Eder, T. Rattei, S. Cremer, Frontiers in Microbiology 14 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12287 | OA
Local criteria for triangulating general manifolds
J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete & Computational Geometry 69 (2023) 156–191.
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12165
Directed percolation and the transition to turbulence
B. Hof, Nature Reviews Physics 5 (2023) 62–72.
View | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 12421 | OA
Deciphering the molecular mechanisms of actin cytoskeleton regulation in cell migration using cryo-EM
F. Fäßler, M. Javoor, F.K. Schur, Biochemical Society Transactions 51 (2023) 87–99.
[Published Version] View | Files available | DOI | WoS
 

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