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3937 Publications
2012 | Journal Article | IST-REx-ID: 3160
Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo
P. Pantazis, M.T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
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| DOI
P. Pantazis, M.T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
2012 | Journal Article | IST-REx-ID: 3161 |

Suppression of ribosomal function triggers innate immune signaling through activation of the NLRP3 inflammasome
M. Vyleta, J. Wong, B. Magun, PLoS One 7 (2012).
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M. Vyleta, J. Wong, B. Magun, PLoS One 7 (2012).
2012 | Conference Paper | IST-REx-ID: 3162 |

Parametric identification of temporal properties
E. Asarin, A. Donzé, O. Maler, D. Nickovic, in:, Springer, 2012, pp. 147–160.
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E. Asarin, A. Donzé, O. Maler, D. Nickovic, in:, Springer, 2012, pp. 147–160.
2012 | Journal Article | IST-REx-ID: 3164
Guest editorial: Special issue on structured prediction and inference
M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
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| DOI
M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
2012 | Journal Article | IST-REx-ID: 3166 |

Amino acid fermentation at the origin of the genetic code
H. de Vladar, Biology Direct 7 (2012).
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| DOI
H. de Vladar, Biology Direct 7 (2012).
2012 | Journal Article | IST-REx-ID: 3167
NextGen speaks 13
M. Weber, Science 336 (2012) 32–34.
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| DOI
| PubMed | Europe PMC
M. Weber, Science 336 (2012) 32–34.
2012 | Journal Article | IST-REx-ID: 3168
Lumpability abstractions of rule based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, Theoretical Computer Science 431 (2012) 137–164.
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J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, Theoretical Computer Science 431 (2012) 137–164.
2012 | Journal Article | IST-REx-ID: 3242 |

Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, S. Tragust, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, PLoS Biology 10 (2012).
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M. Konrad, M. Vyleta, F. Theis, M. Stock, S. Tragust, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, PLoS Biology 10 (2012).
2012 | Journal Article | IST-REx-ID: 3243
Zwischen Technologie und Information
P. Danowski, Büchereiperspektiven 1/2012 (2012) 11.
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P. Danowski, Büchereiperspektiven 1/2012 (2012) 11.
2012 | Journal Article | IST-REx-ID: 3244
Die Zeit des Abwartens ist vorbei!
P. Danowski, BuB – Forum Bibliothek und Information 64 (2012) 284.
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P. Danowski, BuB – Forum Bibliothek und Information 64 (2012) 284.
2012 | Journal Article | IST-REx-ID: 3245
Spurred by resistance mechanosensation in collective migration
M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 22 (2012) 3–4.
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| DOI
M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 22 (2012) 3–4.
2012 | Journal Article | IST-REx-ID: 3246
Cell adhesion in embryo morphogenesis
V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
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V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
2012 | Journal Article | IST-REx-ID: 3247
Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus)
S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
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| DOI
S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
2012 | Journal Article | IST-REx-ID: 3249
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 413 (2012) 21–35.
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| DOI
P. Cerny, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 413 (2012) 21–35.
2012 | Conference Paper | IST-REx-ID: 3250
Cryptography from learning parity with noise
K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
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| DOI
K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
2012 | Conference Paper | IST-REx-ID: 3251 |

Ideal abstractions for well structured transition systems
D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
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D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
2012 | Conference Paper | IST-REx-ID: 3252 |

Synthesizing protocols for digital contract signing
K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
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K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
2012 | Conference Paper | IST-REx-ID: 3253
Abstract domains for automated reasoning about list manipulating programs with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
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| DOI
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
2012 | Journal Article | IST-REx-ID: 3254
The complexity of stochastic Müller games
K. Chatterjee, Information and Computation 211 (2012) 29–48.
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K. Chatterjee, Information and Computation 211 (2012) 29–48.
2012 | Conference Paper | IST-REx-ID: 3255 |

Games and Markov decision processes with mean payoff parity and energy parity objectives
K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
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K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
2012 | Journal Article | IST-REx-ID: 3256 |

Dual complexes of cubical subdivisions of ℝn
H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
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H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
2012 | Journal Article | IST-REx-ID: 3257 |

Generalized roof duality and bisubmodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
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| arXiv
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
2012 | Journal Article | IST-REx-ID: 3258 |

Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons
S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
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| PubMed | Europe PMC
S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
2012 | Journal Article | IST-REx-ID: 3260 |

Evolutionary dynamics of biological auctions
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
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| PubMed | Europe PMC
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
2012 | Journal Article | IST-REx-ID: 3262 |

Optimizing information flow in small genetic networks. III. A self-interacting gene
G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
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G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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| DOI
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
2012 | Journal Article | IST-REx-ID: 3274
A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
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| DOI
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
2012 | Book Chapter | IST-REx-ID: 3277
Can the evolution of multicellularity be anticipated in the exploration of the solar system?
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
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| DOI
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
2012 | Conference Paper | IST-REx-ID: 3279
Hardness preserving constructions of pseudorandom functions
A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
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A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
2012 | Conference Paper | IST-REx-ID: 3280 |

Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
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K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
2012 | Conference Paper | IST-REx-ID: 3281
Lossy functions do not amplify well
K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
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K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
2012 | Conference Paper | IST-REx-ID: 3282 |

Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
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Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
2012 | Journal Article | IST-REx-ID: 3289 |

A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
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| Download Submitted Version (ext.)
| PubMed | Europe PMC
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
2012 | Journal Article | IST-REx-ID: 3310 |

A point calculus for interlevel set homology
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
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P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
2012 | Journal Article | IST-REx-ID: 3314
Discounting and averaging in games across time scales
K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer Science 23 (2012) 609–625.
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| DOI
K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer Science 23 (2012) 609–625.
2012 | Journal Article | IST-REx-ID: 3317 |

Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
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E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
2012 | Journal Article | IST-REx-ID: 3331 |

A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
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M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
2012 | Conference Paper | IST-REx-ID: 3341 |

Robustness of structurally equivalent concurrent parity games
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
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| Download Preprint (ext.)
| arXiv
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
2012 | Journal Article | IST-REx-ID: 492 |

GiA Roots: Software for the high throughput analysis of plant root system architecture
T. Galkovskyi, Y. Mileyko, A. Bucksch, B. Moore, O. Symonova, C. Price, C. Topp, A. Iyer Pascuzzi, P. Zurek, S. Fang, J. Harer, P. Benfey, J. Weitz, BMC Plant Biology 12 (2012).
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T. Galkovskyi, Y. Mileyko, A. Bucksch, B. Moore, O. Symonova, C. Price, C. Topp, A. Iyer Pascuzzi, P. Zurek, S. Fang, J. Harer, P. Benfey, J. Weitz, BMC Plant Biology 12 (2012).
2012 | Journal Article | IST-REx-ID: 493 |

Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
2012 | Journal Article | IST-REx-ID: 494
Translating to Co-Büchi made tight, unified, and useful
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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| DOI
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
2012 | Conference Paper | IST-REx-ID: 495 |

A Myhill Nerode theorem for automata with advice
A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
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A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
2012 | Conference Paper | IST-REx-ID: 496 |

Interpretations in trees with countably many branches
A. Rabinovich, S. Rubin, in:, IEEE, 2012.
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A. Rabinovich, S. Rubin, in:, IEEE, 2012.
2012 | Conference Paper | IST-REx-ID: 497 |

Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
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K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
2012 | Journal Article | IST-REx-ID: 498 |

Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
2012 | Journal Article | IST-REx-ID: 506 |

Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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| DOI
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
2012 | Technical Report | IST-REx-ID: 5377 |

Mean-payoff pushdown games
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
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| DOI
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
2012 | Technical Report | IST-REx-ID: 5378 |

Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
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| DOI
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
2012 | Technical Report | IST-REx-ID: 5396 |

Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
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| DOI
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
2012 | Report | IST-REx-ID: 5398 |

Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.