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3028 Publications


2013 | Journal Article | IST-REx-ID: 507 | OA
Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis
S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
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2013 | Journal Article | IST-REx-ID: 508 | OA
Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
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2013 | Journal Article | IST-REx-ID: 509 | OA
The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
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2013 | Journal Article | IST-REx-ID: 516 | OA
A map of cell type‐specific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
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2013 | Journal Article | IST-REx-ID: 499
Dynamic persistence of antibiotic-stressed mycobacteria
Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler, J. Mckinney, Science 339 (2013) 91–95.
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2013 | Journal Article | IST-REx-ID: 511 | OA
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
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2013 | Journal Article | IST-REx-ID: 527
Modeling framework for the establishment of the apical-basal embryonic axis in plants
K.T. Wabnik, H. Robert, R. Smith, J. Friml, Current Biology 23 (2013) 2513–2518.
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2013 | Journal Article | IST-REx-ID: 528
Local auxin sources orient the apical basal axis in arabidopsis embryos
H. Robert, P. Grones, A. Stepanova, L. Robles, A. Lokerse, J. Alonso, D. Weijers, J. Friml, Current Biology 23 (2013) 2506–2512.
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2013 | Journal Article | IST-REx-ID: 522
Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells
E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer, G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters 154 (2013) 31–41.
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2013 | Conference Paper | IST-REx-ID: 2279 | OA
Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, 8172 (2013) 118–132.
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2013 | Conference Paper | IST-REx-ID: 2000 | OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Technical Report | IST-REx-ID: 5399 | OA
TTP: Tool for Tumor Progression
J. Reiter, I. Bozic, K. Chatterjee, M. Nowak, TTP: Tool for Tumor Progression, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5400 | OA
What is decidable about partially observable Markov decision processes with ω-regular objectives
K. Chatterjee, M. Chmelik, M. Tracol, What Is Decidable about Partially Observable Markov Decision Processes with ω-Regular Objectives, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 5401 | OA
Initiatives and projects related to RD
J. Porsche, Initiatives and Projects Related to RD, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5402 | OA
How free is your linearizable concurrent data structure?
T.A. Henzinger, A. Sezgin, How Free Is Your Linearizable Concurrent Data Structure?, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2295 | OA View | Files available | DOI
 

2013 | Technical Report | IST-REx-ID: 5403 | OA
Qualitative analysis of concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5404 | OA
The complexity of ergodic games
K. Chatterjee, R. Ibsen-Jensen, The Complexity of Ergodic Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5410 | OA
Automatic generation of alternative starting positions for traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative Starting Positions for Traditional Board Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5409 | OA
Edit distance for timed automata
K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5406 | OA
Distributed synthesis for LTL Fragments
K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, Distributed Synthesis for LTL Fragments, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 5407 | OA
Technical requirements and features
J. Porsche, Technical Requirements and Features, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 1376
Distributed synthesis for LTL fragments
K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, in:, 13th International Conference on Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 18–25.
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2013 | Technical Report | IST-REx-ID: 5405 | OA
Perfect-information stochastic mean-payoff parity games
K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, Perfect-Information Stochastic Mean-Payoff Parity Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5408 | OA
The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2327 | OA
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
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2013 | Book Chapter | IST-REx-ID: 5747 | OA
Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates
C. Dragoi, A. Gupta, T.A. Henzinger, in:, Computer Aided Verification, Springer Berlin Heidelberg, Berlin, Heidelberg, 2013, pp. 174–190.
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2013 | Technical Report | IST-REx-ID: 6440 | OA
Replacing competition with cooperation to achieve scalable lock-free FIFO queues
T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2329 | OA
Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 8245 | OA
Trastuzumab mediates antibody-dependent cell-mediated cytotoxicity and phagocytosis to the same extent in both adjuvant and metastatic HER2/neu breast cancer patients
B. Petricevic, J. Laengle, J. Singer, M. Sachet, J. Singer, G. Steger, R. Bartsch, E. Jensen-Jarolim, M. Bergmann, Journal of Translational Medicine 11 (2013).
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2013 | Journal Article | IST-REx-ID: 8462
Oligomeric states along the folding pathways of β2-microglobulin: Kinetics, thermodynamics, and structure
E. Rennella, T. Cutuil, P. Schanda, I. Ayala, F. Gabel, V. Forge, A. Corazza, G. Esposito, B. Brutscher, Journal of Molecular Biology 425 (2013) 2722–2736.
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2013 | Journal Article | IST-REx-ID: 2926
Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, Current Biology 23 (2013) 76–82.
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2013 | Conference Paper | IST-REx-ID: 2820
Automated analysis of real-time scheduling using graph games
K. Chatterjee, A. Kößler, U. Schmid, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, ACM, 2013, pp. 163–172.
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2013 | Journal Article | IST-REx-ID: 827 | OA
Cytokinin cross talking during biotic and abiotic stress responses
J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
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2013 | Journal Article | IST-REx-ID: 828 | OA
Systems approaches to study root architecture dynamics
C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
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2012 | Conference Paper | IST-REx-ID: 1384 | OA
Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
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2012 | Conference Paper | IST-REx-ID: 2048 | OA
Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
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2012 | Conference Paper | IST-REx-ID: 2049 | OA
Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
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2012 | Journal Article | IST-REx-ID: 2263 | OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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2012 | Journal Article | IST-REx-ID: 2411 | OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
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2012 | Journal Article | IST-REx-ID: 2318 | OA
Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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2012 | Conference Paper | IST-REx-ID: 2715 | OA
Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
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2012 | Conference Paper | IST-REx-ID: 2825
Dynamic pruning of factor graphs for maximum marginal prediction
C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
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2012 | Journal Article | IST-REx-ID: 2848 | OA
Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.
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2012 | Journal Article | IST-REx-ID: 2849 | OA
On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
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2012 | Conference Paper | IST-REx-ID: 2888
Quantitative reactive models
T.A. Henzinger, in:, Conference Proceedings MODELS 2012, Springer, 2012, pp. 1–2.
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2012 | Conference Paper | IST-REx-ID: 2890
Synthesis from incompatible specifications
P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 53–62.
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2012 | Conference Paper | IST-REx-ID: 2891 | OA
Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.
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2012 | Journal Article | IST-REx-ID: 2902
Fractal and computational geometry for generalizing cartographic objects
H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.
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