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2973 Publications


2013 | Journal Article | IST-REx-ID: 2817 | OA
Novak, S., Chatterjee, K., & Nowak, M. (2013). Density games. Journal of Theoretical Biology, 334, 26–34. https://doi.org/10.1016/j.jtbi.2013.05.029
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2013 | Journal Article | IST-REx-ID: 2818 | OA
Rajan, K., Marre, O., & Tkacik, G. (2013). Learning quadratic receptive fields from neural responses to natural stimuli. Neural Computation, 25(7), 1661–1692. https://doi.org/10.1162/NECO_a_00463
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2013 | Conference Paper | IST-REx-ID: 2819 | OA
Chatterjee, K., & Prabhu, V. (2013). Quantitative timed simulation functions and refinement metrics for real-time systems. In Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control (Vol. 1, pp. 273–282). Philadelphia, PA USA: Springer. https://doi.org/10.1145/2461328.2461370
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2013 | Conference Paper | IST-REx-ID: 2820
Chatterjee, K., Kößler, A., & Schmid, U. (2013). Automated analysis of real-time scheduling using graph games. In Proceedings of the 16th International conference on Hybrid systems: Computation and control (pp. 163–172). Philadelphia, PA, United States: ACM. https://doi.org/10.1145/2461328.2461356
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2013 | Journal Article | IST-REx-ID: 2821 | OA
Remy, E., Cabrito, T., Baster, P., Batista, R., Teixeira, M., Friml, J., … Duque, P. (2013). A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell, 25(3), 901–926. https://doi.org/10.1105/tpc.113.110353
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2013 | Journal Article | IST-REx-ID: 2822 | OA
Topp, C., Iyer Pascuzzi, A., Anderson, J., Lee, C., Zurek, P., Symonova, O., … Benfey, P. (2013). 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. PNAS, 110(18), E1695–E1704. https://doi.org/10.1073/pnas.1304354110
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2013 | Journal Article | IST-REx-ID: 2823
Pickup, M., Wilson, S., Freudenberger, D., Nicholls, N., Gould, L., Hnatiuk, S., & Delandre, J. (2013). Post-fire recovery of revegetated woodland communities in south-eastern Australia. Austral Ecology, 38(3), 300–312. https://doi.org/10.1111/j.1442-9993.2012.02404.x
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2013 | Journal Article | IST-REx-ID: 2824
Chatterjee, K., & Prabhu, V. (2013). Synthesis of memory-efficient, clock-memory free, and non-Zeno safety controllers for timed systems. Information and Computation, 228229, 83–119. https://doi.org/10.1016/j.ic.2013.04.003
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2013 | Journal Article | IST-REx-ID: 2826 | OA
Tran Viet, K., Powell, C., Barathi, V., Klemm, T., Maurer Stroh, S., Limviphuvadh, V., … Young, T. (2013). Mutations in SCO2 are associated with autosomal-dominant high-grade myopia. American Journal of Human Genetics, 92(5), 820–826. https://doi.org/10.1016/j.ajhg.2013.04.005
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2013 | Journal Article | IST-REx-ID: 2827 | OA
Du, Y., Tejos, R., Beck, M., Himschoot, E., Li, H., Robatzek, S., … Friml, J. (2013). Salicylic acid interferes with clathrin-mediated endocytic protein trafficking. PNAS, 110(19), 7946–7951. https://doi.org/10.1073/pnas.1220205110
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2013 | Journal Article | IST-REx-ID: 2828 | OA
Kolmogorov, V., & Živný, S. (2013). The complexity of conservative valued CSPs. Journal of the ACM, 60(2). https://doi.org/10.1145/2450142.2450146
View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2829 | OA
Shi, L., Avila, M., & Hof, B. (2013). Scale invariance at the onset of turbulence in couette flow. Physical Review Letters, 110(20). https://doi.org/10.1103/PhysRevLett.110.204502
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2013 | Journal Article | IST-REx-ID: 2830
Moussion, C., & Sixt, M. K. (2013). A conduit to amplify innate immunity. Immunity, 38(5), 853–854. https://doi.org/10.1016/j.immuni.2013.05.005
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2013 | Journal Article | IST-REx-ID: 2831 | OA
Chatterjee, K., Henzinger, M., Joglekar, M., & Shah, N. (2013). Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. Formal Methods in System Design, 42(3), 301–327. https://doi.org/10.1007/s10703-012-0180-2
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2013 | Journal Article | IST-REx-ID: 2832 | OA
Tanaka, H., Kitakura, S., Rakusová, H., Uemura, T., Feraru, M., De Rycke, R., … Friml, J. (2013). Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana. PLoS Genetics, 9(5). https://doi.org/10.1371/journal.pgen.1003540
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2013 | Journal Article | IST-REx-ID: 2833
Heisenberg, C.-P. J., & Bellaïche, Y. (2013). Forces in tissue morphogenesis and patterning. Cell, 153(5), 948–962. https://doi.org/10.1016/j.cell.2013.05.008
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2013 | Journal Article | IST-REx-ID: 2834 | OA
Avila, M., Mellibovsky, F., Roland, N., & Hof, B. (2013). Streamwise-localized solutions at the onset of turbulence in pipe flow. Physical Review Letters, 110(22). https://doi.org/10.1103/PhysRevLett.110.224502
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2013 | Journal Article | IST-REx-ID: 2835 | OA
Yu, H., Karampelias, M., Robert, S., Peer, W., Swarup, R., Ye, S., … Estelle, M. (2013). Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis. Plant Physiology, 162(2), 965–976. https://doi.org/10.1104/pp.113.217018
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2013 | Journal Article | IST-REx-ID: 2836 | OA
Chatterjee, K., & Raman, V. (2013). Assume-guarantee synthesis for digital contract signing. Formal Aspects of Computing, 26(4), 825–859. https://doi.org/10.1007/s00165-013-0283-6
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2013 | Journal Article | IST-REx-ID: 2837 | OA
Erdös, L., Knowles, A., Yau, H., & Yin, J. (2013). The local semicircle law for a general class of random matrices. Electronic Journal of Probability, 18(59), 1–58. https://doi.org/10.1214/EJP.v18-2473
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2013 | Journal Article | IST-REx-ID: 2838 | OA
Arquè Fuste, G., Casanovas, A., & Dierssen, M. (2013). Dyrk1A is dynamically expressed on subsets of motor neurons and in the neuromuscular junction: Possible role in Down syndrome. PLoS One, 8(1). https://doi.org/10.1371/journal.pone.0054285
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2013 | Journal Article | IST-REx-ID: 2839 | OA
Weber, M., Hauschild, R., Schwarz, J., Moussion, C., De Vries, I., Legler, D., … Sixt, M. K. (2013). Interstitial dendritic cell guidance by haptotactic chemokine gradients. Science, 339(6117), 328–332. https://doi.org/10.1126/science.1228456
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2013 | Journal Article | IST-REx-ID: 2840
Van Cauter, T., Camon, J., Alvernhe, A., Elduayen, C., Sargolini, F., & Save, É. (2013). Distinct roles of medial and lateral entorhinal cortex in spatial cognition. Cerebral Cortex, 23(2), 451–459. https://doi.org/10.1093/cercor/bhs033
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2013 | Journal Article | IST-REx-ID: 2841
Morita, H., & Heisenberg, C.-P. J. (2013). Holding on and letting go: Cadherin turnover in cell intercalation. Developmental Cell, 24(6), 567–569. https://doi.org/10.1016/j.devcel.2013.03.007
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2013 | Journal Article | IST-REx-ID: 2842 | OA
Barton, N. H., Etheridge, A., Kelleher, J., & Véber, A. (2013). Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks. Theoretical Population Biology, 87(1), 105–119. https://doi.org/10.1016/j.tpb.2013.03.001
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2013 | Conference Paper | IST-REx-ID: 2843
Edelsbrunner, H., & Pausinger, F. (2013). Stable length estimates of tube-like shapes. In 17th IAPR International Conference on Discrete Geometry for Computer Imagery (Vol. 7749, pp. XV–XIX). Seville, Spain: Springer. https://doi.org/10.1007/978-3-642-37067-0
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2013 | Journal Article | IST-REx-ID: 2844
Rosquete, M., Von Wangenheim, D., Marhavy, P., Barbez, E., Stelzer, E., Benková, E., … Kleine Vehn, J. (2013). An auxin transport mechanism restricts positive orthogravitropism in lateral roots. Current Biology, 23(9), 817–822. https://doi.org/10.1016/j.cub.2013.03.064
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2013 | Journal Article | IST-REx-ID: 2845
Rose, T., Schönenberger, P., Jezek, K., & Oertner, T. (2013). Developmental refinement of vesicle cycling at Schaffer collateral synapses. Neuron, 77(6), 1109–1121. https://doi.org/10.1016/j.neuron.2013.01.021
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2013 | Journal Article | IST-REx-ID: 2846 | OA
El Masri, L., Schulte, R., Timmermeyer, N., Thanisch, S., Crummenerl, L., Jansen, G., … Schulenburg, H. (2013). Sex differences in host defence interfere with parasite-mediated selection for outcrossing during host-parasite coevolution. Ecology Letters, 16(4), 461–468. https://doi.org/10.1111/ele.12068
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2013 | Conference Paper | IST-REx-ID: 2847 | OA
Bansal, K., Koskinen, E., Wies, T., & Zufferey, D. (2013). Structural Counter Abstraction. (N. Piterman & S. Smolka, Eds.). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Rome, Italy: Springer. https://doi.org/10.1007/978-3-642-36742-7_5
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2013 | Journal Article | IST-REx-ID: 2850 | OA
Tkacik, G., Marre, O., Mora, T., Amodei, D., Berry, M., & Bialek, W. (2013). The simplest maximum entropy model for collective behavior in a neural network. Journal of Statistical Mechanics Theory and Experiment, 2013(3), P03011. https://doi.org/10.1088/1742-5468/2013/03/P03011
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2013 | Journal Article | IST-REx-ID: 2851
Berry, M., Tkacik, G., Dubuis, J., Marre, O., & Da Silveira, R. (2013). A simple method for estimating the entropy of neural activity. Journal of Statistical Mechanics Theory and Experiment, 2013(3). https://doi.org/10.1088/1742-5468/2013/03/P03015
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2013 | Journal Article | IST-REx-ID: 2853 | OA
Refardt, D., Bergmiller, T., & Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences, 280(1759). https://doi.org/10.1098/rspb.2012.3035
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2013 | Journal Article | IST-REx-ID: 2854 | OA
Chatterjee, K., De Alfaro, L., & Henzinger, T. A. (2013). Strategy improvement for concurrent reachability and turn based stochastic safety games. Journal of Computer and System Sciences, 79(5), 640–657. https://doi.org/10.1016/j.jcss.2012.12.001
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2013 | Journal Article | IST-REx-ID: 2855 | OA
Hippenmeyer, S., Johnson, R., & Luo, L. (2013). Mosaic analysis with double markers reveals cell type specific paternal growth dominance. Cell Reports, 3(3), 960–967. https://doi.org/10.1016/j.celrep.2013.02.002
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2013 | Journal Article | IST-REx-ID: 2856 | OA
Levitz, J., Pantoja, C., Gaub, B., Janovjak, H. L., Reiner, A., Hoagland, A., … Isacoff, E. (2013). Optical control of metabotropic glutamate receptors. Nature Neuroscience, 16, 507–516. https://doi.org/10.1038/nn.3346
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2013 | Journal Article | IST-REx-ID: 2857 | OA
Szobota, S., Mckenzie, C., & Janovjak, H. L. (2013). Optical control of ligand-gated ion channels. Methods in Molecular Biology, 998, 417–435. https://doi.org/10.1007/978-1-62703-351-0_32
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2013 | Journal Article | IST-REx-ID: 2858 | OA
Reiter, J., Božić, I., Allen, B., Chatterjee, K., & Nowak, M. (2013). The effect of one additional driver mutation on tumor progression. Evolutionary Applications, 6(1), 34–45. https://doi.org/10.1111/eva.12020
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2013 | Journal Article | IST-REx-ID: 2859 | OA
Bendich, P., Edelsbrunner, H., Morozov, D., & Patel, A. (2013). Homology and robustness of level and interlevel sets. Homology, Homotopy and Applications, 15(1), 51–72. https://doi.org/10.4310/HHA.2013.v15.n1.a3
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2013 | Journal Article | IST-REx-ID: 2860 | OA
Dupret, D., O’Neill, J., & Csicsvari, J. L. (2013). Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning. Neuron, 78(1), 166–180. https://doi.org/10.1016/j.neuron.2013.01.033
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2013 | Journal Article | IST-REx-ID: 2861
Botella Soler, V., Oteo, J., Ros, J., & Glendinning, P. (2013). Lyapunov exponent and topological entropy plateaus in piecewise linear maps. Journal of Physics A: Mathematical and Theoretical, 46(12). https://doi.org/10.1088/1751-8113/46/12/125101
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2013 | Journal Article | IST-REx-ID: 2862 | OA
Tay, H., Schulze, S., Compagnon, J., Foley, F., Heisenberg, C.-P. J., Yost, H. J., … Amack, J. (2013). Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle. Development, 140(7), 1550–1559. https://doi.org/10.1242/dev.087130
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2013 | Journal Article | IST-REx-ID: 2863 | OA
Granot Atedgi, E., Tkačik, G., Segev, R., & Schneidman, E. (2013). Stimulus-dependent maximum entropy models of neural population codes. PLoS Computational Biology, 9(3). https://doi.org/10.1371/journal.pcbi.1002922
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2013 | Journal Article | IST-REx-ID: 2880 | OA
Marhavy, P., Vanstraelen, M., De Rybel, B., Zhaojun, D., Bennett, M., Beeckman, T., & Benková, E. (2013). Auxin reflux between the endodermis and pericycle promotes lateral root initiation. EMBO Journal, 32(1), 149–158. https://doi.org/10.1038/emboj.2012.303
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2013 | Journal Article | IST-REx-ID: 2882 | OA
Löfke, C., Zwiewka, M., Heilmann, I., Van Montagu, M., Teichmann, T., & Friml, J. (2013). Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism. PNAS, 110(9), 3627–3632. https://doi.org/10.1073/pnas.1300107110
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2013 | Journal Article | IST-REx-ID: 2883 | OA
Wang, B., Bailly, A., Zwiewk, M., Henrichs, S., Azzarello, E., Mancuso, S., … Geisler, M. (2013). Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane. Plant Cell, 25(1), 202–214. https://doi.org/10.1105/tpc.112.105999
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2013 | Journal Article | IST-REx-ID: 2884
Maître, J.-L., Berthoumieux, H., Krens, G., Salbreux, G., Julicher, F., Paluch, E., & Heisenberg, C.-P. J. (2013). Cell adhesion mechanics of zebrafish gastrulation. Medecine Sciences, 29(2), 147–150. https://doi.org/10.1051/medsci/2013292011
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2013 | Conference (Editor) | IST-REx-ID: 2885
Kucera, A., Henzinger, T. A., Nesetril, J., Vojnar, T., & Antos, D. (Eds.). (2013). Mathematical and Engineering Methods in Computer Science (Vol. 7721, pp. 1–228). Presented at the MEMICS: Mathematical and Engineering methods in computer science, Znojmo, Czech Republic: Springer. https://doi.org/10.1007/978-3-642-36046-6
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2013 | Conference Paper | IST-REx-ID: 2886 | OA
Chmelik, M., & Řehák, V. (2013). Controllable-choice message sequence graphs. Presented at the MEMICS: Mathematical and Engineering Methods in Computer Science, Znojmo, Czech Republic: Springer. https://doi.org/10.1007/978-3-642-36046-6_12
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2013 | Journal Article | IST-REx-ID: 2887 | OA
Fang, S., Clark, R., Zheng, Y., Iyer Pascuzzi, A., Weitz, J., Kochian, L., … Benfey, P. (2013). Genotypic recognition and spatial responses by rice roots. PNAS, 110(7), 2670–2675. https://doi.org/10.1073/pnas.1222821110
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