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2928 Publications


2013 | Journal Article | IST-REx-ID: 2856 | OA
Levitz, Joshua, Carlos Pantoja, Benjamin Gaub, Harald L Janovjak, Andreas Reiner, Adam Hoagland, David Schoppik, et al. “Optical Control of Metabotropic Glutamate Receptors.” Nature Neuroscience 16 (2013): 507–16. https://doi.org/10.1038/nn.3346.
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2013 | Journal Article | IST-REx-ID: 2857 | OA
Szobota, Stephanie, Catherine Mckenzie, and Harald L Janovjak. “Optical Control of Ligand-Gated Ion Channels.” Methods in Molecular Biology 998 (2013): 417–35. https://doi.org/10.1007/978-1-62703-351-0_32.
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2013 | Journal Article | IST-REx-ID: 2858 | OA
Reiter, Johannes, Ivana Božić, Benjamin Allen, Krishnendu Chatterjee, and Martin Nowak. “The Effect of One Additional Driver Mutation on Tumor Progression.” Evolutionary Applications 6, no. 1 (2013): 34–45. https://doi.org/10.1111/eva.12020.
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2013 | Journal Article | IST-REx-ID: 2859 | OA
Bendich, Paul, Herbert Edelsbrunner, Dmitriy Morozov, and Amit Patel. “Homology and Robustness of Level and Interlevel Sets.” Homology, Homotopy and Applications 15, no. 1 (2013): 51–72. https://doi.org/10.4310/HHA.2013.v15.n1.a3.
View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2860 | OA
Dupret, David, Joseph O’Neill, and Jozsef L Csicsvari. “Dynamic Reconfiguration of Hippocampal Interneuron Circuits during Spatial Learning.” Neuron 78, no. 1 (2013): 166–80. https://doi.org/10.1016/j.neuron.2013.01.033.
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2013 | Journal Article | IST-REx-ID: 2861
Botella Soler, Vicente, José Oteo, Javier Ros, and Paul Glendinning. “Lyapunov Exponent and Topological Entropy Plateaus in Piecewise Linear Maps.” Journal of Physics A: Mathematical and Theoretical 46, no. 12 (2013). https://doi.org/10.1088/1751-8113/46/12/125101.
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2013 | Journal Article | IST-REx-ID: 2862 | OA
Tay, Hwee, Sabrina Schulze, Julien Compagnon, Fiona Foley, Carl-Philipp J Heisenberg, H Joseph Yost, Salim Abdelilah Seyfried, and Jeffrey Amack. “Lethal Giant Larvae 2 Regulates Development of the Ciliated Organ Kupffer’s Vesicle.” Development 140, no. 7 (2013): 1550–59. https://doi.org/10.1242/dev.087130.
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2013 | Journal Article | IST-REx-ID: 2863 | OA
Granot Atedgi, Einat, Gašper Tkačik, Ronen Segev, and Elad Schneidman. “Stimulus-Dependent Maximum Entropy Models of Neural Population Codes.” PLoS Computational Biology 9, no. 3 (2013). https://doi.org/10.1371/journal.pcbi.1002922.
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2013 | Journal Article | IST-REx-ID: 2880 | OA
Marhavy, Peter, Marleen Vanstraelen, Bert De Rybel, Ding Zhaojun, Malcolm Bennett, Tom Beeckman, and Eva Benková. “Auxin Reflux between the Endodermis and Pericycle Promotes Lateral Root Initiation.” EMBO Journal 32, no. 1 (2013): 149–58. https://doi.org/10.1038/emboj.2012.303.
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2013 | Journal Article | IST-REx-ID: 2882 | OA
Löfke, Christian, Marta Zwiewka, Ingo Heilmann, Marc Van Montagu, Thomas Teichmann, and Jirí Friml. “Asymmetric Gibberellin Signaling Regulates Vacuolar Trafficking of PIN Auxin Transporters during Root Gravitropism.” PNAS 110, no. 9 (2013): 3627–32. https://doi.org/10.1073/pnas.1300107110.
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2013 | Journal Article | IST-REx-ID: 2883 | OA
Wang, Bangjun, Aurélien Bailly, Marta Zwiewk, Sina Henrichs, Elisa Azzarello, Stefano Mancuso, Masayoshi Maeshima, Jirí Friml, Alexander Schulz, and Markus Geisler. “Arabidopsis TWISTED DWARF1 Functionally Interacts with Auxin Exporter ABCB1 on the Root Plasma Membrane.” Plant Cell 25, no. 1 (2013): 202–14. https://doi.org/10.1105/tpc.112.105999.
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2013 | Journal Article | IST-REx-ID: 2884
Maître, Jean-Léon, Hélène Berthoumieux, Gabriel Krens, Guillaume Salbreux, Frank Julicher, Ewa Paluch, and Carl-Philipp J Heisenberg. “Cell Adhesion Mechanics of Zebrafish Gastrulation.” Medecine Sciences 29, no. 2 (2013): 147–50. https://doi.org/10.1051/medsci/2013292011.
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2013 | Conference (Editor) | IST-REx-ID: 2885
Kucera, Antonin, Thomas A Henzinger, Jaroslav Nesetril, Tomas Vojnar, and David Antos, eds. Mathematical and Engineering Methods in Computer Science. Vol. 7721. Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-36046-6.
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2013 | Conference Paper | IST-REx-ID: 2886 | OA
Chmelik, Martin, and Vojtěch Řehák. “Controllable-Choice Message Sequence Graphs.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-36046-6_12.
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2013 | Journal Article | IST-REx-ID: 2887 | OA
Fang, Suqin, Randy Clark, Ying Zheng, Anjali Iyer Pascuzzi, Joshua Weitz, Leon Kochian, Herbert Edelsbrunner, Hong Liao, and Philip Benfey. “Genotypic Recognition and Spatial Responses by Rice Roots.” PNAS 110, no. 7 (2013): 2670–75. https://doi.org/10.1073/pnas.1222821110.
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2013 | Conference Paper | IST-REx-ID: 2901 | OA
Chen, Chao, Vladimir Kolmogorov, Zhu Yan, Dimitris Metaxas, and Christoph Lampert. “Computing the M Most Probable Modes of a Graphical Model,” 31:161–69. JMLR, 2013.
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2013 | Conference Paper | IST-REx-ID: 2906 | OA
Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes and Their Implementation.” In 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, 70–77. Society of Industrial and Applied Mathematics, 2013. https://doi.org/10.1137/1.9781611972931.6.
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2013 | Book Chapter | IST-REx-ID: 2907 | OA
Barton, Nicholas H. “Recombination and Sex.” In The Princeton Guide to Evolution, 328–33. Princeton University Press, 2013.
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2013 | Journal Article | IST-REx-ID: 2908 | OA
Barton, Nicholas H. “Does Hybridisation Influence Speciation?  .” Journal of Evolutionary Biology 26, no. 2 (2013): 267–69. https://doi.org/10.1111/jeb.12015.
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2013 | Journal Article | IST-REx-ID: 2909 | OA
Barton, Nicholas H, Alison Etheridge, and Amandine Véber. “Modelling Evolution in a Spatial Continuum.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 1 (2013). https://doi.org/10.1088/1742-5468/2013/01/P01002.
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2013 | Journal Article | IST-REx-ID: 2910 | OA
Kelleher, Jerome, Nicholas H Barton, and Alison Etheridge. “Coalescent Simulation in Continuous Space.” Bioinformatics 29, no. 7 (2013): 955–56. https://doi.org/10.1093/bioinformatics/btt067.
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2013 | Journal Article | IST-REx-ID: 2913 | OA
Tkacik, Gasper, Einat Granot Atedgi, Ronen Segev, and Elad Schneidman. “Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses.” Physical Review Letters 110, no. 5 (2013). https://doi.org/10.1103/PhysRevLett.110.058104.
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2013 | Journal Article | IST-REx-ID: 2914 | OA
Stephens, Greg, Thierry Mora, Gašper Tkačik, and William Bialek. “Statistical Thermodynamics of Natural Images.” Physical Review Letters 110, no. 1 (2013). https://doi.org/10.1103/PhysRevLett.110.018701.
View | Files available | DOI | Download Published Version (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2918
Castanon, Irinka, Laurence Abrami, Laurent Holtzer, Carl-Philipp J Heisenberg, Françoise Van Der Goot, and Marcos González Gaitán. “Anthrax Toxin Receptor 2a Controls Mitotic Spindle Positioning.” Nature Cell Biology 15, no. 1 (2013): 28–39. https://doi.org/10.1038/ncb2632.
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2013 | Journal Article | IST-REx-ID: 2919 | OA
Baster, Pawel, Stéphanie Robert, Jürgen Kleine Vehn, Steffen Vanneste, Urszula Kania, Wim Grunewald, Bert De Rybel, Tom Beeckman, and Jirí Friml. “SCF^TIR1 AFB-Auxin Signalling Regulates PIN Vacuolar Trafficking and Auxin Fluxes during Root Gravitropism.” EMBO Journal 32, no. 2 (2013): 260–74. https://doi.org/10.1038/emboj.2012.310.
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2013 | Journal Article | IST-REx-ID: 2920 | OA
Compagnon, Julien, and Carl-Philipp J Heisenberg. “Neurulation Coordinating Cell Polarisation and Lumen Formation.” EMBO Journal 32, no. 1 (2013): 1–3. https://doi.org/10.1038/emboj.2012.325.
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2013 | Journal Article | IST-REx-ID: 2926
Tragust, Simon, Barbara Mitteregger, Vanessa Barone, Matthias Konrad, Line V Ugelvig, and Sylvia Cremer. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison.” Current Biology 23, no. 1 (2013): 76–82. https://doi.org/10.1016/j.cub.2012.11.034.
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2013 | Journal Article | IST-REx-ID: 2939
Chen, Chao, and Michael Kerber. “An Output Sensitive Algorithm for Persistent Homology.” Computational Geometry: Theory and Applications 46, no. 4 (2013): 435–47. https://doi.org/10.1016/j.comgeo.2012.02.010.
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2013 | Conference Paper | IST-REx-ID: 2940 | OA
Krenn, Stephan, Krzysztof Z Pietrzak, and Akshay Wadia. “A Counterexample to the Chain Rule for Conditional HILL Entropy, and What Deniable Encryption Has to Do with It.” edited by Amit Sahai, 7785:23–39. Springer, 2013. https://doi.org/10.1007/978-3-642-36594-2_2.
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2013 | Journal Article | IST-REx-ID: 2944
Aeschbacher, Simon, Andreas Futschik, and Mark Beaumont. “Approximate Bayesian Computation for Modular Inference Problems with Many Parameters: The Example of Migration Rates. .” Molecular Ecology 22, no. 4 (2013): 987–1002. https://doi.org/10.1111/mec.12165.
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2013 | Conference Paper | IST-REx-ID: 2948 | OA
Tommasi, Tatiana, Novi Quadrianto, Barbara Caputo, and Christoph Lampert. “Beyond Dataset Bias: Multi-Task Unaligned Shared Knowledge Transfer.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-37331-2_1.
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2013 | Journal Article | IST-REx-ID: 3116
Chatterjee, Krishnendu, Luca De Alfaro, Marco Faella, Ritankar Majumdar, and Vishwanath Raman. “Code Aware Resource Management.” Formal Methods in System Design 42, no. 2 (2013): 142–74. https://doi.org/10.1007/s10703-012-0170-4.
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2013 | Technical Report | IST-REx-ID: 6440 | OA
Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues . IST Austria, 2013. https://doi.org/10.15479/AT:IST-2013-124-v1-1.
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2013 | Journal Article | IST-REx-ID: 8245 | OA
Petricevic, Branka, Johannes Laengle, Josef Singer, Monika Sachet, Judit Singer, Guenther Steger, Rupert Bartsch, Erika Jensen-Jarolim, and Michael Bergmann. “Trastuzumab Mediates Antibody-Dependent Cell-Mediated Cytotoxicity and Phagocytosis to the Same Extent in Both Adjuvant and Metastatic HER2/Neu Breast Cancer Patients.” Journal of Translational Medicine 11 (2013). https://doi.org/10.1186/1479-5876-11-307.
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2013 | Journal Article | IST-REx-ID: 827 | OA
O’Brien, José, and Eva Benková. “Cytokinin Cross Talking during Biotic and Abiotic Stress Responses.” Frontiers in Plant Science 4 (2013). https://doi.org/10.3389/fpls.2013.00451.
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2013 | Journal Article | IST-REx-ID: 828 | OA
Cuesta, Candela, Krzysztof T Wabnik, and Eva Benková. “Systems Approaches to Study Root Architecture Dynamics.” Frontiers in Plant Science 4 (2013). https://doi.org/10.3389/fpls.2013.00537.
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2013 | Conference Paper | IST-REx-ID: 1374 | OA
Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” In 22nd EACSL Annual Conference on Computer Science Logic, 23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.4230/LIPIcs.CSL.2013.181.
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2013 | Conference Paper | IST-REx-ID: 1376
Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis. “Distributed Synthesis for LTL Fragments.” In 13th International Conference on Formal Methods in Computer-Aided Design, 18–25. IEEE, 2013. https://doi.org/10.1109/FMCAD.2013.6679386.
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2013 | Conference Paper | IST-REx-ID: 1385 | OA
Hofferek, Georg, Ashutosh Gupta, Bettina Könighofer, Jie Jiang, and Roderick Bloem. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” In 2013 Formal Methods in Computer-Aided Design, 77–84. IEEE, 2013. https://doi.org/10.1109/FMCAD.2013.6679394.
View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Conference Paper | IST-REx-ID: 1387 | OA
Boker, Udi, Denis Kuperberg, Orna Kupferman, and Michał Skrzypczak. “Nondeterminism in the Presence of a Diverse or Unknown Future.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39212-2_11.
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2013 | Thesis | IST-REx-ID: 1405
Zufferey, Damien. Analysis of Dynamic Message Passing Programs. IST Austria, 2013.
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2013 | Thesis | IST-REx-ID: 1406
Campinho, Pedro. Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading. IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 3261 | OA
Dubuis, Julien, Gašper Tkačik, Eric Wieschaus, Thomas Gregor, and William Bialek. “Positional Information, in Bits.” PNAS 110, no. 41 (2013): 16301–8. https://doi.org/10.1073/pnas.1315642110.
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2013 | Encyclopedia Article | IST-REx-ID: 3321
Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” In Encyclopedia of Systems Biology, edited by Werner Dubitzky, Olaf Wolkenhauer, Kwang Cho, and Hiroki Yokota, 3:1069–1069. Springer, 2013. https://doi.org/10.1007/978-1-4419-9863-7_604.
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2013 | Journal Article | IST-REx-ID: 8462
Rennella, E., T. Cutuil, Paul Schanda, I. Ayala, F. Gabel, V. Forge, A. Corazza, G. Esposito, and B. Brutscher. “Oligomeric States along the Folding Pathways of Β2-Microglobulin: Kinetics, Thermodynamics, and Structure.” Journal of Molecular Biology 425, no. 15 (2013): 2722–36. https://doi.org/10.1016/j.jmb.2013.04.028.
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2012 | Conference Paper | IST-REx-ID: 2048 | OA
Faust, Sebastian, Krzysztof Z Pietrzak, and Joachim Schipper. “Practical Leakage-Resilient Symmetric Cryptography.” In Conference Proceedings CHES 2012, 7428:213–32. Springer, 2012. https://doi.org/10.1007/978-3-642-33027-8_13.
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2012 | Conference Paper | IST-REx-ID: 2049 | OA
Heyse, Stefan, Eike Kiltz, Vadim Lyubashevsky, Christof Paar, and Krzysztof Z Pietrzak. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” In Conference Proceedings FSE 2012, 7549:346–65. Springer, 2012. https://doi.org/10.1007/978-3-642-34047-5_20.
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2012 | Journal Article | IST-REx-ID: 2263 | OA
Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open 1, no. 12 (2012): 1200–1203. https://doi.org/10.1242/bio.20122287.
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2012 | Journal Article | IST-REx-ID: 2302
Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics 10, no. 2 (2012): 310–22. https://doi.org/10.1109/TCBB.2012.91.
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2012 | Journal Article | IST-REx-ID: 2318 | OA
Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory 2, no. 3 (2012): 321–28. https://doi.org/10.4171/JST/31.
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