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2595 Publications


2013 | Journal Article | IST-REx-ID: 2466   OA
Highly adaptive liquid simulations on tetrahedral meshes
R. Ando, N. Thuerey, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2473   OA
Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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2013 | Conference Paper | IST-REx-ID: 2719
A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
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2013 | Journal Article | IST-REx-ID: 2808   OA
The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
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2013 | Journal Article | IST-REx-ID: 2822   OA
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
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2013 | Journal Article | IST-REx-ID: 2827   OA
Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
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2013 | Journal Article | IST-REx-ID: 2834   OA
Streamwise-localized solutions at the onset of turbulence in pipe flow
M. Avila, F. Mellibovsky, N. Roland, B. Hof, Physical Review Letters 110 (2013).
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2013 | Journal Article | IST-REx-ID: 2839
Interstitial dendritic cell guidance by haptotactic chemokine gradients
M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. De Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
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2013 | Journal Article | IST-REx-ID: 2841
Holding on and letting go: Cadherin turnover in cell intercalation
H. Morita, C.-P.J. Heisenberg, Developmental Cell 24 (2013) 567–569.
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2013 | Journal Article | IST-REx-ID: 2810   OA
Environmental dependence of genetic constraint
M. De Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
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2013 | Journal Article | IST-REx-ID: 2846   OA
Sex differences in host defence interfere with parasite-mediated selection for outcrossing during host-parasite coevolution
L. El Masri, R. Schulte, N. Timmermeyer, S. Thanisch, L. Crummenerl, G. Jansen, N. Michiels, H. Schulenburg, Ecology Letters 16 (2013) 461–468.
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2013 | Journal Article | IST-REx-ID: 2860   OA
Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
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2013 | Journal Article | IST-REx-ID: 2909   OA
Modelling evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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2013 | Journal Article | IST-REx-ID: 2853   OA
Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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2013 | Journal Article | IST-REx-ID: 3116
Code aware resource management
K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods in System Design 42 (2013) 142–174.
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2013 | Journal Article | IST-REx-ID: 2815
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
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2013 | Journal Article | IST-REx-ID: 476   OA View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 508   OA
Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
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2013 | Journal Article | IST-REx-ID: 527
Modeling framework for the establishment of the apical-basal embryonic axis in plants
K.T. Wabnik, H. Robert, R. Smith, J. Friml, Current Biology 23 (2013) 2513–2518.
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2013 | Journal Article | IST-REx-ID: 522
Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells
E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer, G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters 154 (2013) 31–41.
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2013 | Technical Report | IST-REx-ID: 5403   OA
Qualitative analysis of concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff Games, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2327
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
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2013 | Conference Paper | IST-REx-ID: 1374   OA
Infinite-state games with finitary conditions
K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
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2013 | Technical Report | IST-REx-ID: 5410
Automatic generation of alternative starting positions for traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative Starting Positions for Traditional Board Games, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2000   OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
View | Files available | DOI | Download (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2858   OA
The effect of one additional driver mutation on tumor progression
J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
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2013 | Journal Article | IST-REx-ID: 2884
Cell adhesion mechanics of zebrafish gastrulation
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Medecine Sciences 29 (2013) 147–150.
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2013 | Conference Paper | IST-REx-ID: 2295   OA View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2182
Quantitative abstraction refinement
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
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2013 | Conference Paper | IST-REx-ID: 2517
Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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2013 | Technical Report | IST-REx-ID: 5408
The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
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2012 | Conference Paper | IST-REx-ID: 2049   OA
Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
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2012 | Journal Article | IST-REx-ID: 2912
Configuration space for shortest networks
H. Edelsbrunner, N. Strelkova, Uspekhi Mat. Nauk 67 (2012) 203–204.
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2012 | Journal Article | IST-REx-ID: 2943   OA
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
N. Hadizadeh Yazdi, C.C. Guet, R. Johnson, J. Marko, Molecular Microbiology 86 (2012) 1318–1333.
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2012 | Journal Article | IST-REx-ID: 2931
A dual decomposition approach to feature correspondence
L. Torresani, V. Kolmogorov, C. Rother, IEEE Transactions on Pattern Analysis and Machine Intelligence 35 (2012) 259–271.
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2012 | Journal Article | IST-REx-ID: 2917
The game of active search for extra terrestrial intelligence Breaking the Great Silence
H. Vladar, International Journal of Astrobiology 12 (2012) 53–62.
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2012 | Conference Paper | IST-REx-ID: 2974   OA
Commitments and efficient zero knowledge proofs from learning parity with noise
A. Jain, S. Krenn, K.Z. Pietrzak, A. Tentes, in:, X. Wang, K. Sako (Eds.), Springer, 2012, pp. 663–680.
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2012 | Journal Article | IST-REx-ID: 2962   OA
A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.
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2012 | Conference Paper | IST-REx-ID: 3136
Delayed continuous time Markov chains for genetic regulatory circuits
C.C. Guet, A. Gupta, T.A. Henzinger, M. Mateescu, A. Sezgin, in:, Springer, 2012, pp. 294–309.
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2012 | Conference Paper | IST-REx-ID: 3155   OA
Synchronous interface theories and time triggered scheduling
B. Delahaye, U. Fahrenberg, T.A. Henzinger, A. Legay, D. Nickovic, in:, Springer, 2012, pp. 203–218.
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2012 | Conference Paper | IST-REx-ID: 3129   OA
Annotating simplices with a homology basis and its applications
O. Busaryev, S. Cabello, C. Chen, T. Dey, Y. Wang, in:, Springer, 2012, pp. 189–200.
View | DOI | Download (ext.) | arXiv
 

2012 | Journal Article | IST-REx-ID: 3131   OA
Limits to the rate of adaptive substitution in sexual populations
D. Weissman, N.H. Barton, PLoS Genetics 8 (2012).
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2012 | Conference Paper | IST-REx-ID: 3162
Parametric identification of temporal properties
E. Asarin, A. Donzé, O. Maler, D. Nickovic, in:, Springer, 2012, pp. 147–160.
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2012 | Journal Article | IST-REx-ID: 3117   OA
Minimizing a sum of submodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 2246–2258.
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2012 | Journal Article | IST-REx-ID: 3167
NextGen speaks 13
M. Weber, Science 336 (2012) 32–34.
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2012 | Journal Article | IST-REx-ID: 3256   OA
Dual complexes of cubical subdivisions of ℝn
H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
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2012 | Journal Article | IST-REx-ID: 3244
Die Zeit des Abwartens ist vorbei!
P. Danowski, BuB – Forum Bibliothek und Information 64 (2012) 284.
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2012 | Conference Paper | IST-REx-ID: 3282   OA
Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
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2012 | Conference Paper | IST-REx-ID: 3124
Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, in:, ICML, 2012.
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2012 | Technical Report | IST-REx-ID: 5396   OA
Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
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