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3934 Publications
2019 | Journal Article | IST-REx-ID: 439 |

Arithmetic and representation theory of wild character varieties
T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society 21 (2019) 2995–3052.
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T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society 21 (2019) 2995–3052.
2019 | Journal Article | IST-REx-ID: 441 |

Tropical formulae for summation over a part of SL(2,Z)
N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.
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N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.
2019 | Conference Paper | IST-REx-ID: 10877 |

ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics
G. Frehse, A. Abate, D. Adzkiya, A. Becchi, L. Bu, A. Cimatti, M. Giacobbe, A. Griggio, S. Mover, M.S. Mufid, I. Riouak, S. Tonetta, E. Zaffanella, in:, G. Frehse, M. Althoff (Eds.), ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems, EasyChair, 2019, pp. 1–13.
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G. Frehse, A. Abate, D. Adzkiya, A. Becchi, L. Bu, A. Cimatti, M. Giacobbe, A. Griggio, S. Mover, M.S. Mufid, I. Riouak, S. Tonetta, E. Zaffanella, in:, G. Frehse, M. Althoff (Eds.), ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems, EasyChair, 2019, pp. 1–13.
2019 | Journal Article | IST-REx-ID: 7391 |

Electron microscopic detection of single membrane proteins by a specific chemical labeling
S. Tabata, M. Jevtic, N. Kurashige, H. Fuchida, M. Kido, K. Tani, N. Zenmyo, S. Uchinomiya, H. Harada, M. Itakura, I. Hamachi, R. Shigemoto, A. Ojida, IScience 22 (2019) 256–268.
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S. Tabata, M. Jevtic, N. Kurashige, H. Fuchida, M. Kido, K. Tani, N. Zenmyo, S. Uchinomiya, H. Harada, M. Itakura, I. Hamachi, R. Shigemoto, A. Ojida, IScience 22 (2019) 256–268.
2019 | Conference Paper | IST-REx-ID: 7402 |

Graph planning with expected finite horizon
K. Chatterjee, L. Doyen, in:, 34th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2019, pp. 1–13.
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K. Chatterjee, L. Doyen, in:, 34th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2019, pp. 1–13.
2019 | Journal Article | IST-REx-ID: 196 |

Harmonic dynamics of the Abelian sandpile
M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116 (2019) 2821–2830.
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M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116 (2019) 2821–2830.
2019 | Conference Paper | IST-REx-ID: 6884 |

Bidding mechanisms in graph games
G. Avni, T.A. Henzinger, D. Zikelic, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.
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G. Avni, T.A. Henzinger, D. Zikelic, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.
2019 | Journal Article | IST-REx-ID: 6713 |

An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice
J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M. Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F. Chan, ELife 8 (2019).
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J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M. Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F. Chan, ELife 8 (2019).
2019 | Research Data Reference | IST-REx-ID: 9805
Data from: The consequences of an introgression event
N.H. Barton, (2019).
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N.H. Barton, (2019).
2019 | Journal Article | IST-REx-ID: 7550 |

Penalization via global functionals of optimal-control problems for dissipative evolution
L. Portinale, U. Stefanelli, Advances in Mathematical Sciences and Applications 28 (2019) 425–447.
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L. Portinale, U. Stefanelli, Advances in Mathematical Sciences and Applications 28 (2019) 425–447.
2019 | Preprint | IST-REx-ID: 8182 |

Vanishing of all equivariant obstructions and the mapping degree
S. Avvakumov, S. Kudrya, ArXiv (n.d.).
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S. Avvakumov, S. Kudrya, ArXiv (n.d.).
2019 | Conference Paper | IST-REx-ID: 6493 |

Membership-based synthesis of linear hybrid automata
M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.
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M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.
2019 | Conference Paper | IST-REx-ID: 6887 |

Near-linear time algorithms for Streett objectives in graphs and MDPs
K. Chatterjee, W. Dvorák, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.
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K. Chatterjee, W. Dvorák, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.
2019 | Thesis | IST-REx-ID: 6435 |

Collective defenses of garden ants against a fungal pathogen
B.E. Casillas Perez, Collective Defenses of Garden Ants against a Fungal Pathogen, IST Austria, 2019.
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B.E. Casillas Perez, Collective Defenses of Garden Ants against a Fungal Pathogen, IST Austria, 2019.
2019 | Thesis | IST-REx-ID: 6891 |

The implication of cytoskeletal dynamics on leukocyte migration
A. Kopf, The Implication of Cytoskeletal Dynamics on Leukocyte Migration, IST Austria, 2019.
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A. Kopf, The Implication of Cytoskeletal Dynamics on Leukocyte Migration, IST Austria, 2019.
2019 | Thesis | IST-REx-ID: 6269 |

Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants
M. Narasimhan, Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants , IST Austria, 2019.
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M. Narasimhan, Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants , IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6328 |

Nuclear positioning facilitates amoeboid migration along the path of least resistance
J. Renkawitz, A. Kopf, J.A. Stopp, I. de Vries, M.K. Driscoll, J. Merrin, R. Hauschild, E.S. Welf, G. Danuser, R. Fiolka, M.K. Sixt, Nature 568 (2019) 546–550.
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J. Renkawitz, A. Kopf, J.A. Stopp, I. de Vries, M.K. Driscoll, J. Merrin, R. Hauschild, E.S. Welf, G. Danuser, R. Fiolka, M.K. Sixt, Nature 568 (2019) 546–550.
2019 | Journal Article | IST-REx-ID: 6877
The neural crest pitches in to remove apoptotic debris
A. Kopf, M.K. Sixt, Cell 179 (2019) 51–53.
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A. Kopf, M.K. Sixt, Cell 179 (2019) 51–53.
2019 | Thesis | IST-REx-ID: 6947 |

Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking
F.P. Assen, Lymph Node Mechanics: Deciphering the Interplay between Stroma Contractility, Morphology and Lymphocyte Trafficking, IST Austria, 2019.
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F.P. Assen, Lymph Node Mechanics: Deciphering the Interplay between Stroma Contractility, Morphology and Lymphocyte Trafficking, IST Austria, 2019.
2019 | Thesis | IST-REx-ID: 6849 |

The role of CCK-interneurons in regulating hippocampal network dynamics
D.K. Rangel Guerrero, The Role of CCK-Interneurons in Regulating Hippocampal Network Dynamics, IST Austria, 2019.
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D.K. Rangel Guerrero, The Role of CCK-Interneurons in Regulating Hippocampal Network Dynamics, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6189 |

Transition to turbulence in particle laden flows
N. Agrawal, G.H. Choueiri, B. Hof, Physical Review Letters 122 (2019).
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N. Agrawal, G.H. Choueiri, B. Hof, Physical Review Letters 122 (2019).
2019 | Journal Article | IST-REx-ID: 6508 |

Bulk actin dynamics drive phase segregation in zebrafish oocytes
S. Shamipour, R. Kardos, S. Xue, B. Hof, E.B. Hannezo, C.-P.J. Heisenberg, Cell 177 (2019) 1463–1479.e18.
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S. Shamipour, R. Kardos, S. Xue, B. Hof, E.B. Hannezo, C.-P.J. Heisenberg, Cell 177 (2019) 1463–1479.e18.
2019 | Journal Article | IST-REx-ID: 7001 |

Mechanosensation of tight junctions depends on ZO-1 phase separation and flow
C. Schwayer, S. Shamipour, K. Pranjic-Ferscha, A. Schauer, M. Balda, M. Tada, K. Matter, C.-P.J. Heisenberg, Cell 179 (2019) 937–952.e18.
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C. Schwayer, S. Shamipour, K. Pranjic-Ferscha, A. Schauer, M. Balda, M. Tada, K. Matter, C.-P.J. Heisenberg, Cell 179 (2019) 937–952.e18.
2019 | Journal Article | IST-REx-ID: 6848 |

Structure and mechanism of mitochondrial proton-translocating transhydrogenase
D. Kampjut, L.A. Sazanov, Nature 573 (2019) 291–295.
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D. Kampjut, L.A. Sazanov, Nature 573 (2019) 291–295.
2019 | Thesis | IST-REx-ID: 6546 |

The role of a highly conserved major facilitator superfamily member in Drosophila embryonic macrophage migration
K. Valosková, The Role of a Highly Conserved Major Facilitator Superfamily Member in Drosophila Embryonic Macrophage Migration, IST Austria, 2019.
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K. Valosková, The Role of a Highly Conserved Major Facilitator Superfamily Member in Drosophila Embryonic Macrophage Migration, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6830 |

Memo1 tiles the radial glial cell grid
X. Contreras, S. Hippenmeyer, Neuron 103 (2019) 750–752.
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X. Contreras, S. Hippenmeyer, Neuron 103 (2019) 750–752.
2019 | Thesis | IST-REx-ID: 6371 |

On the nature of gene regulatory design - The biophysics of transcription factor binding shapes gene regulation
C. Igler, On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation, IST Austria, 2019.
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C. Igler, On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation, IST Austria, 2019.
2019 | Thesis | IST-REx-ID: 6363 |

Parvalbumin+ interneurons enable efficient pattern separation in hippocampal microcircuits
C. Espinoza Martinez, Parvalbumin+ Interneurons Enable Efficient Pattern Separation in Hippocampal Microcircuits, IST Austria, 2019.
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C. Espinoza Martinez, Parvalbumin+ Interneurons Enable Efficient Pattern Separation in Hippocampal Microcircuits, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6486 |

Relaminarization of pipe flow by means of 3D-printed shaped honeycombs
J. Kühnen, D. Scarselli, B. Hof, Journal of Fluids Engineering 141 (2019).
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J. Kühnen, D. Scarselli, B. Hof, Journal of Fluids Engineering 141 (2019).
2019 | Journal Article | IST-REx-ID: 6228 |

Relaminarising pipe flow by wall movement
D. Scarselli, J. Kühnen, B. Hof, Journal of Fluid Mechanics 867 (2019) 934–948.
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D. Scarselli, J. Kühnen, B. Hof, Journal of Fluid Mechanics 867 (2019) 934–948.
2019 | Journal Article | IST-REx-ID: 6351 |

Re-activation of stem cell pathways for pattern restoration in plant wound healing
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.
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P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.
2019 | Journal Article | IST-REx-ID: 6943 |

Targeted cell ablation-based insights into wound healing and restorative patterning
L. Hörmayer, J. Friml, Current Opinion in Plant Biology 52 (2019) 124–130.
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L. Hörmayer, J. Friml, Current Opinion in Plant Biology 52 (2019) 124–130.
2019 | Thesis | IST-REx-ID: 7132 |

Design and characterization of methods and biological components to realize synthetic neurotransmission
C. Mckenzie, Design and Characterization of Methods and Biological Components to Realize Synthetic Neurotransmission, IST Austria, 2019.
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C. Mckenzie, Design and Characterization of Methods and Biological Components to Realize Synthetic Neurotransmission, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6187 |

A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion
K. Valosková, J. Biebl, M. Roblek, S. Emtenani, A. György, M. Misova, A. Ratheesh, P. Rodrigues, K. Shkarina, I.S.B. Larsen, S.Y. Vakhrushev, H. Clausen, D.E. Siekhaus, ELife 8 (2019).
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K. Valosková, J. Biebl, M. Roblek, S. Emtenani, A. György, M. Misova, A. Ratheesh, P. Rodrigues, K. Shkarina, I.S.B. Larsen, S.Y. Vakhrushev, H. Clausen, D.E. Siekhaus, ELife 8 (2019).
2019 | Journal Article | IST-REx-ID: 5949 |

Disrupted-in-schizophrenia 1 overexpression disrupts hippocampal coding and oscillatory synchronization
K. Käfer, H. Malagon-Vina, D. Dickerson, J. O’Neill, S.V. Trossbach, C. Korth, J.L. Csicsvari, Hippocampus 29 (2019) 802–816.
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K. Käfer, H. Malagon-Vina, D. Dickerson, J. O’Neill, S.V. Trossbach, C. Korth, J.L. Csicsvari, Hippocampus 29 (2019) 802–816.
2019 | Thesis | IST-REx-ID: 6825 |

The hippocampus and medial prefrontal cortex during flexible behavior
K. Käfer, The Hippocampus and Medial Prefrontal Cortex during Flexible Behavior, IST Austria, 2019.
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K. Käfer, The Hippocampus and Medial Prefrontal Cortex during Flexible Behavior, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6260 |

Pinstatic acid promotes auxin transport by inhibiting PIN internalization
A. Oochi, J. Hajny, K. Fukui, Y. Nakao, M.C. Gallei, M. Quareshy, K. Takahashi, T. Kinoshita, S. Harborough, S. Kepinski, H. Kasahara, R. Napier, J. Friml, K. Hayashi, Plant Physiology 180 (2019) 1152–1165.
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A. Oochi, J. Hajny, K. Fukui, Y. Nakao, M.C. Gallei, M. Quareshy, K. Takahashi, T. Kinoshita, S. Harborough, S. Kepinski, H. Kasahara, R. Napier, J. Friml, K. Hayashi, Plant Physiology 180 (2019) 1152–1165.
2019 | Conference Paper | IST-REx-ID: 6378 |

Hybrid Mining: Exploiting blockchain’s computational power for distributed problem solving
K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, 2019, pp. 374–381.
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K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, 2019, pp. 374–381.
2019 | Conference Paper | IST-REx-ID: 6175 |

Cost analysis of nondeterministic probabilistic programs
P. Wang, H. Fu, A.K. Goharshady, K. Chatterjee, X. Qin, W. Shi, in:, PLDI 2019: Proceedings of the 40th ACM SIGPLAN Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2019, pp. 204–220.
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| arXiv
P. Wang, H. Fu, A.K. Goharshady, K. Chatterjee, X. Qin, W. Shi, in:, PLDI 2019: Proceedings of the 40th ACM SIGPLAN Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2019, pp. 204–220.
2019 | Journal Article | IST-REx-ID: 6380 |

Efficient parameterized algorithms for data packing
K. Chatterjee, A.K. Goharshady, N. Okati, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 3 (2019).
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K. Chatterjee, A.K. Goharshady, N. Okati, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 3 (2019).
2019 | Conference Paper | IST-REx-ID: 6490 |

The treewidth of smart contracts
K. Chatterjee, A.K. Goharshady, E.K. Goharshady, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, n.d., pp. 400–408.
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K. Chatterjee, A.K. Goharshady, E.K. Goharshady, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, n.d., pp. 400–408.
2019 | Journal Article | IST-REx-ID: 7158 |

Faster algorithms for dynamic algebraic queries in basic RSMs with constant treewidth
K. Chatterjee, A.K. Goharshady, P. Goyal, R. Ibsen-Jensen, A. Pavlogiannis, ACM Transactions on Programming Languages and Systems 41 (2019).
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K. Chatterjee, A.K. Goharshady, P. Goyal, R. Ibsen-Jensen, A. Pavlogiannis, ACM Transactions on Programming Languages and Systems 41 (2019).
2019 | Conference Paper | IST-REx-ID: 6056 |

Probabilistic smart contracts: Secure randomness on the blockchain
K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, IEEE International Conference on Blockchain and Cryptocurrency, IEEE, 2019.
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K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, IEEE International Conference on Blockchain and Cryptocurrency, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 7014 |

Non-polynomial worst-case analysis of recursive programs
K. Chatterjee, H. Fu, A.K. Goharshady, ACM Transactions on Programming Languages and Systems 41 (2019).
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K. Chatterjee, H. Fu, A.K. Goharshady, ACM Transactions on Programming Languages and Systems 41 (2019).
2019 | Conference Paper | IST-REx-ID: 6780 |

Modular verification for almost-sure termination of probabilistic programs
M. Huang, H. Fu, K. Chatterjee, A.K. Goharshady, in:, Proceedings of the 34th ACM International Conference on Object-Oriented Programming, Systems, Languages, and Applications , ACM, 2019.
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M. Huang, H. Fu, K. Chatterjee, A.K. Goharshady, in:, Proceedings of the 34th ACM International Conference on Object-Oriented Programming, Systems, Languages, and Applications , ACM, 2019.
2018 | Journal Article | IST-REx-ID: 280
KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis
Z. Gao, A. Daneva, Y. Salanenka, M. Van Durme, M. Huysmans, Z. Lin, F. De Winter, S. Vanneste, M. Karimi, J. Van De Velde, K. Vandepoele, D. Van De Walle, K. Dewettinck, B. Lambrecht, M. Nowack, Nature Plants 4 (2018) 365–375.
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| DOI
Z. Gao, A. Daneva, Y. Salanenka, M. Van Durme, M. Huysmans, Z. Lin, F. De Winter, S. Vanneste, M. Karimi, J. Van De Velde, K. Vandepoele, D. Van De Walle, K. Dewettinck, B. Lambrecht, M. Nowack, Nature Plants 4 (2018) 365–375.
2018 | Journal Article | IST-REx-ID: 281 |

Distributed and dynamic intracellular organization of extracellular information
A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkačik, P. Swain, PNAS 115 (2018) 6088–6093.
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A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkačik, P. Swain, PNAS 115 (2018) 6088–6093.
2018 | Journal Article | IST-REx-ID: 282 |

Introgression of a block of genome under infinitesimal selection
H. Sachdeva, N.H. Barton, Genetics 209 (2018) 1279–1303.
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H. Sachdeva, N.H. Barton, Genetics 209 (2018) 1279–1303.
2018 | Journal Article | IST-REx-ID: 283 |

Mutations in blind cavefish target the light regulated circadian clock gene period 2
R.M. Ceinos, E. Frigato, C. Pagano, N. Frohlich, P. Negrini, N. Cavallari, D. Vallone, S. Fuselli, C. Bertolucci, N.S. Foulkes, Scientific Reports 8 (2018).
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R.M. Ceinos, E. Frigato, C. Pagano, N. Frohlich, P. Negrini, N. Cavallari, D. Vallone, S. Fuselli, C. Bertolucci, N.S. Foulkes, Scientific Reports 8 (2018).
2018 | Journal Article | IST-REx-ID: 284 |

Maps on probability measures preserving certain distances - a survey and some new results
D. Virosztek, Acta Scientiarum Mathematicarum (Szeged) 84 (2018) 65–80.
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D. Virosztek, Acta Scientiarum Mathematicarum (Szeged) 84 (2018) 65–80.