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3023 Publications


2017 | Conference Paper | IST-REx-ID: 941
JFIX: Semantics-based repair of Java programs via symbolic PathFinder
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis, ACM, 2017, pp. 376–379.
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2017 | Conference Paper | IST-REx-ID: 942
S3: Syntax- and semantic-guided repair synthesis via programming by examples
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, ACM, 2017, pp. 593–604.
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2017 | Journal Article | IST-REx-ID: 943 | OA
Decoding of position in the developing neural tube from antiparallel morphogen gradients
M.P. Zagórski, Y. Tabata, N. Brandenberg, M. Lutolf, G. Tkačik, T. Bollenbach, J. Briscoe, A. Kicheva, Science 356 (2017) 1379–1383.
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2017 | Journal Article | IST-REx-ID: 944
Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
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2017 | Journal Article | IST-REx-ID: 945 | OA
Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome
A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
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2017 | Conference Paper | IST-REx-ID: 950 | OA
Infinite-duration bidding games
G. Avni, T.A. Henzinger, V.K. Chonev, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
View | Files available | DOI | arXiv
 

2017 | Journal Article | IST-REx-ID: 951 | OA
Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, PLoS Biology 15 (2017).
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2017 | Journal Article | IST-REx-ID: 952 | OA
Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti
M. Turelli, N.H. Barton, Theoretical Population Biology 115 (2017) 45–60.
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2017 | Journal Article | IST-REx-ID: 953 | OA
The sources of adaptive evolution
D. Charlesworth, N.H. Barton, B. Charlesworth, Proceedings of the Royal Society of London Series B Biological Sciences 284 (2017).
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2017 | Journal Article | IST-REx-ID: 954 | OA
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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2017 | Journal Article | IST-REx-ID: 946 | OA
Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
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2017 | Journal Article | IST-REx-ID: 947 | OA
Quantifying the entropic cost of cellular growth control
D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
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2017 | Research Data | IST-REx-ID: 5566 | OA View | Files available | DOI
 

2017 | Conference Paper | IST-REx-ID: 949 | OA
JTDec: A tool for tree decompositions in soot
K. Chatterjee, A.K. Goharshady, A. Pavlogiannis, in:, D. D’Souza (Ed.), Springer, 2017, pp. 59–66.
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2017 | Conference Paper | IST-REx-ID: 639 | OA
Non-polynomial worst case analysis of recursive programs
K. Chatterjee, H. Fu, A.K. Goharshady, in:, R. Majumdar, V. Kunčak (Eds.), Springer, 2017, pp. 41–63.
View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 

2017 | Journal Article | IST-REx-ID: 664
The dynamic cytokine niche
F.P. Assen, M.K. Sixt, Immunity 46 (2017) 519–520.
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2017 | Journal Article | IST-REx-ID: 1024 | OA
Methodological advances in auxin and cytokinin biology
A. Hurny, E. Benková, Auxins and Cytokinins in Plant Biology 1569 (2017) 1–29.
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2016 | Journal Article | IST-REx-ID: 1008
An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.
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2016 | Journal Article | IST-REx-ID: 1081 | OA
Cellular mechanisms for cargo delivery and polarity maintenance at different polar domains in plant cells
Ł. Łangowski, K.T. Wabnik, H. Li, S. Vanneste, S. Naramoto, H. Tanaka, J. Friml, Cell Discovery 2 (2016).
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2016 | Conference Paper | IST-REx-ID: 1082 | OA
Relevant sparse codes with variational information bottleneck
M.J. Chalk, O. Marre, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 1965–1973.
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2016 | Journal Article | IST-REx-ID: 1083
KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons
S. Booker, D. Althof, A. Gross, D. Loreth, J. Müller, A. Unger, B. Fakler, A. Varro, M. Watanabe, M. Gassmann, B. Bettler, R. Shigemoto, I. Vida, Á. Kulik, Cerebral Cortex 27 (2016) 2318–2334.
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2016 | Conference Paper | IST-REx-ID: 1090 | OA
Nested weighted limit-average automata of bounded width
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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2016 | Conference Paper | IST-REx-ID: 1068 | OA
Conditionally optimal algorithms for generalized Büchi Games
K. Chatterjee, W. Dvorák, M. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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2016 | Conference Paper | IST-REx-ID: 1069 | OA
On the skolem problem for continuous linear dynamical systems
V.K. Chonev, J. Ouaknine, J. Worrell, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.
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2016 | Conference Paper | IST-REx-ID: 1070 | OA
Computation tree logic for synchronization properties
K. Chatterjee, L. Doyen, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.
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2016 | Book Chapter | IST-REx-ID: 1094
Immunogold protein localization on grid-glued freeze-fracture replicas
H. Harada, R. Shigemoto, in:, High-Resolution Imaging of Cellular Proteins, Springer, 2016, pp. 203–216.
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2016 | Conference Paper | IST-REx-ID: 1095 | OA
Local linearizability for concurrent container-type data structures
A. Haas, T.A. Henzinger, A. Holzer, C. Kirsch, M. Lippautz, H. Payer, A. Sezgin, A. Sokolova, H. Veith, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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2016 | Journal Article | IST-REx-ID: 1101
Rangefinder: A semisynthetic FRET sensor design algorithm
J. Mitchell, J. Whitfield, W. Zhang, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, ACS SENSORS 1 (2016) 1286–1290.
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2016 | Conference Paper | IST-REx-ID: 1102 | OA
Improving weakly-supervised object localization by micro-annotation
A. Kolesnikov, C. Lampert, in:, Proceedings of the British Machine Vision Conference 2016, BMVA Press, 2016, p. 92.1-92.12.
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2016 | Conference Paper | IST-REx-ID: 1103 | OA
Parallel reachability analysis for hybrid systems
A. Gurung, A. Deka, E. Bartocci, S. Bogomolov, R. Grosu, R. Ray, in:, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1105
Estimating nonlinear neural response functions using GP priors and Kronecker methods
C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
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2016 | Conference Paper | IST-REx-ID: 1097 | OA
Computational multicopter design
T. Du, A. Schulz, B. Zhu, B. Bickel, W. Matusik, in:, ACM, 2016.
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2016 | Conference Paper | IST-REx-ID: 1098 | OA
Lifelong learning with weighted majority votes
A. Pentina, R. Urner, in:, Neural Information Processing Systems, 2016, pp. 3619–3627.
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2016 | Conference Paper | IST-REx-ID: 1099 | OA
FlexMolds: Automatic design of flexible shells for molding
L. Malomo, N. Pietroni, B. Bickel, P. Cignoni, in:, ACM, 2016.
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2016 | Conference Paper | IST-REx-ID: 1115 | OA
Efficient single sideband microwave to optical conversion using a LiNbO inf 3 inf WGM-resonator
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
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2016 | Thesis | IST-REx-ID: 1126 | OA
Theoretical foundations of multi-task lifelong learning
A. Pentina, Theoretical Foundations of Multi-Task Lifelong Learning, IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1121
Selective barriers to horizontal gene transfer
H. Acar, Selective Barriers to Horizontal Gene Transfer, IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1124
Optical functionalization of human class A orphan G-protein coupled receptors
M. Morri, Optical Functionalization of Human Class A Orphan G-Protein Coupled Receptors, IST Austria, 2016.
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2016 | Conference Paper | IST-REx-ID: 1134
Tutorial: Software tools for hybrid systems verification transformation and synthesis C2E2 HyST and TuLiP
P. Duggirala, C. Fan, M. Potok, B. Qi, S. Mitra, M. Viswanathan, S. Bak, S. Bogomolov, T. Johnson, L. Nguyen, C. Schilling, A. Sogokon, H. Tran, W. Xiang, in:, 2016 IEEE Conference on Control Applications, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1135 | OA
Synthesizing time triggered schedules for switched networks with faulty links
G. Avni, S. Guha, G. Rodríguez Navas, in:, Proceedings of the 13th International Conference on Embedded Software , ACM, 2016.
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2016 | Conference Paper | IST-REx-ID: 1136 | OA
Space-time sculpting of liquid animation
P. Manteaux, U. Vimont, C.J. Wojtan, D. Rohmer, M. Cani, in:, Proceedings of the 9th International Conference on Motion in Games , ACM, 2016.
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2016 | Journal Article | IST-REx-ID: 1137 | OA
RASGRP1 deficiency causes immunodeficiency with impaired cytoskeletal dynamics
E. Salzer, D. Çaǧdaş, M. Hons, E. Mace, W. Garncarz, O. Petronczki, R. Platzer, L. Pfajfer, I. Bilic, S. Ban, K. Willmann, M. Mukherjee, V. Supper, H. Hsu, P. Banerjee, P. Sinha, F. Mcclanahan, G. Zlabinger, W. Pickl, J. Gribben, H. Stockinger, K. Bennett, J. Huppa, L. Dupré, Ö. Sanal, U. Jäger, M.K. Sixt, I. Tezcan, J. Orange, K. Boztug, Nature Immunology 17 (2016) 1352–1360.
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2016 | Conference Paper | IST-REx-ID: 1138 | OA
Quantitative automata under probabilistic semantics
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings of the 31st Annual ACM/IEEE Symposium, IEEE, 2016, pp. 76–85.
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2016 | Conference Paper | IST-REx-ID: 1140 | OA
Model and objective separation with conditional lower bounds disjunction is harder than conjunction
K. Chatterjee, W. Dvoák, M. Henzinger, V. Loitzenbauer, in:, Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2016, pp. 197–206.
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2016 | Journal Article | IST-REx-ID: 1141
Hierarchic genetic strategy with maturing as a generic tool for multiobjective optimization
R. Łazarz, M. Idzik, K. Gądek, E.P. Gajda-Zagorska, Journal of Computational Science 17 (2016) 249–260.
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2016 | Journal Article | IST-REx-ID: 1142 | OA
Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions
R. Martins, J. Maier, A. Gorki, K. Huber, O. Sharif, P. Starkl, S. Saluzzo, F. Quattrone, R. Gawish, K. Lakovits, M. Aichinger, B. Radic Sarikas, C. Lardeau, A. Hladik, A. Korosec, M. Brown, K. Vaahtomeri, M. Duggan, D. Kerjaschki, H. Esterbauer, J. Colinge, S. Eisenbarth, T. Decker, K. Bennett, S. Kubicek, M.K. Sixt, G. Superti Furga, S. Knapp, Nature Immunology 17 (2016) 1361–1372.
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2016 | Journal Article | IST-REx-ID: 1143 | OA
Ground states of large bosonic systems: The gross Pitaevskii limit revisited
P. Nam, N. Rougerie, R. Seiringer, Analysis and PDE 9 (2016) 459–485.
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2016 | Thesis | IST-REx-ID: 1128 | OA
Studying the complexities of transcriptional regulation
G. Rieckh, Studying the Complexities of Transcriptional Regulation, IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1129
Quantitative analysis of haptotactic cell migration
J. Schwarz, Quantitative Analysis of Haptotactic Cell Migration, IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1149
A study of rigorous ODE integrators for multi scale set oriented computations
T. Miyaji, P. Pilarczyk, M. Gameiro, H. Kokubu, K. Mischaikow, Applied Numerical Mathematics 107 (2016) 34–47.
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