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3241 Publications


2010 | Journal Article | IST-REx-ID: 3789
Stereotypical cell division orientation controls neural rod midline formation in zebrafish
E. Quesada-Hernández, L. Caneparo, S. Schneider, S. Winkler, M. Liebling, S. Fraser, C.-P.J. Heisenberg, Current Biology 20 (2010) 1966–1972.
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2010 | Journal Article | IST-REx-ID: 3790 | OA
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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2010 | Journal Article | IST-REx-ID: 3792
The yolk syncytial layer in early, zebrafish development
L. Carvalho, C.-P.J. Heisenberg, Trends in Cell Biology 20 (2010) 586–592.
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2010 | Conference Paper | IST-REx-ID: 3793 | OA
On parameter learning in CRF-based approaches to object class image segmentation
S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
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2010 | Conference Paper | IST-REx-ID: 3794 View | DOI | Download None (ext.)
 

2010 | Book Chapter | IST-REx-ID: 3795 | OA
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Journal Article | IST-REx-ID: 3832 | OA
Beyond TARPs: The growing list of auxiliary AMPAR subunits
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
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2010 | Journal Article | IST-REx-ID: 3833 View | DOI
 

2010 | Journal Article | IST-REx-ID: 3834 | OA
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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2010 | Conference Paper | IST-REx-ID: 3838 | OA
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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2010 | Conference Paper | IST-REx-ID: 3840
From boolean to quantitative notions of correctness
T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
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2010 | Journal Article | IST-REx-ID: 3842 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
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2010 | Conference Paper | IST-REx-ID: 3845 | OA
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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2010 | Conference Paper | IST-REx-ID: 3847 | OA
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3848
The robustness of level sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, in:, Springer, 2010, pp. 1–10.
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2010 | Conference Paper | IST-REx-ID: 3849 | OA
Persistent homology under non-uniform error
P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3850
Polygonal reconstruction from approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, TU Dortmund, 2010, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 | OA
Energy parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2010 | Conference Paper | IST-REx-ID: 3852 | OA
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
View | Files available | DOI | arXiv
 

2010 | Conference Paper | IST-REx-ID: 3853 | OA
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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2010 | Conference Paper | IST-REx-ID: 3854
Obliging games
K. Chatterjee, F. Horn, C. Löding, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 284–296.
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2010 | Conference Paper | IST-REx-ID: 3855 | OA
Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
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2010 | Conference Paper | IST-REx-ID: 3856 | OA
Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
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2010 | Conference Paper | IST-REx-ID: 3857
Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
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2010 | Conference Paper | IST-REx-ID: 3858 | OA
The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
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2010 | Conference (Editor) | IST-REx-ID: 3859
Formal modeling and analysis of timed systems
K. Chatterjee, T.A. Henzinger, eds., Formal Modeling and Analysis of Timed Systems, Springer, 2010.
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2010 | Conference Paper | IST-REx-ID: 3860 | OA
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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2010 | Journal Article | IST-REx-ID: 3861 | OA
Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
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2010 | Journal Article | IST-REx-ID: 3863 | OA
Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
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2010 | Conference Paper | IST-REx-ID: 3864 | OA
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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2010 | Conference Paper | IST-REx-ID: 3865
Analyzing the impact of change in multi-threaded programs
K. Chatterjee, L. De Alfaro, V. Raman, C. Sánchez, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 293–307.
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2010 | Conference Paper | IST-REx-ID: 3866 | OA
Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
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2010 | Journal Article | IST-REx-ID: 3868 | OA
Algorithms for game metrics
K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
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2010 | Journal Article | IST-REx-ID: 3901 | OA
Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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2010 | Thesis | IST-REx-ID: 3962
Dendritic cell migration across basement membranes in the skin
H. Pflicke,   Dendritic Cell Migration across Basement Membranes in the Skin, IST Austria, 2010.
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2010 | Journal Article | IST-REx-ID: 4134
Why is adaptation prevented at ecological margins? New insights from individual-based simulations
J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
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2010 | Journal Article | IST-REx-ID: 4157 | OA
Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
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2010 | Journal Article | IST-REx-ID: 4243 | OA
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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2010 | Book Chapter | IST-REx-ID: 4339 | OA
Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch
J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
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2010 | Book | IST-REx-ID: 4346 | OA
Handbuch Bibliothek 2.0
P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
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2010 | Conference Paper | IST-REx-ID: 4362
Runtime verification for software transactional memories
V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
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2010 | Conference Paper | IST-REx-ID: 4369 | OA
From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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2010 | Conference Paper | IST-REx-ID: 4378 | OA
Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
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2010 | Conference Paper | IST-REx-ID: 4380 | OA
A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
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2010 | Conference Paper | IST-REx-ID: 4381 | OA
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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2010 | Conference Paper | IST-REx-ID: 4382 | OA
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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2010 | Conference Paper | IST-REx-ID: 4388 | OA
GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
View | Files available | DOI | arXiv
 

2010 | Conference Paper | IST-REx-ID: 4389 | OA
Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
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2010 | Conference Paper | IST-REx-ID: 4390 | OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
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2010 | Book Chapter | IST-REx-ID: 4392
Quantitative Simulation Games
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Z. Manna, D. Peled (Eds.), Time For Verification: Essays in Memory of Amir Pnueli, Springer, 2010, pp. 42–60.
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2010 | Conference Paper | IST-REx-ID: 4393 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
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2010 | Conference Paper | IST-REx-ID: 4396 | OA
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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2010 | Journal Article | IST-REx-ID: 3303 | OA
The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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2010 | Journal Article | IST-REx-ID: 3498
Intra-operative ultrasound facilitates the localization of the calcific deposit during arthroscopic treatment of calcifying tendinitis
M. Sabeti Aschraf, C. Gonano, E. Nemecek, L. Cichocki, C. Schueller Weidekamm, Knee Surgery, Sports Traumatology, Arthroscopy 18 (2010) 1792–1794.
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2010 | Journal Article | IST-REx-ID: 3604 View | DOI
 

2010 | Conference Paper | IST-REx-ID: 4361 | OA
Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
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2009 | Technical Report | IST-REx-ID: 5392 | OA
Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
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2009 | Technical Report | IST-REx-ID: 5393 | OA
Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
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2009 | Technical Report | IST-REx-ID: 5394 | OA
Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
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2009 | Technical Report | IST-REx-ID: 5395 | OA
Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
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2009 | Journal Article | IST-REx-ID: 3775 | OA
On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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2009 | Journal Article | IST-REx-ID: 3780 | OA View | Files available | DOI
 

2009 | Conference Paper | IST-REx-ID: 3837 | OA
On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
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2009 | Conference Paper | IST-REx-ID: 3841 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
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2009 | Conference Paper | IST-REx-ID: 3844 | OA
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
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2009 | Journal Article | IST-REx-ID: 3870 | OA
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
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2009 | Conference Paper | IST-REx-ID: 3871 | OA
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
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2009 | Conference Paper | IST-REx-ID: 3968 | OA
The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
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2009 | Journal Article | IST-REx-ID: 4136 | OA
Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2009 | Journal Article | IST-REx-ID: 4231
Statistical mechanics and the evolution of polygenic quantitative traits
N.H. Barton, H. De Vladar, Genetics 181 (2009) 997–1011.
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2009 | Journal Article | IST-REx-ID: 4242 | OA
The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
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2009 | Conference Paper | IST-REx-ID: 4542 | OA
Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
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2009 | Conference Paper | IST-REx-ID: 4543
Stochastic games with finitary objectives
K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
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2009 | Conference Paper | IST-REx-ID: 4545 | OA
A survey of stochastic games with limsup and liminf objectives
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
View | DOI | Download Preprint (ext.) | arXiv
 

2009 | Book Chapter | IST-REx-ID: 3675
Why sex and recombination?
N.H. Barton, in:, Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
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2008 | Journal Article | IST-REx-ID: 517 View | DOI
 

2008 | Journal Article | IST-REx-ID: 6149
Sleep: dozy worms and sleepy flies
B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.
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