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3453 Publications


2014 | Journal Article | IST-REx-ID: 2253 | OA
Expression of TWISTED DWARF1 lacking its in-plane membrane anchor leads to increased cell elongation and hypermorphic growth
A. Bailly, B. Wang, M. Zwiewka, S. Pollmann, D. Schenck, H. Lüthen, A. Schulz, J. Friml, M. Geisler, Plant Journal 77 (2014) 108–118.
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2014 | Journal Article | IST-REx-ID: 2254 | OA View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 2255 | OA
Stable length estimates of tube-like shapes
H. Edelsbrunner, F. Pausinger, Journal of Mathematical Imaging and Vision 50 (2014) 164–177.
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2014 | Journal Article | IST-REx-ID: 2257 | OA
Searching for collective behavior in a large network of sensory neurons
G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).
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2014 | Journal Article | IST-REx-ID: 468 | OA
Invasive parasites habitat change and heavy rainfall reduce breeding success in Darwin's finches
A. Cimadom, A. Ulloa, P. Meidl, M. Zöttl, E. Zöttl, B. Fessl, E. Nemeth, M. Dvorak, F. Cunninghame, S. Tebbich, PLoS One 9 (2014).
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2014 | Conference Paper | IST-REx-ID: 475 | OA
First cycle games
B. Aminof, S. Rubin, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing Association, 2014, pp. 83–90.
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2014 | Journal Article | IST-REx-ID: 535 | OA
Polynomial time algorithms for energy games with special weight structures
K. Chatterjee, M. Henzinger, S. Krinninger, D. Nanongkai, Algorithmica 70 (2014) 457–492.
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2014 | Journal Article | IST-REx-ID: 537 | OA
Fitness consequences of maternal and grandmaternal effects
R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
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2014 | Technical Report | IST-REx-ID: 5411 | OA
Compositional specifications for IOCO testing
P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, Compositional Specifications for IOCO Testing, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5412 | OA
CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5413 | OA
CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5414 | OA
CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5415 | OA
Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5416 | OA
Model measuring for hybrid systems
T.A. Henzinger, J. Otop, Model Measuring for Hybrid Systems, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5417 | OA
From model checking to model measuring
T.A. Henzinger, J. Otop, From Model Checking to Model Measuring, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5418 | OA
Games with a weak adversary
K. Chatterjee, L. Doyen, Games with a Weak Adversary, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5419 | OA
Improved algorithms for reachability and shortest path on low tree-width graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Improved Algorithms for Reachability and Shortest Path on Low Tree-Width Graphs, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5420 | OA
The value 1 problem for concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, The Value 1 Problem for Concurrent Mean-Payoff Games, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5421 | OA
The complexity of evolution on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolution on Graphs, IST Austria, 2014.
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2014 | Report | IST-REx-ID: 5422 | OA
Notes from Research Data Alliance Plenary Meeting in Dublin, Ireland
J. Porsche, Notes from Research Data Alliance Plenary Meeting in Dublin, Ireland, none, 2014.
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2014 | Technical Report | IST-REx-ID: 5423 | OA
A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks
K. Chatterjee, A. Kössler, A. Pavlogiannis, U. Schmid, A Framework for Automated Competitive Analysis of On-Line Scheduling of Firm-Deadline Tasks, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5424 | OA
Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5425 | OA
Optimal cost almost-sure reachability in POMDPs
1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, Optimal Cost Almost-Sure Reachability in POMDPs, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5426 | OA
Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5427 | OA
Optimal tree-decomposition balancing and reachability on low treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Optimal Tree-Decomposition Balancing and Reachability on Low Treewidth Graphs, IST Austria, 2014.
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2014 | Technical Report | IST-REx-ID: 5428 | OA
Quantitative fair simulation games
K. Chatterjee, T.A. Henzinger, J. Otop, Y. Velner, Quantitative Fair Simulation Games, IST Austria, 2014.
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2014 | Book Chapter | IST-REx-ID: 6178
UV laser ablation to measure cell and tissue-generated forces in the zebrafish embryo in vivo and ex vivo
M. Smutny, M. Behrndt, P. Campinho, V. Ruprecht, C.-P.J. Heisenberg, in:, C. Nelson (Ed.), Tissue Morphogenesis, Springer, New York, NY, 2014, pp. 219–235.
View | DOI | PubMed | Europe PMC
 

2014 | Book | IST-REx-ID: 6853
A Short Course in Computational Geometry and Topology
H. Edelsbrunner, A Short Course in Computational Geometry and Topology, Springer International Publishing, Cham, 2014.
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2014 | Working Paper | IST-REx-ID: 7038 | OA
Playful Math - An introduction to mathematical games
K. Huszár, M. Rolinek, Playful Math - An Introduction to Mathematical Games, IST Austria, n.d.
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2014 | Journal Article | IST-REx-ID: 1375 | OA
Approximating the minimum cycle mean
K. Chatterjee, M. Henzinger, S. Krinninger, V. Loitzenbauer, M. Raskin, Theoretical Computer Science 547 (2014) 104–116.
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2014 | Conference Paper | IST-REx-ID: 1392 | OA
A logic-based framework for verifying consensus algorithms
C. Dragoi, T.A. Henzinger, H. Veith, J. Widder, D. Zufferey, in:, Springer, 2014, pp. 161–181.
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2014 | Conference Paper | IST-REx-ID: 1393 | OA
Probabilistic programming
A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
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2014 | Thesis | IST-REx-ID: 1395
Immune defences in ants: Effects of social immunisation and a fungal ectosymbiont in the ant Lasius neglectus
M. Konrad, Immune Defences in Ants: Effects of Social Immunisation and a Fungal Ectosymbiont in the Ant Lasius Neglectus, IST Austria, 2014.
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2014 | Thesis | IST-REx-ID: 1402
Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis thaliana
P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, IST Austria, 2014.
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2014 | Thesis | IST-REx-ID: 1403
Forces driving epithelial spreading in zebrafish epiboly
M. Behrndt, Forces Driving Epithelial Spreading in Zebrafish Epiboly, IST Austria, 2014.
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2014 | Thesis | IST-REx-ID: 1404
Evolution of a fungal pathogen towards individual versus social immunity in ants
M. Stock, Evolution of a Fungal Pathogen towards Individual versus Social Immunity in Ants, IST Austria, 2014.
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2014 | Conference Paper | IST-REx-ID: 1507 | OA
Random matrices, log-gases and Hölder regularity
L. Erdös, in:, Kyung Moon SA Co. Ltd., 2014, pp. 214–236.
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2014 | Conference Paper | IST-REx-ID: 1516 | OA
On the BCS gap equation for superfluid fermionic gases
G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.
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2014 | Journal Article | IST-REx-ID: 1532
Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source
H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2014) 239–251.
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2014 | Journal Article | IST-REx-ID: 1629 | OA
Edit propagation using geometric relationship functions
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, ACM Transactions on Graphics 33 (2014).
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2014 | Conference Paper | IST-REx-ID: 1643 | OA
Constrained Verifiable Random Functions
G. Fuchsbauer, in:, M. Abdalla, R. De Prisco (Eds.), SCN 2014, Springer, 2014, pp. 95–114.
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2014 | Journal Article | IST-REx-ID: 3263 | OA
Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
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2014 | Conference Paper | IST-REx-ID: 2218 | OA
Regression-free synthesis for concurrency
P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2014, pp. 568–584.
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2014 | Conference Paper | IST-REx-ID: 2159 | OA
Eliminating Tverberg points, I. An analogue of the Whitney trick
I. Mabillard, U. Wagner, in:, Proceedings of the Annual Symposium on Computational Geometry, ACM, 2014, pp. 171–180.
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2014 | Journal Article | IST-REx-ID: 2023 | OA View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 1913 | OA
Patterns of hippocampal tau pathology differentiate neurodegenerative dementias
I. Milenković, T. Petrov, G. Kovács, Dementia and Geriatric Cognitive Disorders 38 (2014) 375–388.
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2014 | Journal Article | IST-REx-ID: 2036 | OA
Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
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2014 | Research Data Reference | IST-REx-ID: 9740 View | Files available | DOI
 

2014 | Research Data Reference | IST-REx-ID: 9741 View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 2161
Increased grooming after repeated brood care provides sanitary benefits in a clonal ant
C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, Behavioral Ecology and Sociobiology 68 (2014) 1701–1710.
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2014 | Journal Article | IST-REx-ID: 2083 | OA
Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
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2014 | Research Data Reference | IST-REx-ID: 9747
Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
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2014 | Research Data Reference | IST-REx-ID: 9753
Data from: Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies
S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, (2014).
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2014 | Research Data Reference | IST-REx-ID: 9752
Data from: Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
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2014 | Journal Article | IST-REx-ID: 2170 | OA
Likelihood-based inference of population history from low-coverage de novo genome assemblies
J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular Ecology 23 (2014) 198–211.
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2014 | Journal Article | IST-REx-ID: 2004 | OA
Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H. Byrne, A. Dinnyés, K. Kovács, PLoS One 9 (2014).
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2014 | Research Data Reference | IST-REx-ID: 9722
Transition probability between TF expression states when Dbx2 inhibits Nkx2.2
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács, (2014).
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2014 | Journal Article | IST-REx-ID: 2039 | OA
The time scale of evolutionary innovation
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Nowak, PLoS Computational Biology 10 (2014).
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2014 | Research Data Reference | IST-REx-ID: 9739
Detailed proofs for “The time scale of evolutionary innovation”
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Novak, (2014).
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2014 | Journal Article | IST-REx-ID: 2086 | OA
So near and yet so far: Harmonic radar reveals reduced homing ability of Nosema infected honeybees
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, PLoS One 9 (2014).
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2014 | Research Data Reference | IST-REx-ID: 9888
Supporting information
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, (2014).
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2014 | Journal Article | IST-REx-ID: 9931 View | Files available | DOI | PubMed | Europe PMC
 
 

2014 | Journal Article | IST-REx-ID: 1999
Organisational immunity in social insects
N. Stroeymeyt, B.E. Casillas Perez, S. Cremer, Current Opinion in Insect Science 5 (2014) 1–15.
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2013 | Conference Paper | IST-REx-ID: 2260 | OA
Efficient signatures of knowledge and DAA in the standard model
D. Bernhard, G. Fuchsbauer, E. Ghadafi, 7954 (2013) 518–533.
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2013 | Journal Article | IST-REx-ID: 2264 | OA
Neural development is dependent on the function of specificity protein 2 in cell cycle progression
H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, T. Ghashghaei, Development 140 (2013) 552–561.
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2013 | Conference Paper | IST-REx-ID: 2270 | OA
Optimal Coalition Structures in Cooperative Graph Games
Y. Bachrach, P. Kohli, V. Kolmogorov, M. Zadimoghaddam, in:, AAAI Press, 2013, pp. 81–87.
View | Download None (ext.) | arXiv
 

2013 | Conference Paper | IST-REx-ID: 2272 | OA
Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, International Machine Learning Society, 2013, pp. 145–153.
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2013 | Report | IST-REx-ID: 2273 | OA
Reweighted message passing revisited
V. Kolmogorov, Reweighted Message Passing Revisited, IST Austria, 2013.
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2013 | Report | IST-REx-ID: 2274 | OA
Proofs of Space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2276 | OA
Potts model, parametric maxflow and k-submodular functions
I. Gridchyn, V. Kolmogorov, in:, IEEE, 2013, pp. 2320–2327.
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2013 | Journal Article | IST-REx-ID: 2278
A serrate-notch-canoe complex mediates essential interactions between glia and neuroepithelial cells during Drosophila optic lobe development
R. Pérez Gómez, J. Slovakova, N. Rives Quinto, A. Krejčí, A. Carmena, Journal of Cell Science 126 (2013) 4873–4884.
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2013 | Conference Paper | IST-REx-ID: 2279 | OA
Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, 8172 (2013) 118–132.
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2013 | Journal Article | IST-REx-ID: 2280 | OA
Packing ellipsoids with overlap
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
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2013 | Journal Article | IST-REx-ID: 2282 | OA
Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly
P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, C.-P.J. Heisenberg, Nature Cell Biology 15 (2013) 1405–1414.
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2013 | Journal Article | IST-REx-ID: 2283
Tolerating an infection: an indirect benefit of co-founding queen associations in the ant Lasius niger
C. Pull, W. Hughes, M. Brown, Naturwissenschaften 100 (2013) 1125–1136.
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2013 | Journal Article | IST-REx-ID: 2286 | OA
The force and effect of cell proliferation
P. Campinho, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 2783–2784.
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2013 | Journal Article | IST-REx-ID: 2287 | OA View | Files available | DOI
 

2013 | Conference (Editor) | IST-REx-ID: 2288
Computational Methods in Systems Biology
A. Gupta, T.A. Henzinger, eds., Computational Methods in Systems Biology, Springer, 2013.
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2013 | Journal Article | IST-REx-ID: 2289 | OA
Quantitative reactive modeling and verification
T.A. Henzinger, Computer Science Research and Development 28 (2013) 331–344.
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2013 | Journal Article | IST-REx-ID: 2290 | OA
ECHIDNA mediated post Golgi trafficking of auxin carriers for differential cell elongation
Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J. Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
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2013 | Conference Paper | IST-REx-ID: 2291 | OA
Cryptographically enforced RBAC
A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
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2013 | Conference (Editor) | IST-REx-ID: 2292
Mathematical Foundations of Computer Science 2013
K. Chatterjee, J. Sgall, eds., Mathematical Foundations of Computer Science 2013, Springer, 2013.
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2013 | Conference Paper | IST-REx-ID: 2293 | OA
Learning to rank using privileged information
V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
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2013 | Conference Paper | IST-REx-ID: 2294 | OA
Drosophila Embryo Stage Annotation using Label Propagation
T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
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2013 | Conference Paper | IST-REx-ID: 2295 | OA View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2297 | OA
Hot topics in cold gases: A mathematical physics perspective
R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
View | DOI | Download Preprint (ext.) | arXiv
 

2013 | Conference Paper | IST-REx-ID: 2298 | OA
Local shape analysis for overlaid data structures
C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2299 | OA
Synthesis of AMBA AHB from formal specification: A case study
Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software Tools for Technology Transfer 15 (2013) 585–601.
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2013 | Journal Article | IST-REx-ID: 2300 | OA
Realization of stripes and slabs in two and three dimensions
A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
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2013 | Conference Paper | IST-REx-ID: 2301
P: Safe asynchronous event-driven programming
A. Desai, V. Gupta, E. Jackson, S. Qadeer, S. Rajamani, D. Zufferey, in:, Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation, ACM, 2013, pp. 321–331.
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2013 | Journal Article | IST-REx-ID: 2303
Dissection of gene function at clonal level using mosaic analysis with double markers
S. Hippenmeyer, Frontiers in Biology 8 (2013) 557–568.
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2013 | Journal Article | IST-REx-ID: 2304
Van der Corput sequences and linear permutations
F. Pausinger, Electronic Notes in Discrete Mathematics 43 (2013) 43–50.
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2013 | Conference Paper | IST-REx-ID: 2305 | OA
Trading performance for stability in Markov decision processes
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Book | IST-REx-ID: 2306 | OA
(Open) Linked Data in Bibliotheken
P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2327 | OA
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2328 | OA
Aspect-oriented linearizability proofs
T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
View | Files available | DOI
 

2013 | Conference Paper | IST-REx-ID: 2329 | OA
Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2410 | OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
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2013 | Journal Article | IST-REx-ID: 2412 | OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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