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2493 Publications


2012 | Journal Article | IST-REx-ID: 3243
Danowski P. 2012. Zwischen Technologie und Information. Büchereiperspektiven. 1/2012, 11.
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2012 | Journal Article | IST-REx-ID: 3262   OA
Tkacik G, Walczak A, Bialek W. 2012. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review E statistical nonlinear and soft matter physics . 85(4).
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2012 | Journal Article | IST-REx-ID: 3274
Rieckh G, Kreuzer W, Waubke H, Balazs P. 2012. A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil. Engineering Analysis with Boundary Elements. 36(6), 960–967.
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2012 | Conference Paper | IST-REx-ID: 3279
Jain A, Pietrzak KZ, Tentes A. 2012. Hardness preserving constructions of pseudorandom functions. TCC: Theory of Cryptography Conference, LNCS, vol. 7194. 369–382.
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2012 | Conference Paper | IST-REx-ID: 3281
Pietrzak KZ, Rosen A, Segev G. 2012. Lossy functions do not amplify well. TCC: Theory of Cryptography Conference, LNCS, vol. 7194. 458–475.
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2012 | Conference Paper | IST-REx-ID: 495   OA
Kruckman A, Rubin S, Sheridan J, Zax B. 2012. A Myhill Nerode theorem for automata with advice. Proceedings GandALF 2012. GandALF: Games, Automata, Logics and Formal Verification, EPTCS, vol. 96. 238–246.
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2012 | Journal Article | IST-REx-ID: 6588   OA
Pausinger F. 2012. Elementary solutions of the bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. 8(1), 63–78.
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2011 | Conference Paper | IST-REx-ID: 3270
Chen C, Kerber M. 2011. Persistent homology computation with a twist. EuroCG: European Workshop on Computational Geometry 197–200.
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2011 | Thesis | IST-REx-ID: 3275
Schumann K. 2011. The role of chemotactic gradients in dendritic cell migration, IST Austria, 141p.
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2011 | Journal Article | IST-REx-ID: 3287
Ruprecht V, Axmann M, Wieser S, Schuetz G. 2011. What can we learn from single molecule trajectories? Current Protein & Peptide Science. 12(8), 714–724.
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2011 | Conference Paper | IST-REx-ID: 3299   OA
Henzinger TA, Mateescu M. 2011. Propagation models for computing biochemical reaction networks. CMSB: Computational Methods in Systems Biology 1–3.
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2011 | Conference Paper | IST-REx-ID: 3302   OA
Henzinger TA, Singh A, Singh V, Wies T, Zufferey D. 2011. Static scheduling in clouds. HotCloud: Workshop on Hot Topics in Cloud Computing 1–6.
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2011 | Conference Paper | IST-REx-ID: 3319
Quadrianto N, Lampert C. 2011. Learning multi-view neighborhood preserving projections. ICML: International Conference on Machine Learning 425–432.
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2011 | Conference Paper | IST-REx-ID: 3326
Almagor S, Boker U, Kupferman O. 2011. What’s decidable about weighted automata . ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6996. 482–491.
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2011 | Journal Article | IST-REx-ID: 3383
Heisenberg C-PJ. 2011. Invited Lectures ‐ Symposia Area. FEBS Journal. 278(S1), 24–24.
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2011 | Journal Article | IST-REx-ID: 3388   OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. 2011. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 11(201), 201.
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2011 | Journal Article | IST-REx-ID: 3390   OA
Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3395
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas . Biological Journal of the Linnean Society. 104(2), 407–418.
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2011 | Journal Article | IST-REx-ID: 3352
Fisher J, Harel D, Henzinger TA. 2011. Biology as reactivity. Communications of the ACM. 54(10), 72–82.
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2011 | Journal Article | IST-REx-ID: 3369
Pernia-Andrade A, Jonas PM. 2011. The multiple faces of RIM. Neuron. 69(2), 185–187.
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2011 | Journal Article | IST-REx-ID: 3371   OA
Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3364   OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2011. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 412(21), 2128–2141.
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2011 | Conference Paper | IST-REx-ID: 3357
Chatterjee K, Henzinger TA, Horn F. 2011. The complexity of request-response games. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 227–237.
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2011 | Journal Article | IST-REx-ID: 3376   OA
Bollenbach MT, Kishony R. 2011. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 42(4), 413–425.
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2011 | Journal Article | IST-REx-ID: 3965
Wang B, Edelsbrunner H, Morozov D. 2011. Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. 16(2.2), 1–13.
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2011 | Journal Article | IST-REx-ID: 491
Eichner A, Sixt MK. 2011. Setting the clock for recirculating lymphocytes. Science Signaling. 4(198).
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2011 | Journal Article | IST-REx-ID: 504   OA
Polechova J, Barton NH, Marion G. 2011. Erratum: Species’ range: Adaptation in space and time (American Naturalist 174 (E186 E204)) . American Naturalist. 177(4), 546–547.
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2011 | Conference Paper | IST-REx-ID: 3345
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6907. 206–218.
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2011 | Technical Report | IST-REx-ID: 5384   OA
Chatterjee K, Tracol M. 2011. Decidable problems for probabilistic automata on infinite words, IST Austria, 30p.
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2011 | Preprint | IST-REx-ID: 3338
Chatterjee K. 2011. Bounded rationality in concurrent parity games. arXiv., 1–51.
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2011 | Conference Paper | IST-REx-ID: 3264
Gupta A, Popeea C, Rybalchenko A. 2011. Solving recursion-free Horn clauses over LI+UIF. APLAS: Asian Symposium on Programming Languages and Systems, LNCS, vol. 7078. 188–203.
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2011 | Journal Article | IST-REx-ID: 3269
Sheng Y, Cutler B, Chen C, Nasman J. 2011. Perceptual global illumination cancellation in complex projection environments. Computer Graphics Forum. 30(4), 1261–1268.
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2011 | Book Chapter | IST-REx-ID: 3271
Wagner H, Chen C, Vuçini E. 2011. Efficient computation of persistent homology for cubical data. Topological Methods in Data Analysis and Visualization II. , Theory, Algorithms, and Applications, 91–106.
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2011 | Journal Article | IST-REx-ID: 3288   OA
Smutny M, Wu S, Gomez G, Mangold S, Yap A, Hamilton N. 2011. Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. 6(7).
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2011 | Journal Article | IST-REx-ID: 3290   OA
Lohse K, Harrison R, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics. 189(3), 977–987.
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2011 | Preprint | IST-REx-ID: 3339   OA
Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv.
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2011 | Conference Paper | IST-REx-ID: 3163
Lampert C. 2011. Maximum margin multi-label structured prediction. NIPS: Neural Information Processing Systems
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2011 | Journal Article | IST-REx-ID: 3315   OA
Chatterjee K, Henzinger TA, Prabhu V. 2011. Timed parity games: Complexity and robustness. Logical Methods in Computer Science. 7(4).
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2011 | Conference Poster | IST-REx-ID: 3322
Lampert C. 2011. Maximum margin multi label structured prediction, Neural Information Processing Systems,p.
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2011 | Journal Article | IST-REx-ID: 3334
Edelsbrunner H, Pach J, Ziegler G. 2011. Letter from the new editors-in-chief. Discrete & Computational Geometry. 45(1), 1–2.
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2011 | Conference Paper | IST-REx-ID: 3346   OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science
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2011 | Journal Article | IST-REx-ID: 3353   OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4).
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2011 | Conference Paper | IST-REx-ID: 3358
Henzinger TA, Singh V, Wies T, Zufferey D. 2011. Scheduling large jobs by abstraction refinement. EuroSys 329–342.
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2011 | Conference Paper | IST-REx-ID: 3360   OA
Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12. 82–96.
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2011 | Journal Article | IST-REx-ID: 3372   OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Conference Paper | IST-REx-ID: 3365   OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605. 267–271.
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2011 | Journal Article | IST-REx-ID: 3377   OA
Edelsbrunner H, Morozov D, Patel A. 2011. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 11(3), 345–361.
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2011 | Journal Article | IST-REx-ID: 3771
Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.
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2011 | Journal Article | IST-REx-ID: 3505
Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3384   OA
Tkacik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6).
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2011 | Journal Article | IST-REx-ID: 3389
Blaschko M, Shelton J, Bartels A, Lampert C, Gretton A. 2011. Semi supervised kernel canonical correlation analysis with application to human fMRI. Pattern Recognition Letters. 32(11), 1572–1583.
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2011 | Journal Article | IST-REx-ID: 3391   OA
de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3396   OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
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2011 | Journal Article | IST-REx-ID: 531
Guerraoui R, Henzinger TA, Singh V. 2011. Verification of STM on relaxed memory models. Formal Methods in System Design. 39(3), 297–331.
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2011 | Technical Report | IST-REx-ID: 5380   OA
Chatterjee K. 2011. Bounded rationality in concurrent parity games, IST Austria, 53p.
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2011 | Technical Report | IST-REx-ID: 5385   OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values, IST Austria, 14p.
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2011 | Journal Article | IST-REx-ID: 6496   OA
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
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2011 | Book Chapter | IST-REx-ID: 3311
Edelsbrunner H. 2011. Alpha shapes - a survey. Tessellations in the Sciences.
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2011 | Conference Paper | IST-REx-ID: 3359
Cerny P, Henzinger TA. 2011. From boolean to quantitative synthesis. EMSOFT: Embedded Software 149–154.
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2011 | Conference Paper | IST-REx-ID: 3361   OA
Cerny P, Chatterjee K, Henzinger TA. 2011. The complexity of quantitative information flow problems. CSF: Computer Security Foundations 205–217.
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2011 | Conference Paper | IST-REx-ID: 3330   OA
Kerber M, Sagraloff M. 2011. Root refinement for real polynomials. ISSAC: International Symposium on Symbolic and Algebraic Computation 209–216.
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2011 | Book Chapter | IST-REx-ID: 3335   OA
Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen M, Caroli M, Teillaud M. 2011. Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. Transactions on Computational Science XIV. Special Issue on Voronoi Diagrams and Delaunay Triangulation, LNCS, vol. 6970. 60–101.
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2011 | Conference Paper | IST-REx-ID: 3328
Berberich E, Hemmer M, Kerber M. 2011. A generic algebraic kernel for non linear geometric applications. SCG: Symposium on Computational Geometry 179–186.
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2011 | Conference Paper | IST-REx-ID: 3342   OA
Chatterjee K, Henzinger M, Joglekar M, Nisarg S. 2011. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. CAV: Computer Aided Verification, LNCS, vol. 6806. 260–276.
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2011 | Conference Paper | IST-REx-ID: 3347   OA
Chatterjee K, Fijalkow N. 2011. Finitary languages. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 216–226.
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2011 | Journal Article | IST-REx-ID: 3354
Chatterjee K, De Alfaro L, Henzinger TA. 2011. Qualitative concurrent parity games. ACM Transactions on Computational Logic (TOCL). 12(4).
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2011 | Conference Paper | IST-REx-ID: 3316
Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2011. Specification-centered robustness. 6th IEEE International Symposium on Industrial and Embedded Systems. SIES: International Symposium on Industrial Embedded Systems 176–185.
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2011 | Journal Article | IST-REx-ID: 3784
Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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2011 | Book Chapter | IST-REx-ID: 3791
Krens G, Heisenberg C-PJ. 2011. Cell sorting in development. Current Topics in Developmental Biology. Forces and Tension in Development, Cell Sorting in Development, vol. 95. 189–213.
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2011 | Book Chapter | IST-REx-ID: 3796   OA
Edelsbrunner H, Kerber M. 2011. Covering and packing with spheres by diagonal distortion in R^n. Rainbow of Computer Science. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday, LNCS, vol. 6570. 20–35.
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2011 | Journal Article | IST-REx-ID: 3385
Sixt MK. 2011. Interstitial locomotion of leukocytes. Immunology Letters. 138(1), 32–34.
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2011 | Journal Article | IST-REx-ID: 3392
Soriano S, Hons M, Schumann K, Kumar V, Dennier T, Lyck R, Sixt MK, Stein J. 2011. In vivo analysis of uropod function during physiological T cell trafficking. Journal of Immunology. 187(5), 2356–2364.
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2011 | Journal Article | IST-REx-ID: 3397   OA
Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.
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2011 | Journal Article | IST-REx-ID: 3405   OA
Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.
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2011 | Journal Article | IST-REx-ID: 3429
Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. 2011. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology. 13(2), 117–123.
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2011 | Journal Article | IST-REx-ID: 3373   OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3378
Bendich P, Harer J. 2011. Persistent intersection homology. Foundations of Computational Mathematics. 11(3), 305–336.
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2011 | Journal Article | IST-REx-ID: 3380
Logeswaran S, Barton NH. 2011. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 93(3), 221–232.
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2011 | Journal Article | IST-REx-ID: 518
Schraivogel D, Weinmann L, Beier D, Tabatabai G, Eichner A, Zhu J, Anton M, Sixt MK, Weller M, Beier C, Meister G. 2011. CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. 30(20), 4309–4322.
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2011 | Technical Report | IST-REx-ID: 5381   OA
Chatterjee K, Doyen L. 2011. Partial-observation stochastic games: How to win when belief fails, IST Austria, 43p.
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2011 | Technical Report | IST-REx-ID: 5379   OA
Chatterjee K, Henzinger M. 2011. An O(n2) time algorithm for alternating Büchi games, IST Austria, 20p.
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2011 | Conference Paper | IST-REx-ID: 3323
Wies T, Muñiz M, Kuncak V. 2011. An efficient decision procedure for imperative tree data structures. CADE 23: Automated Deduction , LNAI , vol. 6803. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3366
Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. 2011. Quantitative synthesis for concurrent programs. CAV: Computer Aided Verification, LNCS, vol. 6806. 243–259.
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2011 | Technical Report | IST-REx-ID: 5386   OA
Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation, IST Austria, 69p.
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2011 | Conference Paper | IST-REx-ID: 3266
Ion A, Carreira J, Sminchisescu C. 2011. Probabilistic joint image segmentation and labeling. NIPS Proceedings. NIPS: Neural Information Processing Systems vol. 24. 1827–1835.
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2011 | Thesis | IST-REx-ID: 3273
Maître J-L. 2011. Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors, IST Austria,p.
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2011 | Conference Paper | IST-REx-ID: 3297   OA
Wojtan CJ, Müller Fischer M, Brochu T. 2011. Liquid simulation with mesh-based surface tracking. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques
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2011 | Conference Poster | IST-REx-ID: 3312   OA
Zheng Y, Gu S, Edelsbrunner H, Tomasi C, Benfey P. 2011. Detailed reconstruction of 3D plant root shape, IEEE,p.
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2011 | Conference Paper | IST-REx-ID: 3329   OA
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2011. Deconstructing approximate offsets. Proceedings of the twenty-seventh annual symposium on Computational geometry. SCG: Symposium on Computational Geometry 187–196.
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2011 | Conference Paper | IST-REx-ID: 3343   OA
Chatterjee K, Henzinger M. 2011. Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification. SODA: Symposium on Discrete Algorithms 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3324   OA
Piskac R, Wies T. 2011. Decision procedures for automating termination proofs. VMCAI: Verification Model Checking and Abstract Interpretation, LNCS, vol. 6538. 371–386.
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2011 | Journal Article | IST-REx-ID: 3386
Schrempf A, Cremer S, Heinze J. 2011. Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies. Journal of Evolutionary Biology. 24(7), 1455–1461.
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2011 | Journal Article | IST-REx-ID: 3393   OA
Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2011 | Journal Article | IST-REx-ID: 3374   OA
Tkacik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15).
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2011 | Journal Article | IST-REx-ID: 3379   OA
Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. 2011. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1), 102–110.
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2011 | Conference Paper | IST-REx-ID: 3348   OA
Chatterjee K, Prabhu V. 2011. Synthesis of memory efficient real time controllers for safety objectives. HSCC: Hybrid Systems - Computation and Control 221–230.
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2011 | Conference Paper | IST-REx-ID: 3350
Chatterjee K, Majumdar R. 2011. Minimum attention controller synthesis for omega regular objectives. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6919. 145–159.
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2011 | Conference Paper | IST-REx-ID: 3355   OA
Halalai R, Henzinger TA, Singh V. 2011. Quantitative evaluation of BFT protocols. QEST: Quantitative Evaluation of Systems 255–264.
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2011 | Conference Paper | IST-REx-ID: 3362
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901. 404–418.
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2011 | Conference Paper | IST-REx-ID: 3367
Chen C, Kerber M. 2011. An output sensitive algorithm for persistent homology. SoCG: Symposium on Computational Geometry 207–216.
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