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2425 Publications


2011 | Book Chapter | IST-REx-ID: 3791
Cell sorting in development
G. Krens, C.-P.J. Heisenberg, in:, M. Labouesse (Ed.), Current Topics in Developmental Biology, Elsevier, 2011, pp. 189–213.
View | DOI
 

2011 | Book Chapter | IST-REx-ID: 3796   OA
Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
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2011 | Journal Article | IST-REx-ID: 3378
Persistent intersection homology
P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
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2011 | Journal Article | IST-REx-ID: 3380
Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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2011 | Conference Paper | IST-REx-ID: 3359
From boolean to quantitative synthesis
P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
View | DOI
 

2011 | Conference Paper | IST-REx-ID: 3361   OA
The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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2011 | Journal Article | IST-REx-ID: 518
CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
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2011 | Technical Report | IST-REx-ID: 5379   OA
An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3323
An efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, in:, Springer, 2011, pp. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3366
Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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2011 | Journal Article | IST-REx-ID: 3373
Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3385
Interstitial locomotion of leukocytes
M.K. Sixt, Immunology Letters 138 (2011) 32–34.
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2011 | Conference Paper | IST-REx-ID: 3347   OA
Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
View | DOI | Download (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3316
Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
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2011 | Technical Report | IST-REx-ID: 5386
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5381
Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
View | Files available | DOI
 

2011 | Thesis | IST-REx-ID: 3273
Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors
J.-L. Maître, Mechanics of Adhesion and De‐adhesion in Zebrafish Germ Layer Progenitors, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3297   OA
Liquid simulation with mesh-based surface tracking
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
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2011 | Conference Poster | IST-REx-ID: 3312   OA
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3324   OA
Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3362
Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, J.-P. Katoen, B. König (Eds.), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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2011 | Conference Paper | IST-REx-ID: 3348   OA
Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3350
Minimum attention controller synthesis for omega regular objectives
K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
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2011 | Conference Paper | IST-REx-ID: 3343   OA View | DOI | Download (ext.)
 

2011 | Journal Article | IST-REx-ID: 3778   OA
Estimating linkage disequilibria
N.H. Barton, Heredity 106 (2011) 205–206.
View | DOI | Download (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3386
Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies
A. Schrempf, S. Cremer, J. Heinze, Journal of Evolutionary Biology 24 (2011) 1455–1461.
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2011 | Journal Article | IST-REx-ID: 3393   OA
Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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2011 | Journal Article | IST-REx-ID: 3374   OA
Information transmission in genetic regulatory networks a review
G. Tkacik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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2011 | Journal Article | IST-REx-ID: 3381
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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2011 | Conference Paper | IST-REx-ID: 3367
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
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2011 | Technical Report | IST-REx-ID: 5382   OA
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5387   OA
Energy and mean-payoff parity Markov decision processes
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 3379   OA
Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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2011 | Conference Paper | IST-REx-ID: 3355   OA
Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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2011 | Conference Paper | IST-REx-ID: 3266
Probabilistic joint image segmentation and labeling
A. Ion, J. Carreira, C. Sminchisescu, in:, NIPS Proceedings, Neural Information Processing Systems Foundation, 2011, pp. 1827–1835.
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2011 | Conference Paper | IST-REx-ID: 3336
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, in:, CVPR: Computer Vision and Pattern Recognition, IEEE, 2011, pp. 2089–2096.
View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3329
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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2011 | Conference Paper | IST-REx-ID: 3298   OA
Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
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2011 | Conference Paper | IST-REx-ID: 3301   OA
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
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2011 | Conference Paper | IST-REx-ID: 3313   OA
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011, p. 6126271.
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2011 | Journal Article | IST-REx-ID: 3318   OA View | DOI | Download (ext.)
 

2011 | Journal Article | IST-REx-ID: 3320
Structured learning and prediction in computer vision
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
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2011 | Conference Paper | IST-REx-ID: 3325 View | DOI
 

2011 | Journal Article | IST-REx-ID: 3382
Learning dynamic tactile sensing with robust vision based training
O. Kroemer, C. Lampert, J. Peters, IEEE Transactions on Robotics 27 (2011) 545–557.
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2011 | Journal Article | IST-REx-ID: 3387   OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3394   OA
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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2011 | Journal Article | IST-REx-ID: 3399   OA View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3370   OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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2011 | Preprint | IST-REx-ID: 3363   OA
The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
View | Download (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3349   OA
A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3351   OA
On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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2011 | Journal Article | IST-REx-ID: 3375   OA
The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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2011 | Conference Paper | IST-REx-ID: 3337
Learning anticipation policies for robot table tennis
Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
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2011 | Conference Paper | IST-REx-ID: 3344
Graph games with reachability objectives
K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
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2011 | Journal Article | IST-REx-ID: 3332
A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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2011 | Journal Article | IST-REx-ID: 490   OA
BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
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2011 | Journal Article | IST-REx-ID: 469   OA
Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
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2011 | Conference Paper | IST-REx-ID: 3356
Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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2011 | Technical Report | IST-REx-ID: 5383   OA
On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3781
The difference in length of curves in R^n
B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.
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2011 | Journal Article | IST-REx-ID: 3368   OA
Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
View | DOI | Download (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3267
Hardness results for homology localization
C. Chen, D. Freedman, Discrete & Computational Geometry 45 (2011) 425–448.
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2010 | Conference Paper | IST-REx-ID: 3782
Topology noise removal for curve and surface evolution
C. Chen, D. Freedman, in:, Conference Proceedings MCV 2010, Springer, 2010, pp. 31–42.
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2010 | Journal Article | IST-REx-ID: 3787   OA
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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2010 | Conference Paper | IST-REx-ID: 3794 View | DOI | Download (ext.)
 

2010 | Journal Article | IST-REx-ID: 3833 View | DOI
 

2010 | Conference Paper | IST-REx-ID: 3838   OA
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3840
From boolean to quantitative notions of correctness
T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
View | DOI
 

2010 | Conference Paper | IST-REx-ID: 3845   OA
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3864   OA
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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2010 | Journal Article | IST-REx-ID: 4134
Why is adaptation prevented at ecological margins? New insights from individual-based simulations
J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
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2010 | Conference Paper | IST-REx-ID: 4362
Runtime verification for software transactional memories
V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
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2010 | Conference Paper | IST-REx-ID: 489   OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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2010 | Conference Paper | IST-REx-ID: 4393
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
View | Files available | DOI
 

2010 | Technical Report | IST-REx-ID: 5389   OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
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2010 | Conference Paper | IST-REx-ID: 3857
Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
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2010 | Technical Report | IST-REx-ID: 5391   OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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2010 | Conference Paper | IST-REx-ID: 4381   OA
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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2010 | Journal Article | IST-REx-ID: 3718
P2Y1 receptors inhibit long-term depression in the prefrontal cortex.
J. Guzmán, H. Schmidt, H. Franke, U. Krügel, J. Eilers, P. Illes, Z. Gerevich, Neuropharmacology 59 (2010) 406–415.
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2010 | Conference Paper | IST-REx-ID: 3852   OA
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
View | Files available | DOI | arXiv
 

2010 | Journal Article | IST-REx-ID: 3303   OA
The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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2010 | Journal Article | IST-REx-ID: 3776   OA
Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3783
Microsatelight – Pipeline to expedite microsatellite analysis
F. Palero, F. González Candelas, M. Pascual, Journal of Heredity 102 (2010) 247–249.
View | DOI
 

2010 | Journal Article | IST-REx-ID: 3788
Finite-size corrections to scaling behavior in sorted cell aggregates
A. Klopper, G. Krens, S. Grill, C.-P.J. Heisenberg, The European Physical Journal E: Soft Matter and Biological Physics 33 (2010) 99–103.
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2010 | Journal Article | IST-REx-ID: 3790   OA
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010) e1000544.
View | Files available | DOI
 

2010 | Book Chapter | IST-REx-ID: 3795   OA
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3834   OA
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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2010 | Conference Paper | IST-REx-ID: 3839   OA
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3853   OA
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3858
The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, C. Fermüller, A. Voronkov (Eds.), Springer, 2010, pp. 1–14.
View | DOI
 

2010 | Conference Paper | IST-REx-ID: 3865
Analyzing the impact of change in multi-threaded programs
K. Chatterjee, L. De Alfaro, V. Raman, C. Sánchez, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 293–307.
View | DOI
 

2010 | Journal Article | IST-REx-ID: 4243   OA
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 4382   OA
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3860   OA
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
View | Files available | DOI
 

2010 | Conference Paper | IST-REx-ID: 3719   OA
Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
View | Files available | arXiv
 

2010 | Journal Article | IST-REx-ID: 3498
Intra-operative ultrasound facilitates the localization of the calcific deposit during arthroscopic treatment of calcifying tendinitis
M. Sabeti Aschraf, C. Gonano, E. Nemecek, L. Cichocki, C. Schueller Weidekamm, Knee Surgery, Sports Traumatology, Arthroscopy 18 (2010) 1792–1794.
View | DOI
 

2010 | Journal Article | IST-REx-ID: 3772   OA
Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010) e1000987.
View | Files available | DOI
 

2010 | Journal Article | IST-REx-ID: 3777   OA
Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
View | DOI | Download (ext.) | PubMed | Europe PMC
 

2010 | Conference Paper | IST-REx-ID: 3847   OA
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3854
Obliging games
K. Chatterjee, F. Horn, C. Löding, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 284–296.
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