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2492 Publications


2012 | Journal Article | IST-REx-ID: 3260   OA
Evolutionary dynamics of biological auctions
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
View | Files available | DOI | Download (ext.) | PubMed | Europe PMC
 

2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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2012 | Book Chapter | IST-REx-ID: 3277
Can the evolution of multicellularity be anticipated in the exploration of the solar system?
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
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2012 | Journal Article | IST-REx-ID: 3289   OA
A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
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2012 | Journal Article | IST-REx-ID: 493   OA
Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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2012 | Journal Article | IST-REx-ID: 498   OA
Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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2012 | Journal Article | IST-REx-ID: 506   OA
Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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2012 | Conference Paper | IST-REx-ID: 2957
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012, p. 6280437.
View | Files available | DOI | Download (ext.) | arXiv
 

2012 | Report | IST-REx-ID: 5398   OA
Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 3246
Cell adhesion in embryo morphogenesis
V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
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2012 | Journal Article | IST-REx-ID: 2263   OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
View | DOI | PubMed | Europe PMC
 

2012 | Conference Paper | IST-REx-ID: 2888
Quantitative reactive models
T.A. Henzinger, in:, Conference Proceedings MODELS 2012, Springer, 2012, pp. 1–2.
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2012 | Conference Paper | IST-REx-ID: 2890
Synthesis from incompatible specifications
P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 53–62.
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2012 | Conference Paper | IST-REx-ID: 2903   OA
The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
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2012 | Conference Paper | IST-REx-ID: 2915
Multi-modal learning for dynamic tactile sensing
O. Kroemer, C. Lampert, J. Peters, in:, Deutsches Zentrum für Luft und Raumfahrt, 2012.
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2012 | Journal Article | IST-REx-ID: 2941   OA
On the optimality of functionals over triangulations of Delaunay sets
N. Dolbilin, H. Edelsbrunner, O. Musin, Russian Mathematical Surveys 67 (2012) 781–783.
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2012 | Journal Article | IST-REx-ID: 2946   OA
MicroRNAs associated with the different human Argonaute proteins
A. Dueck, C. Ziegler, A. Eichner, E. Berezikov, G. Meister, Nucleic Acids Research 40 (2012) 9850–9862.
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2012 | Journal Article | IST-REx-ID: 2958   OA
Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.
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2012 | Journal Article | IST-REx-ID: 2965   OA
Kontext Open Access: Creative Commons
P. Danowski, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 65 (2012) 200–212.
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2012 | Journal Article | IST-REx-ID: 2953
Cell-cell adhesion and extracellular matrix diversity counts
C.-P.J. Heisenberg, R. Fässler, Current Opinion in Cell Biology 24 (2012) 559–561.
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2012 | Journal Article | IST-REx-ID: 3122
Disassortative mating and the maintenance of sexual polymorphism in painted maple
D. Field, S. Barrett, Molecular Ecology 21 (2012) 3640–3643.
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2012 | Conference Paper | IST-REx-ID: 3127   OA
The most persistent soft-clique in a set of sampled graphs
N. Quadrianto, C. Lampert, C. Chen, in:, Proceedings of the 29th International Conference on Machine Learning, Omnipress, 2012, pp. 211–218.
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2012 | Conference Paper | IST-REx-ID: 3134
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B. Fasy, G. Rote, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 91–100.
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2012 | Journal Article | IST-REx-ID: 3242   OA
Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, S. Tragust, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, PLoS Biology 10 (2012) e1001300.
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2012 | Journal Article | IST-REx-ID: 3158   OA
Tissue inducible Lifeact expression allows visualization of actin dynamics in vivo and ex vivo
H. Schachtner, A. Li, D. Stevenson, S. Calaminus, S. Thomas, S. Watson, M.K. Sixt, R. Wedlich Söldner, D. Strathdee, L. Machesky, European Journal of Cell Biology 91 (2012) 923–929.
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2012 | Journal Article | IST-REx-ID: 3160
Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo
P. Pantazis, T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
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2012 | Journal Article | IST-REx-ID: 3247
Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus)
S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
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2012 | Journal Article | IST-REx-ID: 3254
The complexity of stochastic Müller games
K. Chatterjee, Information and Computation 211 (2012) 29–48.
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2012 | Conference Paper | IST-REx-ID: 3280   OA
Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
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2012 | Journal Article | IST-REx-ID: 3331   OA
A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
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2012 | Journal Article | IST-REx-ID: 3317   OA
Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
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2012 | Journal Article | IST-REx-ID: 3115
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, Discrete & Computational Geometry 48 (2012) 964–989.
View | Files available | DOI | Download (ext.) | arXiv
 

2012 | Journal Article | IST-REx-ID: 3836
Separate compilation of hierarchical real-time programs into linear-bounded embedded machine code
A. Ghosal, D. Iercan, C. Kirsch, T.A. Henzinger, A. Sangiovanni Vincentelli, Science of Computer Programming 77 (2012) 96–112.
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2012 | Journal Article | IST-REx-ID: 2972
Energy parity games
K. Chatterjee, L. Doyen, Theoretical Computer Science 458 (2012) 49–60.
View | Files available | DOI | arXiv
 

2012 | Journal Article | IST-REx-ID: 494
Translating to Co-Büchi made tight, unified, and useful
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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2012 | Conference Paper | IST-REx-ID: 3165
An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, in:, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, 2012, pp. 1386–1399.
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2012 | Conference Paper | IST-REx-ID: 2048   OA
Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
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2012 | Journal Article | IST-REx-ID: 2411   OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
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2012 | Conference Paper | IST-REx-ID: 2891   OA
Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.
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2012 | Journal Article | IST-REx-ID: 2904   OA
Weak multipliers for generalized van der Corput sequences
F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749.
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2012 | Preprint | IST-REx-ID: 2928   OA
Generalized sequential tree-reweighted message passing
V. Kolmogorov, T. Schoenemann, ArXiv (2012).
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2012 | Conference Paper | IST-REx-ID: 2930   OA
Towards minimizing k-submodular functions
A. Huber, V. Kolmogorov, in:, Springer, 2012, pp. 451–462.
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2012 | Conference Paper | IST-REx-ID: 2942
Independent implementability of viewpoints
T.A. Henzinger, D. Nickovic, in:, Conference Proceedings Monterey Workshop 2012, Springer, 2012, pp. 380–395.
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2012 | Conference Paper | IST-REx-ID: 2947   OA
Equivalence of games with probabilistic uncertainty and partial observation games
K. Chatterjee, M. Chmelik, R. Majumdar, in:, Springer, 2012, pp. 385–399.
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2012 | Journal Article | IST-REx-ID: 2954   OA
A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo
A. Pernia-Andrade, S. Goswami, Y. Stickler, U. Fröbe, A. Schlögl, P.M. Jonas, Biophysical Journal 103 (2012) 1429–1439.
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2012 | Journal Article | IST-REx-ID: 2966   OA
The dynamics of male-male competition in Cardiocondyla obscurior ants
S. Cremer, M. Suefuji, A. Schrempf, J. Heinze, BMC Ecology 12 (2012) 7.
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2012 | Conference Paper | IST-REx-ID: 2916   OA
Interface Simulation Distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, 2012, pp. 29–42.
View | Files available | DOI | Download (ext.) | arXiv
 

2012 | Journal Article | IST-REx-ID: 2959   OA
Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.
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2012 | Journal Article | IST-REx-ID: 3130   OA
Patterns of evolutionary conservation of essential genes correlate with their compensability
T. Bergmiller, M. Ackermann, O. Silander, PLoS Genetics 8 (2012).
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2012 | Conference Paper | IST-REx-ID: 3123   OA
Explicit mesh surfaces for particle based fluids
J. Yu, C.J. Wojtan, G. Turk, C. Yap, in:, Computer Graphics Forum, Blackwell Publishing, 2012, pp. 815–824.
View | Files available | DOI
 

2012 | Journal Article | IST-REx-ID: 3128   OA
A survey of partial-observation stochastic parity games
K. Chatterjee, L. Doyen, T.A. Henzinger, Formal Methods in System Design 43 (2012) 268–284.
View | Files available | DOI
 

2012 | Journal Article | IST-REx-ID: 3159   OA
Hierarchical ordering of reticular networks
Y. Mileyko, H. Edelsbrunner, C. Price, J. Weitz, PLoS One 7 (2012).
View | Files available | DOI
 

2012 | Journal Article | IST-REx-ID: 3161   OA View | Files available | DOI
 

2012 | Conference Paper | IST-REx-ID: 3250
Cryptography from learning parity with noise
K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
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2012 | Journal Article | IST-REx-ID: 3166   OA
Amino acid fermentation at the origin of the genetic code
H. Vladar, Biology Direct 7 (2012).
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2012 | Conference Paper | IST-REx-ID: 3135   OA
Efficient controller synthesis for consumption games with multiple resource types
B. Brázdil, K. Chatterjee, A. Kučera, P. Novotny, in:, Springer, 2012, pp. 23–38.
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2012 | Journal Article | IST-REx-ID: 3248   OA
Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components
C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.
View | Files available | DOI
 

2012 | Conference Paper | IST-REx-ID: 3255
Games and Markov decision processes with mean payoff parity and energy parity objectives
K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
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2012 | Journal Article | IST-REx-ID: 3243
Zwischen Technologie und Information
P. Danowski, Büchereiperspektiven 1/2012 (2012) 11.
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2012 | Journal Article | IST-REx-ID: 3262   OA
Optimizing information flow in small genetic networks. III. A self-interacting gene
G. Tkacik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
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2012 | Journal Article | IST-REx-ID: 3274
A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
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2012 | Conference Paper | IST-REx-ID: 3279
Hardness preserving constructions of pseudorandom functions
A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
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2012 | Conference Paper | IST-REx-ID: 3281
Lossy functions do not amplify well
K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
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2012 | Conference Paper | IST-REx-ID: 495   OA
A Myhill Nerode theorem for automata with advice
A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
View | Files available | DOI
 

2012 | Journal Article | IST-REx-ID: 6588   OA
Elementary solutions of the bernstein problem on two intervals
F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.
View | Download (ext.) | WoS
 

2011 | Conference Paper | IST-REx-ID: 3270
Persistent homology computation with a twist
C. Chen, M. Kerber, in:, TU Dortmund, 2011, pp. 197–200.
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2011 | Thesis | IST-REx-ID: 3275
The role of chemotactic gradients in dendritic cell migration
K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 3287
What can we learn from single molecule trajectories?
V. Ruprecht, M. Axmann, S. Wieser, G. Schuetz, Current Protein & Peptide Science 12 (2011) 714–724.
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2011 | Conference Paper | IST-REx-ID: 3299   OA
Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3302   OA
Static scheduling in clouds
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
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2011 | Conference Paper | IST-REx-ID: 3319
Learning multi-view neighborhood preserving projections
N. Quadrianto, C. Lampert, in:, Omnipress, 2011, pp. 425–432.
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2011 | Conference Paper | IST-REx-ID: 3326
What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, T. Bultan, P.-A. Hsiung (Eds.), Springer, 2011, pp. 482–491.
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2011 | Journal Article | IST-REx-ID: 3383
Invited Lectures ‐ Symposia Area
C.-P.J. Heisenberg, FEBS Journal 278 (2011) 24–24.
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2011 | Journal Article | IST-REx-ID: 3388   OA
Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011) 201.
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3390   OA
The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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2011 | Journal Article | IST-REx-ID: 3395
Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas
F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, Biological Journal of the Linnean Society 104 (2011) 407–418.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 3352
Biology as reactivity
J. Fisher, D. Harel, T.A. Henzinger, Communications of the ACM 54 (2011) 72–82.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 3369
The multiple faces of RIM
A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 3371   OA
Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3364   OA
Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3357
The complexity of request-response games
K. Chatterjee, T.A. Henzinger, F. Horn, in:, A.-H. Dediu, S. Inenaga, C. Martín-Vide (Eds.), Springer, 2011, pp. 227–237.
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2011 | Journal Article | IST-REx-ID: 3376   OA
Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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2011 | Journal Article | IST-REx-ID: 3965
Computing elevation maxima by searching the Gauss sphere
B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics 16 (2011) 1–13.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 491
Setting the clock for recirculating lymphocytes
A. Eichner, M.K. Sixt, Science Signaling 4 (2011).
View | DOI
 

2011 | Journal Article | IST-REx-ID: 504   OA
Erratum: Species' range: Adaptation in space and time (American Naturalist 174 (E186 E204))
J. Polechova, N.H. Barton, G. Marion, American Naturalist 177 (2011) 546–547.
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2011 | Conference Paper | IST-REx-ID: 3345
Energy and mean-payoff parity Markov Decision Processes
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
View | Files available | DOI | Download (ext.) | arXiv
 

2011 | Technical Report | IST-REx-ID: 5384   OA
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
View | Files available | DOI
 

2011 | Preprint | IST-REx-ID: 3338
Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
View | Files available | Download (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3264
Solving recursion-free Horn clauses over LI+UIF
A. Gupta, C. Popeea, A. Rybalchenko, in:, H. Yang (Ed.), Springer, 2011, pp. 188–203.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 3269
Perceptual global illumination cancellation in complex projection environments
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
View | DOI
 

2011 | Book Chapter | IST-REx-ID: 3271
Efficient computation of persistent homology for cubical data
H. Wagner, C. Chen, E. Vuçini, in:, R. Peikert, H. Hauser, H. Carr, R. Fuchs (Eds.), Topological Methods in Data Analysis and Visualization II, Springer, 2011, pp. 91–106.
View | DOI
 

2011 | Journal Article | IST-REx-ID: 3288   OA
Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3290   OA
A general method for calculating likelihoods under the coalescent process
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
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2011 | Preprint | IST-REx-ID: 3339   OA View | Download (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3163
Maximum margin multi-label structured prediction
C. Lampert, in:, Neural Information Processing Systems, 2011.
View | Files available
 

2011 | Journal Article | IST-REx-ID: 3315   OA
Timed parity games: Complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
View | Files available | DOI
 

2011 | Conference Poster | IST-REx-ID: 3322
Maximum margin multi label structured prediction
C. Lampert, Maximum Margin Multi Label Structured Prediction, Neural Information Processing Systems, 2011.
View | Files available
 

2011 | Journal Article | IST-REx-ID: 3334
Letter from the new editors-in-chief
H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
View | DOI
 

2011 | Conference Paper | IST-REx-ID: 3346   OA
Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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