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38 Publications


2021 | Journal Article | IST-REx-ID: 9255 | OA
Semi-device-independent random number generation with flexible assumptions
M. Pivoluska, M. Plesch, M. Farkas, N. Ruzickova, C. Flegel, N.H. Valencia, W. Mccutcheon, M. Malik, E.A. Aguilar, Npj Quantum Information 7 (2021).
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2021 | Journal Article | IST-REx-ID: 9910 | OA
The limits of normal approximation for adult height
S.A. Slavskii, I.A. Kuznetsov, T.I. Shashkova, G.A. Bazykin, T.I. Axenovich, F. Kondrashov, Y.S. Aulchenko, European Journal of Human Genetics 29 (2021) 1082–1091.
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2021 | Journal Article | IST-REx-ID: 9905 | OA
Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains
S. Rella, Y.A. Kulikova, E.T. Dermitzakis, F. Kondrashov, Scientific Reports 11 (2021).
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2020 | Journal Article | IST-REx-ID: 8320
Expanding the genetic code: Unnatural base pairs in biological systems
S.A. Mukba, P. Vlasov, P.M. Kolosov, E.Y. Shuvalova, T.V. Egorova, E.Z. Alkalaeva, Molecular Biology 54 (2020) 475–484.
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2020 | Journal Article | IST-REx-ID: 8321
Expanding the genetic code: Unnatural base pairs in biological systems
S.A. Mukba, P. Vlasov, P.M. Kolosov, E.Y. Shuvalova, T.V. Egorova, E.Z. Alkalaeva, Molekuliarnaia biologiia 54 (2020) 531–541.
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2020 | Journal Article | IST-REx-ID: 8645 | OA
HypercubeME: Two hundred million combinatorially complete datasets from a single experiment
L.A. Esteban, L.R. Lonishin, D.M. Bobrovskiy, G. Leleytner, N.S. Bogatyreva, F. Kondrashov, D.N. Ivankov, Bioinformatics 36 (2020) 1960–1962.
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2020 | Journal Article | IST-REx-ID: 8700
The influence of A/G composition of 3' stop codon contexts on translation termination efficiency in eukaryotes
E.E. Sokolova, P. Vlasov, T.V. Egorova, A.V. Shuvalov, E.Z. Alkalaeva, Molecular Biology 54 (2020) 739–748.
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2020 | Journal Article | IST-REx-ID: 8701
The influence of A/G composition of 3' stop codon contexts on translation termination efficiency in eukaryotes
E.E. Sokolova, P. Vlasov, T.V. Egorova, A.V. Shuvalov, E.Z. Alkalaeva, Molekuliarnaia biologiia 54 (2020) 837–848.
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2020 | Journal Article | IST-REx-ID: 8707
CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
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2020 | Journal Article | IST-REx-ID: 7931 | OA
A method for identification of the methylation level of CpG islands from NGS data
L.A. Uroshlev, E.T. Abdullaev, I.R. Umarova, I.A. Il’Icheva, L.A. Panchenko, R.V. Polozov, F. Kondrashov, Y.D. Nechipurenko, S.L. Grokhovsky, Scientific Reports 10 (2020).
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2020 | Journal Article | IST-REx-ID: 7889 | OA
Plants with genetically encoded autoluminescence
Mitiouchkina T, Mishin AS, Gonzalez Somermeyer L, Markina NM, Chepurnyh TV, Guglya EB, Karataeva TA, Palkina KA, Shakhova ES, Fakhranurova LI, Chekova SV, Tsarkova AS, Golubev YV, Negrebetsky VV, Dolgushin SA, Shalaev PV, Shlykov D, Melnik OA, Shipunova VO, Deyev SM, Bubyrev AI, Pushin AS, Choob VV, Dolgov SV, Kondrashov F, Yampolsky IV, Sarkisyan KS. 2020. Plants with genetically encoded autoluminescence. Nature Biotechnology. 38, 944–946.
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2019 | Journal Article | IST-REx-ID: 7181 | OA
Large multiple sequence alignments with a root-to-leaf regressive method
E. Garriga, P. Di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H. Laayouni, F. Kondrashov, E. Floden, C. Notredame, Nature Biotechnology 37 (2019) 1466–1470.
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2019 | Journal Article | IST-REx-ID: 6506 | OA
Chance and pleiotropy dominate genetic diversity in complex bacterial environments
L. Noda-García, D. Davidi, E. Korenblum, A. Elazar, E. Putintseva, A. Aharoni, D.S. Tawfik, Nature Microbiology 4 (2019) 1221–1230.
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2019 | Research Data Reference | IST-REx-ID: 9789
Multiple alignment of His3 orthologues
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9790
A statistical summary of segment libraries and sequencing results
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
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2019 | Journal Article | IST-REx-ID: 6419 | OA
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).
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2019 | Research Data Reference | IST-REx-ID: 9797
A statistical summary of segment libraries and sequencing results
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9731
Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O. Sigalova, A. Chaplin, O. Bochkareva, P. Shelyakin, V. Filaretov, E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9783
Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9890
Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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