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45 Publications


2021 | Journal Article | IST-REx-ID: 9877 | OA
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
J.A. Rodrigues, P.-H. Hsieh, D. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, X. Ye, N.D. Nguyen, S. Nijjar, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 118 (2021).
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2020 | Journal Article | IST-REx-ID: 9526 | OA
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
J. Choi, D.B. Lyons, M.Y. Kim, J.D. Moore, D. ZILBERMAN, Molecular Cell 77 (2020) 310–323.e7.
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2019 | Journal Article | IST-REx-ID: 9460 | OA
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. ZILBERMAN, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.
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2019 | Journal Article | IST-REx-ID: 9530 | OA
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. ZILBERMAN, A. Zemach, Epigenetics and Chromatin 12 (2019).
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2018 | Journal Article | IST-REx-ID: 9471 | OA
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis
J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.
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2017 | Journal Article | IST-REx-ID: 9445 | OA View | Files available | DOI | PubMed | Europe PMC
 

2017 | Journal Article | IST-REx-ID: 9506 | OA View | Files available | DOI | PubMed | Europe PMC
 

2016 | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. ZILBERMAN, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
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2016 | Journal Article | IST-REx-ID: 9456 | OA
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. ZILBERMAN, S.W. Roy, Nature 538 (2016) 533–536.
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2016 | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
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2016 | Journal Article | IST-REx-ID: 9474 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
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2015 | Journal Article | IST-REx-ID: 9532 | OA
Evolution and function of genomic imprinting in plants
J.A. Rodrigues, D. ZILBERMAN, Genes and Development 29 (2015) 2517–2531.
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2014 | Journal Article | IST-REx-ID: 9458 | OA View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 9479 | OA
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. ZILBERMAN, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
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2014 | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. ZILBERMAN, Trends in Plant Science 19 (2014) 320–326.
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2013 | Journal Article | IST-REx-ID: 9459 | OA
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
A. Zemach, M.Y. Kim, P.-H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. ZILBERMAN, Cell 153 (2013) 193–205.
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2013 | Journal Article | IST-REx-ID: 9481 | OA
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
J.A. Rodrigues, R. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 110 (2013) 7934–7939.
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2013 | Journal Article | IST-REx-ID: 9520 | OA
A conversation across generations: Soma-germ cell crosstalk in plants
X. Feng, D. ZILBERMAN, H. Dickinson, Developmental Cell 24 (2013) 215–225.
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2012 | Journal Article | IST-REx-ID: 9451 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. ZILBERMAN, Science 337 (2012) 1360–1364.
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2012 | Journal Article | IST-REx-ID: 9497 | OA
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. ZILBERMAN, PLoS Genetics 8 (2012).
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