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38 Publications


2022 | Journal Article | IST-REx-ID: 12261 | OA
A. Angermayr, T. Y. Pang, G. Chevereau, K. Mitosch, M. J. Lercher, and M. T. Bollenbach, “Growth‐mediated negative feedback shapes quantitative antibiotic response,” Molecular Systems Biology, vol. 18, no. 9. Embo Press, 2022.
[Published Version] View | Files available | DOI | WoS
 

2019 | Journal Article | IST-REx-ID: 7026 | OA
M. Lukacisin and M. T. Bollenbach, “Emergent gene expression responses to drug combinations predict higher-order drug interactions,” Cell Systems, vol. 9, no. 5. Cell Press, pp. 423-433.e1-e3, 2019.
[Published Version] View | Files available | DOI | WoS
 

2019 | Thesis | IST-REx-ID: 6392 | OA
M. Lukacisin, “Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory,” IST Austria, 2019.
[Published Version] View | Files available | DOI
 

2018 | Thesis | IST-REx-ID: 6263 | OA
M. Lukacisinova, “Genetic determinants of antibiotic resistance evolution,” Institute of Science and Technology Austria, 2018.
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 520
W. Du et al., “Nonhierarchical flux regulation exposes the fitness burden associated with lactate production in Synechocystis sp. PCC6803,” ACS Synthetic Biology, vol. 6, no. 3. American Chemical Society, pp. 395–401, 2017.
View | DOI | PubMed | Europe PMC
 

2017 | Research Data Reference | IST-REx-ID: 9849
M. Lukacisinova, S. Novak, and T. Paixao, “Modelling and simulation details.” Public Library of Science, 2017.
[Published Version] View | Files available | DOI
 

2017 | Research Data Reference | IST-REx-ID: 9850
M. Lukacisinova, S. Novak, and T. Paixao, “Extensions of the model.” Public Library of Science, 2017.
[Published Version] View | Files available | DOI
 

2017 | Research Data Reference | IST-REx-ID: 9851
M. Lukacisinova, S. Novak, and T. Paixao, “Heuristic prediction for multiple stresses.” Public Library of Science, 2017.
[Published Version] View | Files available | DOI
 

2017 | Research Data Reference | IST-REx-ID: 9852
M. Lukacisinova, S. Novak, and T. Paixao, “Resistance frequencies for different combination strategies.” Public Library of Science, 2017.
[Published Version] View | Files available | DOI
 

2017 | Thesis | IST-REx-ID: 818 | OA
K. Mitosch, “Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics,” Institute of Science and Technology Austria, 2017.
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 666 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment,” Cell Systems, vol. 4, no. 4. Cell Press, pp. 393–403, 2017.
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 822 | OA
M. de Vos, M. P. Zagórski, A. Mcnally, and M. T. Bollenbach, “Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections,” PNAS, vol. 114, no. 40. National Academy of Sciences, pp. 10666–10671, 2017.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 

2017 | Research Data | IST-REx-ID: 5563 | OA
M. Lukacisin, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2017.
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 1029 | OA
M. Lukacisin, M. Landon, and R. Jajoo, “Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast,” PLoS One, vol. 12, no. 3. Public Library of Science, 2017.
[Published Version] View | Files available | DOI | WoS
 

2017 | Journal Article | IST-REx-ID: 696 | OA
M. Lukacisinova, S. Novak, and T. Paixao, “Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes,” PLoS Computational Biology, vol. 13, no. 7. Public Library of Science, 2017.
[Published Version] View | Files available | DOI
 

2017 | Journal Article | IST-REx-ID: 1027 | OA
M. Lukacisinova and M. T. Bollenbach, “Toward a quantitative understanding of antibiotic resistance evolution,” Current Opinion in Biotechnology, vol. 46. Elsevier, pp. 90–97, 2017.
[Published Version] View | Files available | DOI | WoS
 

2016 | Journal Article | IST-REx-ID: 1154 | OA
J. Schwarz et al., “A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients,” Scientific Reports, vol. 6. Nature Publishing Group, 2016.
[Published Version] View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1218 | OA
A. Angermayr et al., “Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs,” Applied and Environmental Microbiology, vol. 82, no. 14. American Society for Microbiology, pp. 4180–4189, 2016.
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2016 | Journal Article | IST-REx-ID: 1552 | OA
Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, and R. C. Maclean, “The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 283, no. 1822. Royal Society, The, 2016.
[Published Version] View | Files available | DOI
 

2016 | Research Data | IST-REx-ID: 5556 | OA
M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1571
M. de Vos, A. Dawid, V. Šunderlíková, and S. Tans, “Breaking evolutionary constraint with a tradeoff ratchet,” PNAS, vol. 112, no. 48. National Academy of Sciences, pp. 14906–14911, 2015.
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2015 | Journal Article | IST-REx-ID: 1581
M. T. Bollenbach and C.-P. J. Heisenberg, “Gradients are shaping up,” Cell, vol. 161, no. 3. Cell Press, pp. 431–432, 2015.
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2015 | Journal Article | IST-REx-ID: 1586
A. Angermayr, A. Gorchs, and K. Hellingwerf, “Metabolic engineering of cyanobacteria for the synthesis of commodity products,” Trends in Biotechnology, vol. 33, no. 6. Elsevier, pp. 352–361, 2015.
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2015 | Journal Article | IST-REx-ID: 1623 | OA
P. Hammar et al., “Single-cell screening of photosynthetic growth and lactate production by cyanobacteria,” Biotechnology for Biofuels, vol. 8, no. 1. BioMed Central, 2015.
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1810 | OA
M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution,” Current Opinion in Microbiology, vol. 27. Elsevier, pp. 1–9, 2015.
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1823 | OA
G. Chevereau and M. T. Bollenbach, “Systematic discovery of drug interaction mechanisms,” Molecular Systems Biology, vol. 11, no. 4. Nature Publishing Group, 2015.
[Published Version] View | Files available | DOI
 

2015 | Research Data Reference | IST-REx-ID: 9711
G. Chevereau et al., “Excel file containing the raw data for all figures.” Public Library of Science, 2015.
[Published Version] View | Files available | DOI
 

2015 | Research Data Reference | IST-REx-ID: 9765
G. Chevereau et al., “Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs.” Public Library of Science, 2015.
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1509 | OA
J. Michalko, M. Lukacisinova, M. T. Bollenbach, and J. Friml, “Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene,” F1000 Research , vol. 4. F1000 Research, 2015.
[Published Version] View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1619 | OA
G. Chevereau et al., “Quantifying the determinants of evolutionary dynamics leading to drug resistance,” PLoS Biology, vol. 13, no. 11. Public Library of Science, 2015.
[Published Version] View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 2040 | OA
A. Kicheva et al., “Coordination of progenitor specification and growth in mouse and chick spinal cord,” Science, vol. 345, no. 6204. American Association for the Advancement of Science, 2014.
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2014 | Journal Article | IST-REx-ID: 2220 | OA
M. de Vos and M. T. Bollenbach, “Suppressive drug interactions between antifungals,” Chemistry and Biology, vol. 21, no. 4. Cell Press, pp. 439–440, 2014.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 2001
K. Mitosch and M. T. Bollenbach, “Bacterial responses to antibiotics and their combinations,” Environmental Microbiology Reports, vol. 6, no. 6. Wiley, pp. 545–557, 2014.
View | Files available | DOI
 

2013 | Journal Article | IST-REx-ID: 2810 | OA
M. de Vos, F. Poelwijk, N. Battich, J. Ndika, and S. Tans, “Environmental dependence of genetic constraint,” PLoS Genetics, vol. 9, no. 6. Public Library of Science, 2013.
[Published Version] View | Files available | DOI
 

2012 | Journal Article | IST-REx-ID: 2970
A. Kicheva, M. T. Bollenbach, O. Wartlick, F. Julicher, and M. Gonzalez Gaitan, “Investigating the principles of morphogen gradient formation: from tissues to cells,” Current Opinion in Genetics & Development, vol. 22, no. 6. Elsevier, pp. 527–532, 2012.
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2012 | Journal Article | IST-REx-ID: 3160
P. Pantazis and M. T. Bollenbach, “Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo,” Cell Cycle, vol. 11, no. 11. Taylor and Francis, pp. 2055–2058, 2012.
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2011 | Journal Article | IST-REx-ID: 3429
N. Plachta, M. T. Bollenbach, S. Pease, S. Fraser, and P. Pantazis, “Oct4 kinetics predict cell lineage patterning in the early mammalian embryo,” Nature Cell Biology, vol. 13, no. 2. Nature Publishing Group, pp. 117–123, 2011.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
M. T. Bollenbach and R. Kishony, “Resolution of gene regulatory conflicts caused by combinations of antibiotics,” Molecular Cell, vol. 42, no. 4. Cell Press, pp. 413–425, 2011.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 

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