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30 Publications


2019 | Thesis | IST-REx-ID: 6392 | OA
Lukacisin, Martin. Quantitative Investigation of Gene Expression Principles through Combinatorial Drug Perturbation and Theory. IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:6392.
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2019 | Journal Article | IST-REx-ID: 7026 | OA
Lukacisin, Martin, and Mark Tobias Bollenbach. “Emergent Gene Expression Responses to Drug Combinations Predict Higher-Order Drug Interactions.” Cell Systems 9, no. 5 (2019): 423-433.e1-e3. https://doi.org/10.1016/j.cels.2019.10.004.
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2018 | Thesis | IST-REx-ID: 6263 | OA
Lukacisinova, Marta. Genetic Determinants of Antibiotic Resistance Evolution. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:th1072.
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2017 | Journal Article | IST-REx-ID: 520
Du, Wei, Andreas Angermayr, Joeri Jongbloets, Douwe Molenaar, Herwig Bachmann, Klaas Hellingwerf, and Filipe Branco Dos Santos. “Nonhierarchical Flux Regulation Exposes the Fitness Burden Associated with Lactate Production in Synechocystis Sp. PCC6803.” ACS Synthetic Biology 6, no. 3 (2017): 395–401. https://doi.org/10.1021/acssynbio.6b00235.
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2017 | Research Data | IST-REx-ID: 5563 | OA
Lukacisin, Martin. MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:64.
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2017 | Journal Article | IST-REx-ID: 666 | OA
Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Noisy Response to Antibiotic Stress Predicts Subsequent Single Cell Survival in an Acidic Environment.” Cell Systems 4, no. 4 (2017): 393–403. https://doi.org/10.1016/j.cels.2017.03.001.
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2017 | Journal Article | IST-REx-ID: 696 | OA
Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Stress Induced Mutagenesis: Stress Diversity Facilitates the Persistence of Mutator Genes.” PLoS Computational Biology 13, no. 7 (2017). https://doi.org/10.1371/journal.pcbi.1005609.
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2017 | Thesis | IST-REx-ID: 818 | OA
Mitosch, Karin. Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:th_862.
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2017 | Journal Article | IST-REx-ID: 822 | OA
De Vos, Marjon, Marcin P Zagórski, Alan Mcnally, and Mark Tobias Bollenbach. “Interaction Networks, Ecological Stability, and Collective Antibiotic Tolerance in Polymicrobial Infections.” PNAS 114, no. 40 (2017): 10666–71. https://doi.org/10.1073/pnas.1713372114.
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2017 | Journal Article | IST-REx-ID: 1027 | OA
Lukacisinova, Marta, and Mark Tobias Bollenbach. “Toward a Quantitative Understanding of Antibiotic Resistance Evolution.” Current Opinion in Biotechnology 46 (2017): 90–97. https://doi.org/10.1016/j.copbio.2017.02.013.
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2017 | Journal Article | IST-REx-ID: 1029 | OA
Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” PLoS One 12, no. 3 (2017). https://doi.org/10.1371/journal.pone.0174066.
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2016 | Journal Article | IST-REx-ID: 1552 | OA
Qi, Qin, Macarena Toll Riera, Karl Heilbron, Gail Preston, and R Craig Maclean. “The Genomic Basis of Adaptation to the Fitness Cost of Rifampicin Resistance in Pseudomonas Aeruginosa.” Proceedings of the Royal Society of London Series B Biological Sciences 283, no. 1822 (2016). https://doi.org/10.1098/rspb.2015.2452.
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2016 | Journal Article | IST-REx-ID: 1218 | OA
Angermayr, Andreas, Pascal Van Alphen, Dicle Hasdemir, Gertjan Kramer, Muzamal Iqbal, Wilmar Van Grondelle, Huub Hoefsloot, Younghae Choi, and Klaas Hellingwerf. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.” Applied and Environmental Microbiology 82, no. 14 (2016): 4180–89. https://doi.org/10.1128/AEM.00256-16.
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2016 | Journal Article | IST-REx-ID: 1154 | OA
Schwarz, Jan, Veronika Bierbaum, Jack Merrin, Tino Frank, Robert Hauschild, Mark Tobias Bollenbach, Savaş Tay, Michael K Sixt, and Matthias Mehling. “A Microfluidic Device for Measuring Cell Migration towards Substrate Bound and Soluble Chemokine Gradients.” Scientific Reports 6 (2016). https://doi.org/10.1038/srep36440.
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2016 | Research Data | IST-REx-ID: 5556 | OA
Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” IST Austria, 2016. https://doi.org/10.15479/AT:ISTA:45.
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2015 | Journal Article | IST-REx-ID: 1571
De Vos, Marjon, Alexandre Dawid, Vanda Šunderlíková, and Sander Tans. “Breaking Evolutionary Constraint with a Tradeoff Ratchet.” PNAS 112, no. 48 (2015): 14906–11. https://doi.org/10.1073/pnas.1510282112.
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2015 | Journal Article | IST-REx-ID: 1586
Angermayr, Andreas, Aleix Gorchs, and Klaas Hellingwerf. “Metabolic Engineering of Cyanobacteria for the Synthesis of Commodity Products.” Trends in Biotechnology 33, no. 6 (2015): 352–61. https://doi.org/10.1016/j.tibtech.2015.03.009.
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2015 | Journal Article | IST-REx-ID: 1619 | OA
Chevereau, Guillaume, Marta Lukacisinova, Tugce Batur, Aysegul Guvenek, Dilay Ayhan, Erdal Toprak, and Mark Tobias Bollenbach. “Quantifying the Determinants of Evolutionary Dynamics Leading to Drug Resistance.” PLoS Biology 13, no. 11 (2015). https://doi.org/10.1371/journal.pbio.1002299.
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2015 | Journal Article | IST-REx-ID: 1623 | OA
Hammar, Petter, Andreas Angermayr, Staffan Sjostrom, Josefin Van Der Meer, Klaas Hellingwerf, Elton Hudson, and Hakaan Joensson. “Single-Cell Screening of Photosynthetic Growth and Lactate Production by Cyanobacteria.” Biotechnology for Biofuels 8, no. 1 (2015). https://doi.org/10.1186/s13068-015-0380-2.
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2015 | Journal Article | IST-REx-ID: 1810 | OA
Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications for Drug Discovery and Resistance Evolution.” Current Opinion in Microbiology 27 (2015): 1–9. https://doi.org/10.1016/j.mib.2015.05.008.
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2015 | Journal Article | IST-REx-ID: 1823 | OA
Chevereau, Guillaume, and Mark Tobias Bollenbach. “Systematic Discovery of Drug Interaction Mechanisms.” Molecular Systems Biology 11, no. 4 (2015). https://doi.org/10.15252/msb.20156098.
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2015 | Journal Article | IST-REx-ID: 1509 | OA
Michalko, Jaroslav, Marta Lukacisinova, Mark Tobias Bollenbach, and Jiří Friml. “Embryo-Lethal Phenotypes in Early Abp1 Mutants Are Due to Disruption of the Neighboring BSM Gene.” F1000 Research 4 (2015). https://doi.org/10.12688/f1000research.7143.1.
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2014 | Journal Article | IST-REx-ID: 2001
Mitosch, Karin, and Tobias Bollenbach. “Bacterial Responses to Antibiotics and Their Combinations.” Environmental Microbiology Reports 6, no. 6 (2014): 545–57. https://doi.org/10.1111/1758-2229.12190.
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2014 | Journal Article | IST-REx-ID: 2040 | OA
Kicheva, Anna, Mark Tobias Bollenbach, Ana Ribeiro, Helena Pérez Valle, Robin Lovell Badge, Vasso Episkopou, and James Briscoe. “Coordination of Progenitor Specification and Growth in Mouse and Chick Spinal Cord.” Science 345, no. 6204 (2014). https://doi.org/10.1126/science.1254927.
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2014 | Journal Article | IST-REx-ID: 2220 | OA
De Vos, Marjon, and Mark Tobias Bollenbach. “Suppressive Drug Interactions between Antifungals.” Chemistry and Biology 21, no. 4 (2014): 439–40. https://doi.org/10.1016/j.chembiol.2014.04.004.
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2013 | Journal Article | IST-REx-ID: 2810 | OA
Vos, Marjon de, Frank Poelwijk, Nico Battich, Joseph Ndika, and Sander Tans. “Environmental Dependence of Genetic Constraint.” PLoS Genetics 9, no. 6 (2013). https://doi.org/10.1371/journal.pgen.1003580.
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2012 | Journal Article | IST-REx-ID: 2970
Kicheva, Anna, Mark Tobias Bollenbach, Ortrud Wartlick, Frank Julicher, and Marcos Gonzalez Gaitan. “Investigating the Principles of Morphogen Gradient Formation: From Tissues to Cells.” Current Opinion in Genetics & Development 22, no. 6 (2012): 527–32. https://doi.org/10.1016/j.gde.2012.08.004.
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2012 | Journal Article | IST-REx-ID: 3160
Pantazis, Periklis, and Tobias Bollenbach. “Transcription Factor Kinetics and the Emerging Asymmetry in the Early Mammalian Embryo.” Cell Cycle 11, no. 11 (2012): 2055–58. https://doi.org/10.4161/cc.20118.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach, Mark Tobias, and Roy Kishony. “Resolution of Gene Regulatory Conflicts Caused by Combinations of Antibiotics.” Molecular Cell 42, no. 4 (2011): 413–25. https://doi.org/10.1016/j.molcel.2011.04.016.
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2011 | Journal Article | IST-REx-ID: 3429
Plachta, Nicolas, Mark Tobias Bollenbach, Shirley Pease, Scott Fraser, and Periklis Pantazis. “Oct4 Kinetics Predict Cell Lineage Patterning in the Early Mammalian Embryo.” Nature Cell Biology 13, no. 2 (2011): 117–23. https://doi.org/10.1038/ncb2154.
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