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50 Publications


2021 | Journal Article | IST-REx-ID: 8708 | OA
How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels
A. Simon, C. Fraisse, T. El Ayari, C. Liautard‐Haag, P. Strelkov, J.J. Welch, N. Bierne, Journal of Evolutionary Biology 34 (2021) 208–223.
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2021 | Journal Article | IST-REx-ID: 9908 | OA View | Files available | DOI
 
 

2020 | Journal Article | IST-REx-ID: 8099 | OA
Disagreement in FST estimators: A case study from sex chromosomes
W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
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2020 | Research Data Reference | IST-REx-ID: 9799 View | Files available | DOI
 

2020 | Research Data Reference | IST-REx-ID: 9798 View | Files available | DOI
 

2019 | Journal Article | IST-REx-ID: 7146
Molecular and evolutionary dynamics of animal sex-chromosome turnover
B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
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2019 | Journal Article | IST-REx-ID: 7400 | OA
Early sex-chromosome evolution in the diploid dioecious plant Mercurialis annua
P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
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2019 | Journal Article | IST-REx-ID: 7421
A reciprocal translocation radically reshapes sex‐linked inheritance in the common frog
M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
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2019 | Journal Article | IST-REx-ID: 6089 | OA
Pleiotropy modulates the efficacy of selection in drosophila melanogaster
C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.
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2019 | Journal Article | IST-REx-ID: 6418 | OA
Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
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2019 | Journal Article | IST-REx-ID: 6621 | OA
On the power to detect rare recombination events
A.E. Wright, I. Darolti, N.I. Bloch, V. Oostra, B.A. Sandkam, S.D. Buechel, N. Kolm, F. Breden, B. Vicoso, J.E. Mank, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 12607–12608.
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2019 | Journal Article | IST-REx-ID: 6658 | OA
Haploid selection drives new gene male germline expression
J. Raices, P. Otto, M. Vibranovski, Genome Research 29 (2019) 1115–1122.
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2019 | Journal Article | IST-REx-ID: 6710 | OA
Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
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2019 | Journal Article | IST-REx-ID: 6755 | OA
Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome
M.A.L. Picard, B. Vicoso, D. Roquis, I. Bulla, R.C. Augusto, N. Arancibia, C. Grunau, J. Boissier, C. Cosseau, Genome Biology and Evolution 11 (2019) 1909–1922.
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2019 | Journal Article | IST-REx-ID: 6821 | OA
Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses
M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
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2019 | Journal Article | IST-REx-ID: 6983 | OA
Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
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2019 | Journal Article | IST-REx-ID: 6831 | OA
Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
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2019 | Research Data Reference | IST-REx-ID: 9803 View | Files available | DOI
 

2019 | Journal Article | IST-REx-ID: 6467 | OA
The distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
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2018 | Journal Article | IST-REx-ID: 190 | OA
Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest
M. Harrison, N. Arning, L. Kremer, G. Ylla, X. Belles, E. Bornberg Bauer, A.K. Huylmans, E. Jongepier, M. Puilachs, S. Richards, C. Schal, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 330 (2018) 254–264.
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2018 | Journal Article | IST-REx-ID: 199 | OA
Tissue specificity and dynamics of sex biased gene expression in a common frog population with differentiated, yet homomorphic, sex chromosomes
W. Ma, P. Veltsos, M.A. Toups, N. Rodrigues, R. Sermier, D. Jeffries, N. Perrin, Genes 9 (2018).
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2018 | Journal Article | IST-REx-ID: 542 | OA
Complex history and differentiation patterns of the t-haplotype, a mouse meiotic driver
R.K. Kelemen, B. Vicoso, Genetics 208 (2018) 365–375.
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2018 | Journal Article | IST-REx-ID: 5989 | OA
Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites
J. Kincaid-Smith, M.A.L. Picard, C. Cosseau, J. Boissier, D. Severac, C. Grunau, E. Toulza, Genome Biology and Evolution 10 (2018) 840–856.
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2018 | Journal Article | IST-REx-ID: 63 | OA
Unusual diversity of sex chromosomes in African cichlid fishes
W.J. Gammerdinger, T. Kocher, Genes 9 (2018).
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2018 | Journal Article | IST-REx-ID: 139 | OA View | Files available | DOI
 

2018 | Journal Article | IST-REx-ID: 131 | OA
Evolution of gene dosage on the Z-chromosome of schistosome parasites
M.A.L. Picard, C. Cosseau, S. Ferré, T. Quack, C. Grevelding, Y. Couté, B. Vicoso, ELife 7 (2018).
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2018 | Journal Article | IST-REx-ID: 448 | OA
Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
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2018 | Research Data Reference | IST-REx-ID: 9841
Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, Huylmans AK, Kemena C, Kremer LPM, Lee SL, Lopez-Ezquerra A, Mallet L, Monroy-Kuhn JM, Moser A, Murali SC, Muzny DM, Otani S, Piulachs M-D, Poelchau M, Qu J, Schaub F, Wada-Katsumata A, Worley KC, Xie Q, Ylla G, Poulsen M, Gibbs RA, Schal C, Richards S, Belles X, Korb J, Bornberg-Bauer E. 2018. Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality, Dryad, 10.5061/dryad.51d4r.
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2018 | Journal Article | IST-REx-ID: 9917 | OA
Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow
A.M. Westram, M. Rafajlović, P. Chaube, R. Faria, T. Larsson, M. Panova, M. Ravinet, A. Blomberg, B. Mehlig, K. Johannesson, R. Butlin, Evolution Letters 2 (2018) 297–309.
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2018 | Journal Article | IST-REx-ID: 9915 | OA
Are assortative mating and genital divergence driven by reinforcement?
J. Hollander, M. Montaño-Rendón, G. Bianco, X. Yang, A.M. Westram, L. Duvaux, D.G. Reid, R.K. Butlin, Evolution Letters 2 (2018) 557–566.
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2018 | Research Data Reference | IST-REx-ID: 9930
Data from: Clines on the seashore: the genomic architecture underlying rapid divergence in the face of gene flow
A.M. Westram, M. Rafajlović, P. Chaube, R. Faria, T. Larsson, M. Panova, M. Ravinet, A. Blomberg, B. Mehlig, K. Johannesson, R. Butlin, (2018).
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2018 | Research Data Reference | IST-REx-ID: 9929
Data from: Are assortative mating and genital divergence driven by reinforcement?
J. Hollander, M. Montaño-Rendón, G. Bianco, X. Yang, A.M. Westram, L. Duvaux, D.G. Reid, R.K. Butlin, (2018).
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2017 | Journal Article | IST-REx-ID: 614 | OA
The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W
C. Fraisse, M.A.L. Picard, B. Vicoso, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 1085 | OA
Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation
A. Wright, I. Darolti, N. Bloch, V. Oostra, B. Sandkam, S. Buechel, N. Kolm, F. Breden, B. Vicoso, J. Mank, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 945 | OA
Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome
A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
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2017 | Journal Article | IST-REx-ID: 1019
X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster
E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, Heredity 119 (2017) 27–34.
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2017 | Research Data Reference | IST-REx-ID: 9861 View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1329 | OA
De novo transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia galeata
A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology and Evolution 8 (2016) 3120–3139.
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2016 | Journal Article | IST-REx-ID: 1158 | OA
Shedding light on the grey zone of speciation along a continuum of genomic divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, PLoS Biology 14 (2016).
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2016 | Research Data Reference | IST-REx-ID: 9862
Simulation study to test the robustness of ABC in face of recent times of divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9863
Accessions of surveyed individuals, geographic locations and summary statistics
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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2015 | Journal Article | IST-REx-ID: 1513 | OA
The X chromosome of hemipteran insects: Conservation, dosage compensation and sex-biased expression
A. Pal, B. Vicoso, Genome Biology and Evolution 7 (2015) 3259–3268.
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2015 | Journal Article | IST-REx-ID: 1577 | OA
Birth of a new gene on the Y chromosome of Drosophila melanogaster
A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
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