---
res:
bibo_abstract:
- "Supporting material to the article \r\nSTATISTICAL MECHANICS FOR METABOLIC NETWORKS
IN STEADY-STATE GROWTH\r\n\r\nboundscoli.dat\r\nFlux Bounds of the E. coli catabolic
core model iAF1260 in a glucose limited minimal medium. \r\n\r\npolcoli.dat\r\nMatrix
enconding the polytope of the E. coli catabolic core model iAF1260 in a glucose
limited minimal medium, \r\nobtained from the soichiometric matrix by standard
linear algebra (reduced row echelon form).\r\n\r\nellis.dat\r\nApproximate Lowner-John
ellipsoid rounding the polytope of the E. coli catabolic core model iAF1260 in
a glucose limited minimal medium\r\nobtained with the Lovasz method.\r\n\r\npoint0.dat\r\nCenter
of the approximate Lowner-John ellipsoid rounding the polytope of the E. coli
catabolic core model iAF1260 in a glucose limited minimal medium\r\nobtained with
the Lovasz method.\r\n\r\nlovasz.cpp \r\nThis c++ code file receives in input
the polytope of the feasible steady states of a metabolic network, \r\n(matrix
and bounds), and it gives in output an approximate Lowner-John ellipsoid rounding
the polytope\r\nwith the Lovasz method \r\nNB inputs are referred by defaults
to the catabolic core of the E.Coli network iAF1260. \r\nFor further details we
refer to PLoS ONE 10.4 e0122670 (2015).\r\n\r\nsampleHRnew.cpp \r\nThis c++
code file receives in input the polytope of the feasible steady states of a metabolic
network, \r\n(matrix and bounds), the ellipsoid rounding the polytope, a point
inside and \r\nit gives in output a max entropy sampling at fixed average growth
rate \r\nof the steady states by performing an Hit-and-Run Monte Carlo Markov
chain.\r\nNB inputs are referred by defaults to the catabolic core of the E.Coli
network iAF1260. \r\nFor further details we refer to PLoS ONE 10.4 e0122670 (2015).@eng"
bibo_authorlist:
- foaf_Person:
foaf_givenName: Daniele
foaf_name: De Martino, Daniele
foaf_surname: De Martino
foaf_workInfoHomepage: http://www.librecat.org/personId=3FF5848A-F248-11E8-B48F-1D18A9856A87
orcid: 0000-0002-5214-4706
- foaf_Person:
foaf_givenName: Gasper
foaf_name: Tkacik, Gasper
foaf_surname: Tkacik
foaf_workInfoHomepage: http://www.librecat.org/personId=3D494DCA-F248-11E8-B48F-1D18A9856A87
orcid: 0000-0002-6699-1455
bibo_doi: 10.15479/AT:ISTA:62
dct_date: 2018^xs_gYear
dct_publisher: IST Austria@
dct_subject:
- metabolic networks
- e.coli core
- maximum entropy
- monte carlo markov chain sampling
- ellipsoidal rounding
dct_title: Supporting materials "STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN
STEADY-STATE GROWTH"@
...