{"publist_id":"7774","issue":"2","doi":"10.1016/j.cell.2018.06.033","acknowledgement":"In-Data-Review","page":"448 - 464.e24","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pubmed/30007417","open_access":"1"}],"date_updated":"2023-09-19T10:02:47Z","publication":"Cell","_id":"148","volume":174,"publisher":"Cell Press","year":"2018","day":"12","oa":1,"language":[{"iso":"eng"}],"publication_status":"published","external_id":{"pmid":["30007417"],"isi":["000438482800019"]},"author":[{"full_name":"Nishiyama, Tomoaki","last_name":"Nishiyama","first_name":"Tomoaki"},{"first_name":"Hidetoshi","last_name":"Sakayama","full_name":"Sakayama, Hidetoshi"},{"first_name":"Jan","full_name":"De Vries, Jan","last_name":"De Vries"},{"full_name":"Buschmann, Henrik","last_name":"Buschmann","first_name":"Henrik"},{"first_name":"Denis","full_name":"Saint Marcoux, Denis","last_name":"Saint Marcoux"},{"full_name":"Ullrich, Kristian","last_name":"Ullrich","first_name":"Kristian"},{"first_name":"Fabian","full_name":"Haas, Fabian","last_name":"Haas"},{"first_name":"Lisa","last_name":"Vanderstraeten","full_name":"Vanderstraeten, Lisa"},{"last_name":"Becker","full_name":"Becker, Dirk","first_name":"Dirk"},{"first_name":"Daniel","last_name":"Lang","full_name":"Lang, Daniel"},{"full_name":"Vosolsobě, Stanislav","last_name":"Vosolsobě","first_name":"Stanislav"},{"full_name":"Rombauts, Stephane","last_name":"Rombauts","first_name":"Stephane"},{"first_name":"Per","full_name":"Wilhelmsson, Per","last_name":"Wilhelmsson"},{"first_name":"Philipp","full_name":"Janitza, Philipp","last_name":"Janitza"},{"last_name":"Kern","full_name":"Kern, Ramona","first_name":"Ramona"},{"last_name":"Heyl","full_name":"Heyl, Alexander","first_name":"Alexander"},{"first_name":"Florian","last_name":"Rümpler","full_name":"Rümpler, Florian"},{"full_name":"Calderón Villalobos, Luz","last_name":"Calderón Villalobos","first_name":"Luz"},{"last_name":"Clay","full_name":"Clay, John","first_name":"John"},{"last_name":"Skokan","full_name":"Skokan, Roman","first_name":"Roman"},{"full_name":"Toyoda, Atsushi","last_name":"Toyoda","first_name":"Atsushi"},{"first_name":"Yutaka","last_name":"Suzuki","full_name":"Suzuki, Yutaka"},{"last_name":"Kagoshima","full_name":"Kagoshima, Hiroshi","first_name":"Hiroshi"},{"last_name":"Schijlen","full_name":"Schijlen, Elio","first_name":"Elio"},{"full_name":"Tajeshwar, Navindra","last_name":"Tajeshwar","first_name":"Navindra"},{"first_name":"Bruno","full_name":"Catarino, Bruno","last_name":"Catarino"},{"full_name":"Hetherington, Alexander","last_name":"Hetherington","first_name":"Alexander"},{"first_name":"Assia","full_name":"Saltykova, Assia","last_name":"Saltykova"},{"last_name":"Bonnot","full_name":"Bonnot, Clemence","first_name":"Clemence"},{"full_name":"Breuninger, Holger","last_name":"Breuninger","first_name":"Holger"},{"full_name":"Symeonidi, Aikaterini","last_name":"Symeonidi","first_name":"Aikaterini"},{"full_name":"Radhakrishnan, Guru","last_name":"Radhakrishnan","first_name":"Guru"},{"full_name":"Van Nieuwerburgh, Filip","last_name":"Van Nieuwerburgh","first_name":"Filip"},{"first_name":"Dieter","full_name":"Deforce, Dieter","last_name":"Deforce"},{"full_name":"Chang, Caren","last_name":"Chang","first_name":"Caren"},{"first_name":"Kenneth","full_name":"Karol, Kenneth","last_name":"Karol"},{"full_name":"Hedrich, Rainer","last_name":"Hedrich","first_name":"Rainer"},{"full_name":"Ulvskov, Peter","last_name":"Ulvskov","first_name":"Peter"},{"full_name":"Glöckner, Gernot","last_name":"Glöckner","first_name":"Gernot"},{"full_name":"Delwiche, Charles","last_name":"Delwiche","first_name":"Charles"},{"first_name":"Jan","last_name":"Petrášek","full_name":"Petrášek, Jan"},{"first_name":"Yves","last_name":"Van De Peer","full_name":"Van De Peer, Yves"},{"last_name":"Friml","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jirí"},{"last_name":"Beilby","full_name":"Beilby, Mary","first_name":"Mary"},{"full_name":"Dolan, Liam","last_name":"Dolan","first_name":"Liam"},{"full_name":"Kohara, Yuji","last_name":"Kohara","first_name":"Yuji"},{"first_name":"Sumio","last_name":"Sugano","full_name":"Sugano, Sumio"},{"first_name":"Asao","full_name":"Fujiyama, Asao","last_name":"Fujiyama"},{"first_name":"Pierre Marc","last_name":"Delaux","full_name":"Delaux, Pierre Marc"},{"first_name":"Marcel","last_name":"Quint","full_name":"Quint, Marcel"},{"last_name":"Theissen","full_name":"Theissen, Gunter","first_name":"Gunter"},{"first_name":"Martin","last_name":"Hagemann","full_name":"Hagemann, Martin"},{"full_name":"Harholt, Jesper","last_name":"Harholt","first_name":"Jesper"},{"last_name":"Dunand","full_name":"Dunand, Christophe","first_name":"Christophe"},{"last_name":"Zachgo","full_name":"Zachgo, Sabine","first_name":"Sabine"},{"last_name":"Langdale","full_name":"Langdale, Jane","first_name":"Jane"},{"first_name":"Florian","full_name":"Maumus, Florian","last_name":"Maumus"},{"first_name":"Dominique","last_name":"Van Der Straeten","full_name":"Van Der Straeten, Dominique"},{"first_name":"Sven B","last_name":"Gould","full_name":"Gould, Sven B"},{"last_name":"Rensing","full_name":"Rensing, Stefan","first_name":"Stefan"}],"intvolume":"       174","citation":{"chicago":"Nishiyama, Tomoaki, Hidetoshi Sakayama, Jan De Vries, Henrik Buschmann, Denis Saint Marcoux, Kristian Ullrich, Fabian Haas, et al. “The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.” <i>Cell</i>. Cell Press, 2018. <a href=\"https://doi.org/10.1016/j.cell.2018.06.033\">https://doi.org/10.1016/j.cell.2018.06.033</a>.","apa":"Nishiyama, T., Sakayama, H., De Vries, J., Buschmann, H., Saint Marcoux, D., Ullrich, K., … Rensing, S. (2018). The Chara genome: Secondary complexity and implications for plant terrestrialization. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2018.06.033\">https://doi.org/10.1016/j.cell.2018.06.033</a>","mla":"Nishiyama, Tomoaki, et al. “The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.” <i>Cell</i>, vol. 174, no. 2, Cell Press, 2018, p. 448–464.e24, doi:<a href=\"https://doi.org/10.1016/j.cell.2018.06.033\">10.1016/j.cell.2018.06.033</a>.","ieee":"T. Nishiyama <i>et al.</i>, “The Chara genome: Secondary complexity and implications for plant terrestrialization,” <i>Cell</i>, vol. 174, no. 2. Cell Press, p. 448–464.e24, 2018.","ista":"Nishiyama T, Sakayama H, De Vries J, Buschmann H, Saint Marcoux D, Ullrich K, Haas F, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson P, Janitza P, Kern R, Heyl A, Rümpler F, Calderón Villalobos L, Clay J, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington A, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan G, Van Nieuwerburgh F, Deforce D, Chang C, Karol K, Hedrich R, Ulvskov P, Glöckner G, Delwiche C, Petrášek J, Van De Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theissen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing S. 2018. The Chara genome: Secondary complexity and implications for plant terrestrialization. Cell. 174(2), 448–464.e24.","ama":"Nishiyama T, Sakayama H, De Vries J, et al. The Chara genome: Secondary complexity and implications for plant terrestrialization. <i>Cell</i>. 2018;174(2):448-464.e24. doi:<a href=\"https://doi.org/10.1016/j.cell.2018.06.033\">10.1016/j.cell.2018.06.033</a>","short":"T. Nishiyama, H. Sakayama, J. De Vries, H. Buschmann, D. Saint Marcoux, K. Ullrich, F. Haas, L. Vanderstraeten, D. Becker, D. Lang, S. Vosolsobě, S. Rombauts, P. Wilhelmsson, P. Janitza, R. Kern, A. Heyl, F. Rümpler, L. Calderón Villalobos, J. Clay, R. Skokan, A. Toyoda, Y. Suzuki, H. Kagoshima, E. Schijlen, N. Tajeshwar, B. Catarino, A. Hetherington, A. Saltykova, C. Bonnot, H. Breuninger, A. Symeonidi, G. Radhakrishnan, F. Van Nieuwerburgh, D. Deforce, C. Chang, K. Karol, R. Hedrich, P. Ulvskov, G. Glöckner, C. Delwiche, J. Petrášek, Y. Van De Peer, J. Friml, M. Beilby, L. Dolan, Y. Kohara, S. Sugano, A. Fujiyama, P.M. Delaux, M. Quint, G. Theissen, M. Hagemann, J. Harholt, C. Dunand, S. Zachgo, J. Langdale, F. Maumus, D. Van Der Straeten, S.B. Gould, S. Rensing, Cell 174 (2018) 448–464.e24."},"isi":1,"department":[{"_id":"JiFr"}],"pmid":1,"scopus_import":"1","quality_controlled":"1","abstract":[{"lang":"eng","text":"Land plants evolved from charophytic algae, among which Charophyceae possess the most complex body plans. We present the genome of Chara braunii; comparison of the genome to those of land plants identified evolutionary novelties for plant terrestrialization and land plant heritage genes. C. braunii employs unique xylan synthases for cell wall biosynthesis, a phragmoplast (cell separation) mechanism similar to that of land plants, and many phytohormones. C. braunii plastids are controlled via land-plant-like retrograde signaling, and transcriptional regulation is more elaborate than in other algae. The morphological complexity of this organism may result from expanded gene families, with three cases of particular note: genes effecting tolerance to reactive oxygen species (ROS), LysM receptor-like kinases, and transcription factors (TFs). Transcriptomic analysis of sexual reproductive structures reveals intricate control by TFs, activity of the ROS gene network, and the ancestral use of plant-like storage and stress protection proteins in the zygote."}],"project":[{"grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"}],"month":"07","type":"journal_article","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_processing_charge":"No","oa_version":"Published Version","date_created":"2018-12-11T11:44:53Z","date_published":"2018-07-12T00:00:00Z","title":"The Chara genome: Secondary complexity and implications for plant terrestrialization","ec_funded":1,"status":"public"}