{"title":"Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3","intvolume":"       143","publisher":"Company of Biologists","publication_status":"published","date_updated":"2021-01-12T06:49:32Z","quality_controlled":"1","abstract":[{"text":"Lateral root primordia (LRP) originate from pericycle stem cells located deep within parental root tissues. LRP emerge through overlying root tissues by inducing auxin-dependent cell separation and hydraulic changes in adjacent cells. The auxin-inducible auxin influx carrier LAX3 plays a key role concentrating this signal in cells overlying LRP. Delimiting LAX3 expression to two adjacent cell files overlying new LRP is crucial to ensure that auxin-regulated cell separation occurs solely along their shared walls. Multiscale modeling has predicted that this highly focused pattern of expression requires auxin to sequentially induce auxin efflux and influx carriers PIN3 and LAX3, respectively. Consistent with model predictions, we report that auxin-inducible LAX3 expression is regulated indirectly by AUXIN RESPONSE FACTOR 7 (ARF7). Yeast one-hybrid screens revealed that the LAX3 promoter is bound by the transcription factor LBD29, which is a direct target for regulation by ARF7. Disrupting auxin-inducible LBD29 expression or expressing an LBD29-SRDX transcriptional repressor phenocopied the lax3 mutant, resulting in delayed lateral root emergence. We conclude that sequential LBD29 and LAX3 induction by auxin is required to coordinate cell separation and organ emergence.","lang":"eng"}],"language":[{"iso":"eng"}],"date_published":"2016-09-13T00:00:00Z","issue":"18","date_created":"2018-12-11T11:51:04Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We acknowledge the support of glasshouse technicians at the University of\r\nNottingham for help with plant growth and the Nottingham\r\nArabidopsis\r\nStock Centre\r\n(NASC) for providing\r\nArabidopsis\r\nlines. This research was supported by the Biotechnology and Biological Sciences Research Council (BBSRC) (to A.B. and M.J.B.); the European Research Council (ERC) Advanced Grant SysArc (to B.S.) and FUTUREROOTS (to M.J.B.); The Royal Society for University and Wolfson Research Fellowship awards (to A.B. and M.J.B.); a Federation of European Biochemical Societies (FEBS) Long-Term Fellowship (to B.P.); an Intra-European Fellowship for Career Development under the 7th framework of the European Commission [IEF-2008-220506 to B.P.]; a European Molecular Biology Organization (EMBO) Long-Term Fellowship (to B.P.); and a European Reintegration Grant under the 7th framework of the European Commission [ERG-2010-276662 to B.P.]; Interuniversity Attraction Poles Programme [initiated by the Belgian Science Policy Office (Federaal Wetenschapsbeleid)] (to M.J.B.); The Ministry of Education, Culture, Sports, Science, and Technology (MEXT), Japan: Grants-in-Aid for Scientific Research on Innovative Areas [25110330 to H.F.] and a JSPS Research Fellowship for Young Scientists [12J02079 to T.G.]; funds for research performed by S.M.B. and A.G. were provided by University of California, Davis startup funds.","main_file_link":[{"open_access":"1","url":"https://hal.archives-ouvertes.fr/hal-01595056/"}],"year":"2016","oa_version":"Preprint","month":"09","doi":"10.1242/dev.136283","author":[{"last_name":"Porco","first_name":"Silvana","full_name":"Porco, Silvana"},{"full_name":"Larrieu, Antoine","first_name":"Antoine","last_name":"Larrieu"},{"first_name":"Yujuan","full_name":"Du, Yujuan","last_name":"Du"},{"last_name":"Gaudinier","first_name":"Allison","full_name":"Gaudinier, Allison"},{"full_name":"Goh, Tatsuaki","first_name":"Tatsuaki","last_name":"Goh"},{"last_name":"Swarup","full_name":"Swarup, Kamal","first_name":"Kamal"},{"last_name":"Swarup","full_name":"Swarup, Ranjan","first_name":"Ranjan"},{"last_name":"Kuempers","full_name":"Kuempers, Britta","first_name":"Britta"},{"last_name":"Bishopp","full_name":"Bishopp, Anthony","first_name":"Anthony"},{"first_name":"Julien","full_name":"Lavenus, Julien","last_name":"Lavenus"},{"last_name":"Casimiro","first_name":"Ilda","full_name":"Casimiro, Ilda"},{"full_name":"Hill, Kristine","first_name":"Kristine","last_name":"Hill"},{"first_name":"Eva","full_name":"Benková, Eva","orcid":"0000-0002-8510-9739","last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Hidehiro","full_name":"Fukaki, Hidehiro","last_name":"Fukaki"},{"last_name":"Brady","first_name":"Siobhan","full_name":"Brady, Siobhan"},{"first_name":"Ben","full_name":"Scheres, Ben","last_name":"Scheres"},{"last_name":"Peéet","first_name":"Benjamin","full_name":"Peéet, Benjamin"},{"first_name":"Malcolm","full_name":"Bennett, Malcolm","last_name":"Bennett"}],"day":"13","_id":"1273","oa":1,"scopus_import":1,"volume":143,"publication":"Development","page":"3340 - 3349","citation":{"ieee":"S. Porco <i>et al.</i>, “Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3,” <i>Development</i>, vol. 143, no. 18. Company of Biologists, pp. 3340–3349, 2016.","mla":"Porco, Silvana, et al. “Lateral Root Emergence in Arabidopsis Is Dependent on Transcription Factor LBD29 Regulation of Auxin Influx Carrier LAX3.” <i>Development</i>, vol. 143, no. 18, Company of Biologists, 2016, pp. 3340–49, doi:<a href=\"https://doi.org/10.1242/dev.136283\">10.1242/dev.136283</a>.","ista":"Porco S, Larrieu A, Du Y, Gaudinier A, Goh T, Swarup K, Swarup R, Kuempers B, Bishopp A, Lavenus J, Casimiro I, Hill K, Benková E, Fukaki H, Brady S, Scheres B, Peéet B, Bennett M. 2016. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development. 143(18), 3340–3349.","ama":"Porco S, Larrieu A, Du Y, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. <i>Development</i>. 2016;143(18):3340-3349. doi:<a href=\"https://doi.org/10.1242/dev.136283\">10.1242/dev.136283</a>","apa":"Porco, S., Larrieu, A., Du, Y., Gaudinier, A., Goh, T., Swarup, K., … Bennett, M. (2016). Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.136283\">https://doi.org/10.1242/dev.136283</a>","short":"S. Porco, A. Larrieu, Y. Du, A. Gaudinier, T. Goh, K. Swarup, R. Swarup, B. Kuempers, A. Bishopp, J. Lavenus, I. Casimiro, K. Hill, E. Benková, H. Fukaki, S. Brady, B. Scheres, B. Peéet, M. Bennett, Development 143 (2016) 3340–3349.","chicago":"Porco, Silvana, Antoine Larrieu, Yujuan Du, Allison Gaudinier, Tatsuaki Goh, Kamal Swarup, Ranjan Swarup, et al. “Lateral Root Emergence in Arabidopsis Is Dependent on Transcription Factor LBD29 Regulation of Auxin Influx Carrier LAX3.” <i>Development</i>. Company of Biologists, 2016. <a href=\"https://doi.org/10.1242/dev.136283\">https://doi.org/10.1242/dev.136283</a>."},"status":"public","publist_id":"6044","department":[{"_id":"EvBe"}],"type":"journal_article"}