45 Publications

Mark all

[45]
2021 | Journal Article | IST-REx-ID: 9877 | OA
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
J.A. Rodrigues, P.-H. Hsieh, D. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, X. Ye, N.D. Nguyen, S. Nijjar, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 118 (2021).
View | Files available | DOI | PubMed | Europe PMC
 
[44]
2020 | Journal Article | IST-REx-ID: 9526 | OA
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
J. Choi, D.B. Lyons, M.Y. Kim, J.D. Moore, D. ZILBERMAN, Molecular Cell 77 (2020) 310–323.e7.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[43]
2019 | Journal Article | IST-REx-ID: 9460 | OA
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. ZILBERMAN, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.
View | Files available | DOI | PubMed | Europe PMC
 
[42]
2019 | Journal Article | IST-REx-ID: 9530 | OA
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. ZILBERMAN, A. Zemach, Epigenetics and Chromatin 12 (2019).
View | Files available | DOI | PubMed | Europe PMC
 
[41]
2018 | Journal Article | IST-REx-ID: 9471 | OA
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis
J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.
View | Files available | DOI | PubMed | Europe PMC
 
[40]
2017 | Journal Article | IST-REx-ID: 9445 | OA View | Files available | DOI | PubMed | Europe PMC
 
[39]
2017 | Journal Article | IST-REx-ID: 9506 | OA View | Files available | DOI | PubMed | Europe PMC
 
[38]
2016 | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. ZILBERMAN, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[37]
2016 | Journal Article | IST-REx-ID: 9456 | OA
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. ZILBERMAN, S.W. Roy, Nature 538 (2016) 533–536.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[36]
2016 | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[35]
2016 | Journal Article | IST-REx-ID: 9474 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[34]
2015 | Journal Article | IST-REx-ID: 9532 | OA
Evolution and function of genomic imprinting in plants
J.A. Rodrigues, D. ZILBERMAN, Genes and Development 29 (2015) 2517–2531.
View | Files available | DOI | PubMed | Europe PMC
 
[33]
2014 | Journal Article | IST-REx-ID: 9458 | OA View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[32]
2014 | Journal Article | IST-REx-ID: 9479 | OA
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. ZILBERMAN, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[31]
2014 | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. ZILBERMAN, Trends in Plant Science 19 (2014) 320–326.
View | DOI | PubMed | Europe PMC
 
[30]
2013 | Journal Article | IST-REx-ID: 9459 | OA
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
A. Zemach, M.Y. Kim, P.-H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. ZILBERMAN, Cell 153 (2013) 193–205.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[29]
2013 | Journal Article | IST-REx-ID: 9481 | OA
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
J.A. Rodrigues, R. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 110 (2013) 7934–7939.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[28]
2013 | Journal Article | IST-REx-ID: 9520 | OA
A conversation across generations: Soma-germ cell crosstalk in plants
X. Feng, D. ZILBERMAN, H. Dickinson, Developmental Cell 24 (2013) 215–225.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[27]
2012 | Journal Article | IST-REx-ID: 9451 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. ZILBERMAN, Science 337 (2012) 1360–1364.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[26]
2012 | Journal Article | IST-REx-ID: 9497 | OA
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. ZILBERMAN, PLoS Genetics 8 (2012).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[25]
2012 | Journal Article | IST-REx-ID: 9499 | OA
EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development
S.Y. Kim, J. Lee, L. Eshed-Williams, D. ZILBERMAN, Z.R. Sung, PLoS Genetics 8 (2012).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[24]
2012 | Journal Article | IST-REx-ID: 9535 | OA
DNA methylation, H2A.Z, and the regulation of constitutive expression
D. Coleman-Derr, D. ZILBERMAN, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[23]
2012 | Journal Article | IST-REx-ID: 9528
Regulation of biological accuracy, precision, and memory by plant chromatin organization
J.T. Huff, D. ZILBERMAN, Current Opinion in Genetics and Development 22 (2012) 132–138.
View | DOI | PubMed | Europe PMC
 
[22]
2011 | Journal Article | IST-REx-ID: 9483 | OA
Regulation of imprinted gene expression in Arabidopsis endosperm
T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[21]
2011 | Other Publication | IST-REx-ID: 9522 | OA
Balancing parental contributions in plant embryonic gene activation
D. ZILBERMAN, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2010 | Journal Article | IST-REx-ID: 9452
Genome-wide evolutionary analysis of eukaryotic DNA methylation
A. Zemach, I.E. McDaniel, P. Silva, D. ZILBERMAN, Science 328 (2010) 916–919.
View | DOI | PubMed | Europe PMC
 
[19]
2010 | Journal Article | IST-REx-ID: 9485 | OA
Local DNA hypomethylation activates genes in rice endosperm
A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D. ZILBERMAN, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[18]
2010 | Journal Article | IST-REx-ID: 9489 | OA
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
A. Zemach, D. ZILBERMAN, Current Biology 20 (2010) R780–R785.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2009 | Journal Article | IST-REx-ID: 9453 | OA
Genome-wide demethylation of Arabidopsis endosperm
T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. ZILBERMAN, Science 324 (2009) 1451–1454.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[16]
2008 | Journal Article | IST-REx-ID: 9457 | OA
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
D. ZILBERMAN, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[15]
2008 | Journal Article | IST-REx-ID: 9537
The evolving functions of DNA methylation
D. ZILBERMAN, Current Opinion in Plant Biology 11 (2008) 554–559.
View | DOI | PubMed | Europe PMC
 
[14]
2007 | Journal Article | IST-REx-ID: 9487 | OA
DNA demethylation in the Arabidopsis genome
J. Penterman, D. ZILBERMAN, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. ZILBERMAN, The Human Promoter Methylome, Nature Publishing Group, 2007.
View | DOI | PubMed | Europe PMC
 
[12]
2007 | Journal Article | IST-REx-ID: 9524 | OA
Genome-wide analysis of DNA methylation patterns
D. ZILBERMAN, S. Henikoff, Development 134 (2007) 3959–3965.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[11]
2006 | Journal Article | IST-REx-ID: 9505
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. ZILBERMAN, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
View | DOI | PubMed | Europe PMC
 
[10]
2005 | Journal Article | IST-REx-ID: 9491 | OA
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. ZILBERMAN, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[9]
2005 | Journal Article | IST-REx-ID: 9514 | OA
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. ZILBERMAN, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2005 | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. ZILBERMAN, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
View | DOI | PubMed | Europe PMC
 
[7]
2004 | Journal Article | IST-REx-ID: 9493 | OA
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
D. ZILBERMAN, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[6]
2004 | Journal Article | IST-REx-ID: 9454
RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. ZILBERMAN, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
View | DOI | PubMed | Europe PMC
 
[5]
2004 | Journal Article | IST-REx-ID: 9517 | OA
Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. ZILBERMAN, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[4]
2004 | Journal Article | IST-REx-ID: 9511 | OA
Silencing of transposons in plant genomes: kick them when they're down
D. ZILBERMAN, S. Henikoff, Genome Biology 5 (2004).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[3]
2003 | Journal Article | IST-REx-ID: 9495 | OA
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. ZILBERMAN, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[2]
2003 | Journal Article | IST-REx-ID: 9455
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
D. ZILBERMAN, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
View | DOI | PubMed | Europe PMC
 
[1]
2001 | Journal Article | IST-REx-ID: 9444
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. ZILBERMAN, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
View | DOI | PubMed | Europe PMC
 

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Filter Publications

45 Publications

Mark all

[45]
2021 | Journal Article | IST-REx-ID: 9877 | OA
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
J.A. Rodrigues, P.-H. Hsieh, D. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, X. Ye, N.D. Nguyen, S. Nijjar, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 118 (2021).
View | Files available | DOI | PubMed | Europe PMC
 
[44]
2020 | Journal Article | IST-REx-ID: 9526 | OA
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
J. Choi, D.B. Lyons, M.Y. Kim, J.D. Moore, D. ZILBERMAN, Molecular Cell 77 (2020) 310–323.e7.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[43]
2019 | Journal Article | IST-REx-ID: 9460 | OA
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. ZILBERMAN, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.
View | Files available | DOI | PubMed | Europe PMC
 
[42]
2019 | Journal Article | IST-REx-ID: 9530 | OA
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. ZILBERMAN, A. Zemach, Epigenetics and Chromatin 12 (2019).
View | Files available | DOI | PubMed | Europe PMC
 
[41]
2018 | Journal Article | IST-REx-ID: 9471 | OA
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis
J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.
View | Files available | DOI | PubMed | Europe PMC
 
[40]
2017 | Journal Article | IST-REx-ID: 9445 | OA View | Files available | DOI | PubMed | Europe PMC
 
[39]
2017 | Journal Article | IST-REx-ID: 9506 | OA View | Files available | DOI | PubMed | Europe PMC
 
[38]
2016 | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. ZILBERMAN, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[37]
2016 | Journal Article | IST-REx-ID: 9456 | OA
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. ZILBERMAN, S.W. Roy, Nature 538 (2016) 533–536.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[36]
2016 | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[35]
2016 | Journal Article | IST-REx-ID: 9474 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[34]
2015 | Journal Article | IST-REx-ID: 9532 | OA
Evolution and function of genomic imprinting in plants
J.A. Rodrigues, D. ZILBERMAN, Genes and Development 29 (2015) 2517–2531.
View | Files available | DOI | PubMed | Europe PMC
 
[33]
2014 | Journal Article | IST-REx-ID: 9458 | OA View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[32]
2014 | Journal Article | IST-REx-ID: 9479 | OA
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. ZILBERMAN, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[31]
2014 | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. ZILBERMAN, Trends in Plant Science 19 (2014) 320–326.
View | DOI | PubMed | Europe PMC
 
[30]
2013 | Journal Article | IST-REx-ID: 9459 | OA
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
A. Zemach, M.Y. Kim, P.-H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. ZILBERMAN, Cell 153 (2013) 193–205.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[29]
2013 | Journal Article | IST-REx-ID: 9481 | OA
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
J.A. Rodrigues, R. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, P.C. Ronald, R.L. Fischer, D. ZILBERMAN, Proceedings of the National Academy of Sciences 110 (2013) 7934–7939.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[28]
2013 | Journal Article | IST-REx-ID: 9520 | OA
A conversation across generations: Soma-germ cell crosstalk in plants
X. Feng, D. ZILBERMAN, H. Dickinson, Developmental Cell 24 (2013) 215–225.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[27]
2012 | Journal Article | IST-REx-ID: 9451 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. ZILBERMAN, Science 337 (2012) 1360–1364.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[26]
2012 | Journal Article | IST-REx-ID: 9497 | OA
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. ZILBERMAN, PLoS Genetics 8 (2012).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[25]
2012 | Journal Article | IST-REx-ID: 9499 | OA
EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development
S.Y. Kim, J. Lee, L. Eshed-Williams, D. ZILBERMAN, Z.R. Sung, PLoS Genetics 8 (2012).
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[24]
2012 | Journal Article | IST-REx-ID: 9535 | OA
DNA methylation, H2A.Z, and the regulation of constitutive expression
D. Coleman-Derr, D. ZILBERMAN, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[23]
2012 | Journal Article | IST-REx-ID: 9528
Regulation of biological accuracy, precision, and memory by plant chromatin organization
J.T. Huff, D. ZILBERMAN, Current Opinion in Genetics and Development 22 (2012) 132–138.
View | DOI | PubMed | Europe PMC
 
[22]
2011 | Journal Article | IST-REx-ID: 9483 | OA
Regulation of imprinted gene expression in Arabidopsis endosperm
T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. ZILBERMAN, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[21]
2011 | Other Publication | IST-REx-ID: 9522 | OA
Balancing parental contributions in plant embryonic gene activation
D. ZILBERMAN, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2010 | Journal Article | IST-REx-ID: 9452
Genome-wide evolutionary analysis of eukaryotic DNA methylation
A. Zemach, I.E. McDaniel, P. Silva, D. ZILBERMAN, Science 328 (2010) 916–919.
View | DOI | PubMed | Europe PMC
 
[19]
2010 | Journal Article | IST-REx-ID: 9485 | OA
Local DNA hypomethylation activates genes in rice endosperm
A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D. ZILBERMAN, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[18]
2010 | Journal Article | IST-REx-ID: 9489 | OA
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
A. Zemach, D. ZILBERMAN, Current Biology 20 (2010) R780–R785.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2009 | Journal Article | IST-REx-ID: 9453 | OA
Genome-wide demethylation of Arabidopsis endosperm
T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. ZILBERMAN, Science 324 (2009) 1451–1454.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[16]
2008 | Journal Article | IST-REx-ID: 9457 | OA
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
D. ZILBERMAN, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[15]
2008 | Journal Article | IST-REx-ID: 9537
The evolving functions of DNA methylation
D. ZILBERMAN, Current Opinion in Plant Biology 11 (2008) 554–559.
View | DOI | PubMed | Europe PMC
 
[14]
2007 | Journal Article | IST-REx-ID: 9487 | OA
DNA demethylation in the Arabidopsis genome
J. Penterman, D. ZILBERMAN, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. ZILBERMAN, The Human Promoter Methylome, Nature Publishing Group, 2007.
View | DOI | PubMed | Europe PMC
 
[12]
2007 | Journal Article | IST-REx-ID: 9524 | OA
Genome-wide analysis of DNA methylation patterns
D. ZILBERMAN, S. Henikoff, Development 134 (2007) 3959–3965.
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[11]
2006 | Journal Article | IST-REx-ID: 9505
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. ZILBERMAN, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
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[10]
2005 | Journal Article | IST-REx-ID: 9491 | OA
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. ZILBERMAN, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
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[9]
2005 | Journal Article | IST-REx-ID: 9514 | OA
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. ZILBERMAN, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
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[8]
2005 | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. ZILBERMAN, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
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[7]
2004 | Journal Article | IST-REx-ID: 9493 | OA
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
D. ZILBERMAN, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
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[6]
2004 | Journal Article | IST-REx-ID: 9454
RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. ZILBERMAN, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
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[5]
2004 | Journal Article | IST-REx-ID: 9517 | OA
Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. ZILBERMAN, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
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[4]
2004 | Journal Article | IST-REx-ID: 9511 | OA
Silencing of transposons in plant genomes: kick them when they're down
D. ZILBERMAN, S. Henikoff, Genome Biology 5 (2004).
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[3]
2003 | Journal Article | IST-REx-ID: 9495 | OA
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. ZILBERMAN, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
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[2]
2003 | Journal Article | IST-REx-ID: 9455
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
D. ZILBERMAN, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
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[1]
2001 | Journal Article | IST-REx-ID: 9444
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. ZILBERMAN, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
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