Caroline Uhler
Uhler Group
26 Publications
2023 | Conference Paper | IST-REx-ID: 14974 | 
Causality in the time of LLMs: Round table discussion results of CLeaR 2023
C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang, B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning, 2023.
[Submitted Version]
View
| Files available
C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang, B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning, 2023.
2018 | Journal Article | IST-REx-ID: 1092 |
Generalized permutohedra from probabilistic graphical models
F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
[Preprint]
View
| DOI
| Download Preprint (ext.)
F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
2018 | Journal Article | IST-REx-ID: 2015 |
Learning directed acyclic graphs based on sparsest permutations
G. Raskutti, C. Uhler, STAT 7 (2018).
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
G. Raskutti, C. Uhler, STAT 7 (2018).
2017 | Journal Article | IST-REx-ID: 698 |
Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression
Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
[Published Version]
View
| Files available
| DOI
Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
2017 | Journal Article | IST-REx-ID: 2016 |
Exact goodness-of-fit testing for the Ising model
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
2017 | Journal Article | IST-REx-ID: 1208 |
Maximum likelihood estimation for linear Gaussian covariance models
P. Zwiernik, C. Uhler, D. Richards, Journal of the Royal Statistical Society. Series B: Statistical Methodology 79 (2017) 1269–1292.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
P. Zwiernik, C. Uhler, D. Richards, Journal of the Royal Statistical Society. Series B: Statistical Methodology 79 (2017) 1269–1292.
2017 | Journal Article | IST-REx-ID: 1089 |
Total positivity in Markov structures
S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, P. Zwiernik, Annals of Statistics 45 (2017) 1152–1184.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, P. Zwiernik, Annals of Statistics 45 (2017) 1152–1184.
2016 | Journal Article | IST-REx-ID: 1088
Geometric control and modeling of genome reprogramming
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
View
| DOI
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
2016 | Journal Article | IST-REx-ID: 1293 |
Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors
L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
[Preprint]
View
| DOI
| Download Preprint (ext.)
L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
2016 | Journal Article | IST-REx-ID: 1480 |
Exponential varieties
M. Michałek, B. Sturmfels, C. Uhler, P. Zwiernik, Proceedings of the London Mathematical Society 112 (2016) 27–56.
[Preprint]
View
| DOI
| Download Preprint (ext.)
M. Michałek, B. Sturmfels, C. Uhler, P. Zwiernik, Proceedings of the London Mathematical Society 112 (2016) 27–56.
2015 | Journal Article | IST-REx-ID: 2014 |
Faithfulness and learning hypergraphs from discrete distributions
A. Klimova, C. Uhler, T. Rudas, Computational Statistics & Data Analysis 87 (2015) 57–72.
[Preprint]
View
| DOI
| Download Preprint (ext.)
A. Klimova, C. Uhler, T. Rudas, Computational Statistics & Data Analysis 87 (2015) 57–72.
2014 | Journal Article | IST-REx-ID: 2011 |
Scalable privacy-preserving data sharing methodology for genome-wide association studies
F. Yu, S. Fienberg, A. Slaković, C. Uhler, Journal of Biomedical Informatics 50 (2014) 133–141.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
F. Yu, S. Fienberg, A. Slaković, C. Uhler, Journal of Biomedical Informatics 50 (2014) 133–141.
2014 | Journal Article | IST-REx-ID: 2013 |
Hypersurfaces and their singularities in partial correlation testing
S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
2014 | Preprint | IST-REx-ID: 2017 |
Exact formulas for the normalizing constants of Wishart distributions for graphical models
C. Uhler, A. Lenkoski, D. Richards, ArXiv (2014).
View
| Download (ext.)
C. Uhler, A. Lenkoski, D. Richards, ArXiv (2014).
2014 | Conference Paper | IST-REx-ID: 2047 |
Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases
F. Yu, M. Rybar, C. Uhler, S. Fienberg, in:, J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 170–184.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| arXiv
F. Yu, M. Rybar, C. Uhler, S. Fienberg, in:, J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 170–184.
2014 | Preprint | IST-REx-ID: 2012 |
Sphere packing with limited overlap
M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| arXiv
M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).
2013 | Journal Article | IST-REx-ID: 2010 |
Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
[Published Version]
View
| DOI
| Download Published Version (ext.)
| arXiv
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
2013 | Journal Article | IST-REx-ID: 2009 |
Privacy-preserving data sharing for genome-wide association studies
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
[Published Version]
View
| DOI
| Download Published Version (ext.)
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
2013 | Journal Article | IST-REx-ID: 2280 |
Packing ellipsoids with overlap
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
2012 | Journal Article | IST-REx-ID: 2959 |
Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.
[Preprint]
View
| DOI
| Download Preprint (ext.)
C. Uhler, Annals of Statistics 40 (2012) 238–261.
2011 | Journal Article | IST-REx-ID: 2961 |
Detecting epistasis via Markov bases
A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
View
| DOI
| Download (ext.)
A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
2011 | Conference Paper | IST-REx-ID: 2960
Privacy Preserving GWAS Data Sharing
S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
View
| DOI
S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
2010 | Journal Article | IST-REx-ID: 3306 |
Commuting birth and death processes
S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010) 238–266.
View
| DOI
| Download (ext.)
S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010) 238–266.
2010 | Journal Article | IST-REx-ID: 3308 |
Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry
B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics 62 (2010) 603–638.
View
| DOI
| Download (ext.)
B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics 62 (2010) 603–638.
2009 | Journal Article | IST-REx-ID: 3309
Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard
C. Uhler, Journal of Agricultural Biological and Environmental Statistics 14 (2009) 79–98.
View
| DOI
C. Uhler, Journal of Agricultural Biological and Environmental Statistics 14 (2009) 79–98.
2008 | Journal Article | IST-REx-ID: 3307 |
A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View
| DOI
| Download (ext.)
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
26 Publications
2023 | Conference Paper | IST-REx-ID: 14974 |
Causality in the time of LLMs: Round table discussion results of CLeaR 2023
C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang, B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning, 2023.
[Submitted Version]
View
| Files available
C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang, B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning, 2023.
2018 | Journal Article | IST-REx-ID: 1092 |
Generalized permutohedra from probabilistic graphical models
F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
[Preprint]
View
| DOI
| Download Preprint (ext.)
F. Mohammadi, C. Uhler, C. Wang, J. Yu, SIAM Journal on Discrete Mathematics 32 (2018) 64–93.
2018 | Journal Article | IST-REx-ID: 2015 |
Learning directed acyclic graphs based on sparsest permutations
G. Raskutti, C. Uhler, STAT 7 (2018).
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
G. Raskutti, C. Uhler, STAT 7 (2018).
2017 | Journal Article | IST-REx-ID: 698 |
Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression
Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
[Published Version]
View
| Files available
| DOI
Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the Cell 28 (2017) 1997–2009.
2017 | Journal Article | IST-REx-ID: 2016 |
Exact goodness-of-fit testing for the Ising model
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
2017 | Journal Article | IST-REx-ID: 1208 |
Maximum likelihood estimation for linear Gaussian covariance models
P. Zwiernik, C. Uhler, D. Richards, Journal of the Royal Statistical Society. Series B: Statistical Methodology 79 (2017) 1269–1292.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
P. Zwiernik, C. Uhler, D. Richards, Journal of the Royal Statistical Society. Series B: Statistical Methodology 79 (2017) 1269–1292.
2017 | Journal Article | IST-REx-ID: 1089 |
Total positivity in Markov structures
S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, P. Zwiernik, Annals of Statistics 45 (2017) 1152–1184.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, P. Zwiernik, Annals of Statistics 45 (2017) 1152–1184.
2016 | Journal Article | IST-REx-ID: 1088
Geometric control and modeling of genome reprogramming
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
View
| DOI
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
2016 | Journal Article | IST-REx-ID: 1293 |
Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors
L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
[Preprint]
View
| DOI
| Download Preprint (ext.)
L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
2016 | Journal Article | IST-REx-ID: 1480 |
Exponential varieties
M. Michałek, B. Sturmfels, C. Uhler, P. Zwiernik, Proceedings of the London Mathematical Society 112 (2016) 27–56.
[Preprint]
View
| DOI
| Download Preprint (ext.)
M. Michałek, B. Sturmfels, C. Uhler, P. Zwiernik, Proceedings of the London Mathematical Society 112 (2016) 27–56.
2015 | Journal Article | IST-REx-ID: 2014 |
Faithfulness and learning hypergraphs from discrete distributions
A. Klimova, C. Uhler, T. Rudas, Computational Statistics & Data Analysis 87 (2015) 57–72.
[Preprint]
View
| DOI
| Download Preprint (ext.)
A. Klimova, C. Uhler, T. Rudas, Computational Statistics & Data Analysis 87 (2015) 57–72.
2014 | Journal Article | IST-REx-ID: 2011 |
Scalable privacy-preserving data sharing methodology for genome-wide association studies
F. Yu, S. Fienberg, A. Slaković, C. Uhler, Journal of Biomedical Informatics 50 (2014) 133–141.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
F. Yu, S. Fienberg, A. Slaković, C. Uhler, Journal of Biomedical Informatics 50 (2014) 133–141.
2014 | Journal Article | IST-REx-ID: 2013 |
Hypersurfaces and their singularities in partial correlation testing
S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
S. Lin, C. Uhler, B. Sturmfels, P. Bühlmann, Foundations of Computational Mathematics 14 (2014) 1079–1116.
2014 | Preprint | IST-REx-ID: 2017 |
Exact formulas for the normalizing constants of Wishart distributions for graphical models
C. Uhler, A. Lenkoski, D. Richards, ArXiv (2014).
View
| Download (ext.)
C. Uhler, A. Lenkoski, D. Richards, ArXiv (2014).
2014 | Conference Paper | IST-REx-ID: 2047 |
Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases
F. Yu, M. Rybar, C. Uhler, S. Fienberg, in:, J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 170–184.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| arXiv
F. Yu, M. Rybar, C. Uhler, S. Fienberg, in:, J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014, pp. 170–184.
2014 | Preprint | IST-REx-ID: 2012 |
Sphere packing with limited overlap
M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| arXiv
M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).
2013 | Journal Article | IST-REx-ID: 2010 |
Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
[Published Version]
View
| DOI
| Download Published Version (ext.)
| arXiv
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
2013 | Journal Article | IST-REx-ID: 2009 |
Privacy-preserving data sharing for genome-wide association studies
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
[Published Version]
View
| DOI
| Download Published Version (ext.)
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
2013 | Journal Article | IST-REx-ID: 2280 |
Packing ellipsoids with overlap
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
2012 | Journal Article | IST-REx-ID: 2959 |
Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.
[Preprint]
View
| DOI
| Download Preprint (ext.)
C. Uhler, Annals of Statistics 40 (2012) 238–261.
2011 | Journal Article | IST-REx-ID: 2961 |
Detecting epistasis via Markov bases
A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
View
| DOI
| Download (ext.)
A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
2011 | Conference Paper | IST-REx-ID: 2960
Privacy Preserving GWAS Data Sharing
S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
View
| DOI
S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
2010 | Journal Article | IST-REx-ID: 3306 |
Commuting birth and death processes
S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010) 238–266.
View
| DOI
| Download (ext.)
S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010) 238–266.
2010 | Journal Article | IST-REx-ID: 3308 |
Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry
B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics 62 (2010) 603–638.
View
| DOI
| Download (ext.)
B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics 62 (2010) 603–638.
2009 | Journal Article | IST-REx-ID: 3309
Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard
C. Uhler, Journal of Agricultural Biological and Environmental Statistics 14 (2009) 79–98.
View
| DOI
C. Uhler, Journal of Agricultural Biological and Environmental Statistics 14 (2009) 79–98.
2008 | Journal Article | IST-REx-ID: 3307 |
A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View
| DOI
| Download (ext.)
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.