25 Publications

Mark all

[25]
2018 | Journal Article | IST-REx-ID: 1092   OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
View | DOI | Download (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015   OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018. doi:10.1002/sta4.183
View | DOI | Download (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 1089   OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
View | DOI | Download (ext.)
 
[22]
2017 | Journal Article | IST-REx-ID: 698   OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
View | Files available | DOI
 
[21]
2017 | Journal Article | IST-REx-ID: 1208   OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
View | DOI | Download (ext.)
 
[20]
2017 | Journal Article | IST-REx-ID: 2016   OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
View | Files available | DOI | Download (ext.) | arXiv
 
[19]
2016 | Journal Article | IST-REx-ID: 1293   OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
View | DOI | Download (ext.)
 
[18]
2016 | Journal Article | IST-REx-ID: 1480   OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
View | DOI | Download (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Journal Article | IST-REx-ID: 2014   OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
View | DOI | Download (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2013   OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
View | DOI | Download (ext.)
 
[14]
2014 | Journal Article | IST-REx-ID: 2011   OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
View | DOI | Download (ext.)
 
[13]
2014 | Conference Paper | IST-REx-ID: 2047   OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
View | DOI | Download (ext.) | arXiv
 
[12]
2014 | Preprint | IST-REx-ID: 2017   OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Conference Paper | IST-REx-ID: 2012   OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. In: Unknown; 2014:155-161.
View | Download (ext.)
 
[10]
2013 | Journal Article | IST-REx-ID: 2280   OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
View | DOI | Download (ext.) | arXiv
 
[9]
2013 | Journal Article | IST-REx-ID: 2010   OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
View | DOI | Download (ext.) | arXiv
 
[8]
2013 | Journal Article | IST-REx-ID: 2009   OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
View | DOI | Download (ext.)
 
[7]
2012 | Journal Article | IST-REx-ID: 2959   OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
View | DOI | Download (ext.)
 
[6]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Journal Article | IST-REx-ID: 2961   OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Journal Article | IST-REx-ID: 3308   OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3306   OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307   OA
Green R, Malaspinas A, Krause J, et al. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 2008;134:416-426. doi:10.1016/j.cell.2008.06.021
View | DOI | Download (ext.)
 

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25 Publications

Mark all

[25]
2018 | Journal Article | IST-REx-ID: 1092   OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
View | DOI | Download (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015   OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018. doi:10.1002/sta4.183
View | DOI | Download (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 1089   OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
View | DOI | Download (ext.)
 
[22]
2017 | Journal Article | IST-REx-ID: 698   OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
View | Files available | DOI
 
[21]
2017 | Journal Article | IST-REx-ID: 1208   OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
View | DOI | Download (ext.)
 
[20]
2017 | Journal Article | IST-REx-ID: 2016   OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
View | Files available | DOI | Download (ext.) | arXiv
 
[19]
2016 | Journal Article | IST-REx-ID: 1293   OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
View | DOI | Download (ext.)
 
[18]
2016 | Journal Article | IST-REx-ID: 1480   OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
View | DOI | Download (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Journal Article | IST-REx-ID: 2014   OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
View | DOI | Download (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2013   OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
View | DOI | Download (ext.)
 
[14]
2014 | Journal Article | IST-REx-ID: 2011   OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
View | DOI | Download (ext.)
 
[13]
2014 | Conference Paper | IST-REx-ID: 2047   OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
View | DOI | Download (ext.) | arXiv
 
[12]
2014 | Preprint | IST-REx-ID: 2017   OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Conference Paper | IST-REx-ID: 2012   OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. In: Unknown; 2014:155-161.
View | Download (ext.)
 
[10]
2013 | Journal Article | IST-REx-ID: 2280   OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
View | DOI | Download (ext.) | arXiv
 
[9]
2013 | Journal Article | IST-REx-ID: 2010   OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
View | DOI | Download (ext.) | arXiv
 
[8]
2013 | Journal Article | IST-REx-ID: 2009   OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
View | DOI | Download (ext.)
 
[7]
2012 | Journal Article | IST-REx-ID: 2959   OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
View | DOI | Download (ext.)
 
[6]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Journal Article | IST-REx-ID: 2961   OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Journal Article | IST-REx-ID: 3308   OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3306   OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307   OA
Green R, Malaspinas A, Krause J, et al. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 2008;134:416-426. doi:10.1016/j.cell.2008.06.021
View | DOI | Download (ext.)
 

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