25 Publications

Mark all

[25]
2018 | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
View | DOI | Download Preprint (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015 | OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018;7(1). doi:10.1002/sta4.183
View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 698 | OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
View | DOI | Download Submitted Version (ext.)
 
[21]
2017 | Journal Article | IST-REx-ID: 1089 | OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
View | DOI | Download Submitted Version (ext.)
 
[20]
2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
[19]
2016 | Journal Article | IST-REx-ID: 1293 | OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
View | DOI | Download Preprint (ext.)
 
[18]
2016 | Journal Article | IST-REx-ID: 1480 | OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
View | DOI | Download Preprint (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Journal Article | IST-REx-ID: 2014 | OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
View | DOI | Download Preprint (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2011 | OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Conference Paper | IST-REx-ID: 2012 | OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. In: Unknown; 2014:155-161.
View | Download Submitted Version (ext.)
 
[13]
2014 | Journal Article | IST-REx-ID: 2013 | OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Preprint | IST-REx-ID: 2017 | OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Conference Paper | IST-REx-ID: 2047 | OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 2009 | OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
View | DOI | Download Published Version (ext.)
 
[9]
2013 | Journal Article | IST-REx-ID: 2010 | OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
View | DOI | Download Published Version (ext.) | arXiv
 
[8]
2013 | Journal Article | IST-REx-ID: 2280 | OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 2959 | OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
View | DOI | Download Preprint (ext.)
 
[6]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Journal Article | IST-REx-ID: 3306 | OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 

Search

Filter Publications

25 Publications

Mark all

[25]
2018 | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
View | DOI | Download Preprint (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015 | OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018;7(1). doi:10.1002/sta4.183
View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 698 | OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
View | DOI | Download Submitted Version (ext.)
 
[21]
2017 | Journal Article | IST-REx-ID: 1089 | OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
View | DOI | Download Submitted Version (ext.)
 
[20]
2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
[19]
2016 | Journal Article | IST-REx-ID: 1293 | OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
View | DOI | Download Preprint (ext.)
 
[18]
2016 | Journal Article | IST-REx-ID: 1480 | OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
View | DOI | Download Preprint (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Journal Article | IST-REx-ID: 2014 | OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
View | DOI | Download Preprint (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2011 | OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Conference Paper | IST-REx-ID: 2012 | OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. In: Unknown; 2014:155-161.
View | Download Submitted Version (ext.)
 
[13]
2014 | Journal Article | IST-REx-ID: 2013 | OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Preprint | IST-REx-ID: 2017 | OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Conference Paper | IST-REx-ID: 2047 | OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 2009 | OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
View | DOI | Download Published Version (ext.)
 
[9]
2013 | Journal Article | IST-REx-ID: 2010 | OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
View | DOI | Download Published Version (ext.) | arXiv
 
[8]
2013 | Journal Article | IST-REx-ID: 2280 | OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 2959 | OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
View | DOI | Download Preprint (ext.)
 
[6]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Journal Article | IST-REx-ID: 3306 | OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 

Search

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