36 Publications

Mark all

[36]
2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess J, Pleska M, Guet CC, Tkačik G. 2019. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 15(7).
View | Files available | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 67
Igler C, Lagator M, Tkacik G, Bollback JP, Guet CC. 2018. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2(10), 1633–1643.
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 82   OA
Chaudhry W, Pleska M, Shah N, Weiss H, Mccall I, Meyer J, Gupta A, Guet CC, Levin B. 2018. Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. 16(8).
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. 2018. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 268, 40–52.
View | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 161
De Martino D, Mc AA, Bergmiller T, Guet CC, Tkacik G. 2018. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 9(1), 2988.
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585
Igler C, Lagator M, Tkacik G, Bollback JP, Guet CC. 2018. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring, IST Austria,p.
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 457
Pleska M, Lang M, Refardt D, Levin B, Guet CC. 2018. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2(2), 359–366.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 1351
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2017. Model checking the evolution of gene regulatory networks. Acta Informatica. 54(8), 765–787.
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 655   OA
Renault T, Abraham A, Bergmiller T, Paradis G, Rainville S, Charpentier E, Guet CC, Tu Y, Namba K, Keener J, Minamino T, Erhardt M. 2017. Bacterial flagella grow through an injection diffusion mechanism. eLife. 6.
View | Files available | DOI
 
[27]
2017 | Journal Article | IST-REx-ID: 561
Pleska M, Guet CC. 2017. Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. 13(12).
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 613   OA
Chait RP, Ruess J, Bergmiller T, Tkacik G, Guet CC. 2017. Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. 8(1).
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 954   OA
Lagator M, Paixao T, Barton NH, Bollback JP, Guet CC. 2017. On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife. 6.
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 570   OA
Lagator M, Sarikas S, Acar H, Bollback JP, Guet CC. 2017. Regulatory network structure determines patterns of intermolecular epistasis. eLife. 6.
View | Files available | DOI
 
[23]
2017 | Research Data | IST-REx-ID: 5564
Steinrück M, Guet CC. 2017. Fastq files for ‘Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection’, IST Austria,p.
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkacik G, Guet CC. 2017. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 356(6335), 311–315.
View | Files available | DOI
 
[21]
2017 | Research Data | IST-REx-ID: 5560
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkacik G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity, IST Austria,p.
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 735
Barone V, Lang M, Krens G, Pradhan S, Shamipour S, Sako K, Sikora MK, Guet CC, Heisenberg C-PJ. 2017. An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. 43(2), 198–211.
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 704   OA
Steinrück M, Guet CC. 2017. Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. eLife. 6, e25100.
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1243
Pleska M, Qian L, Okura R, Bergmiller T, Wakamoto Y, Kussell E, Guet CC. 2016. Bacterial autoimmunity due to a restriction-modification system. Current Biology. 26(3), 404–409.
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1427   OA
Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. 2016. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 33(3), 761–769.
View | Files available | DOI
 
[16]
2016 | Conference Paper | IST-REx-ID: 1524   OA
Beica A, Guet CC, Petrov T. 2016. Efficient reduction of kappa models by static inspection of the rule-set. HSB: Hybrid Systems Biology, LNCS, vol. 9271. 173–191.
View | DOI | Download (ext.)
 
[15]
2016 | Journal Article | IST-REx-ID: 1358
Friedlander T, Prizak R, Guet CC, Barton NH, Tkacik G. 2016. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 7, 12307.
View | Files available | DOI
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835   OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model checking gene regulatory networks. 9035, 469–483.
View | Files available | DOI | Download (ext.)
 
[13]
2012 | Journal Article | IST-REx-ID: 2943   OA
Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. 2012. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 86(6), 1318–1333.
View | DOI | Download (ext.)
 
[12]
2012 | Conference Paper | IST-REx-ID: 3136
Guet CC, Gupta A, Henzinger TA, Mateescu M, Sezgin A. 2012. Delayed continuous time Markov chains for genetic regulatory circuits. CAV: Computer Aided Verification, LNCS, vol. 7358. 294–309.
View | DOI
 
[11]
2011 | Journal Article | IST-REx-ID: 6496   OA
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3749   OA
Park H, Guet CC, Emonet T, Cluzel P. 2010. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. 62(3), 764–769.
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3748   OA
Park H, Pontius W, Guet CC, Marko J, Emonet T, Cluzel P. 2010. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 468, 819–823.
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751   OA
Kinkhabwala A, Guet CC. 2008. Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. 3(4), e2030.
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
Guet CC, Bruneaux L, Min T, Siegal Gaskins D, Figueroa I, Emonet T, Cluzel P. 2008. Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. 36(12).
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. 2006. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 48(1), 28–31.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755   OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. 2006. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 90(9), 3315–3321.
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752   OA
Vilar J, Guet CC, Leibler S. 2003. Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. 161(3), 471–476.
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
Guet CC, Elowitz M, Hsing W, Leibler S. 2002. Combinatorial synthesis of genetic networks. Science. 296(5572), 1466–1470.
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
Dogterom M, Felix M, Guet CC, Leibler S. 1996. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 133(1), 125–140.
View | DOI
 

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Citation Style: IST Annual Report

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36 Publications

Mark all

[36]
2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess J, Pleska M, Guet CC, Tkačik G. 2019. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 15(7).
View | Files available | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 67
Igler C, Lagator M, Tkacik G, Bollback JP, Guet CC. 2018. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2(10), 1633–1643.
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 82   OA
Chaudhry W, Pleska M, Shah N, Weiss H, Mccall I, Meyer J, Gupta A, Guet CC, Levin B. 2018. Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. 16(8).
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. 2018. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 268, 40–52.
View | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 161
De Martino D, Mc AA, Bergmiller T, Guet CC, Tkacik G. 2018. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 9(1), 2988.
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585
Igler C, Lagator M, Tkacik G, Bollback JP, Guet CC. 2018. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring, IST Austria,p.
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 457
Pleska M, Lang M, Refardt D, Levin B, Guet CC. 2018. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2(2), 359–366.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 1351
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2017. Model checking the evolution of gene regulatory networks. Acta Informatica. 54(8), 765–787.
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 655   OA
Renault T, Abraham A, Bergmiller T, Paradis G, Rainville S, Charpentier E, Guet CC, Tu Y, Namba K, Keener J, Minamino T, Erhardt M. 2017. Bacterial flagella grow through an injection diffusion mechanism. eLife. 6.
View | Files available | DOI
 
[27]
2017 | Journal Article | IST-REx-ID: 561
Pleska M, Guet CC. 2017. Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. 13(12).
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 613   OA
Chait RP, Ruess J, Bergmiller T, Tkacik G, Guet CC. 2017. Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. 8(1).
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 954   OA
Lagator M, Paixao T, Barton NH, Bollback JP, Guet CC. 2017. On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife. 6.
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 570   OA
Lagator M, Sarikas S, Acar H, Bollback JP, Guet CC. 2017. Regulatory network structure determines patterns of intermolecular epistasis. eLife. 6.
View | Files available | DOI
 
[23]
2017 | Research Data | IST-REx-ID: 5564
Steinrück M, Guet CC. 2017. Fastq files for ‘Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection’, IST Austria,p.
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkacik G, Guet CC. 2017. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 356(6335), 311–315.
View | Files available | DOI
 
[21]
2017 | Research Data | IST-REx-ID: 5560
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkacik G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity, IST Austria,p.
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 735
Barone V, Lang M, Krens G, Pradhan S, Shamipour S, Sako K, Sikora MK, Guet CC, Heisenberg C-PJ. 2017. An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. 43(2), 198–211.
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 704   OA
Steinrück M, Guet CC. 2017. Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. eLife. 6, e25100.
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1243
Pleska M, Qian L, Okura R, Bergmiller T, Wakamoto Y, Kussell E, Guet CC. 2016. Bacterial autoimmunity due to a restriction-modification system. Current Biology. 26(3), 404–409.
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1427   OA
Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. 2016. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 33(3), 761–769.
View | Files available | DOI
 
[16]
2016 | Conference Paper | IST-REx-ID: 1524   OA
Beica A, Guet CC, Petrov T. 2016. Efficient reduction of kappa models by static inspection of the rule-set. HSB: Hybrid Systems Biology, LNCS, vol. 9271. 173–191.
View | DOI | Download (ext.)
 
[15]
2016 | Journal Article | IST-REx-ID: 1358
Friedlander T, Prizak R, Guet CC, Barton NH, Tkacik G. 2016. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 7, 12307.
View | Files available | DOI
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835   OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model checking gene regulatory networks. 9035, 469–483.
View | Files available | DOI | Download (ext.)
 
[13]
2012 | Journal Article | IST-REx-ID: 2943   OA
Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. 2012. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 86(6), 1318–1333.
View | DOI | Download (ext.)
 
[12]
2012 | Conference Paper | IST-REx-ID: 3136
Guet CC, Gupta A, Henzinger TA, Mateescu M, Sezgin A. 2012. Delayed continuous time Markov chains for genetic regulatory circuits. CAV: Computer Aided Verification, LNCS, vol. 7358. 294–309.
View | DOI
 
[11]
2011 | Journal Article | IST-REx-ID: 6496   OA
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3749   OA
Park H, Guet CC, Emonet T, Cluzel P. 2010. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. 62(3), 764–769.
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3748   OA
Park H, Pontius W, Guet CC, Marko J, Emonet T, Cluzel P. 2010. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 468, 819–823.
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751   OA
Kinkhabwala A, Guet CC. 2008. Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. 3(4), e2030.
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
Guet CC, Bruneaux L, Min T, Siegal Gaskins D, Figueroa I, Emonet T, Cluzel P. 2008. Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. 36(12).
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. 2006. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 48(1), 28–31.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755   OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. 2006. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 90(9), 3315–3321.
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752   OA
Vilar J, Guet CC, Leibler S. 2003. Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. 161(3), 471–476.
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
Guet CC, Elowitz M, Hsing W, Leibler S. 2002. Combinatorial synthesis of genetic networks. Science. 296(5572), 1466–1470.
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
Dogterom M, Felix M, Guet CC, Leibler S. 1996. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 133(1), 125–140.
View | DOI
 

Search

Filter Publications

Display / Sort

Citation Style: IST Annual Report

Export / Embed