38 Publications

Mark all

[38]
2020 | Journal Article | IST-REx-ID: 7652 | OA
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4, pp. 612–625, 2020.
View | Files available | DOI
 
[37]
2019 | Conference Paper | IST-REx-ID: 7147
C. C. Guet, T. A. Henzinger, C. Igler, T. Petrov, and A. Sezgin, “Transient memory in gene regulation,” in 17th International Conference on Computational Methods in Systems Biology, Trieste, Italy, 2019, vol. 11773, pp. 155–187.
View | DOI
 
[36]
2019 | Journal Article | IST-REx-ID: 6784 | OA
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7, 2019.
View | Files available | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 457
M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity,” Nature Ecology and Evolution, vol. 2, no. 2, pp. 359–366, 2018.
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 503
K. Tomasek, T. Bergmiller, and C. C. Guet, “Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains,” Journal of Biotechnology, vol. 268, pp. 40–52, 2018.
View | DOI
 
[33]
2018 | Research Data | IST-REx-ID: 5585 | OA
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. IST Austria, 2018.
View | Files available | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67 | OA
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10, pp. 1633–1643, 2018.
View | Files available | DOI
 
[31]
2018 | Journal Article | IST-REx-ID: 161 | OA
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1, 2018.
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 82 | OA
W. Chaudhry et al., “Leaky resistance and the conditions for the existence of lytic bacteriophage,” PLoS Biology, vol. 16, no. 8, 2018.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 735
V. Barone et al., “An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate,” Developmental Cell, vol. 43, no. 2, pp. 198–211, 2017.
View | Files available | DOI
 
[28]
2017 | Research Data | IST-REx-ID: 5560 | OA
T. Bergmiller et al., Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. IST Austria, 2017.
View | Files available | DOI
 
[27]
2017 | Research Data | IST-REx-ID: 5564 | OA
M. Steinrück and C. C. Guet, Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” IST Austria, 2017.
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 561
M. Pleska and C. C. Guet, “Effects of mutations in phage restriction sites during escape from restriction–modification,” Biology Letters, vol. 13, no. 12, 2017.
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 570 | OA
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 613 | OA
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkačik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1, 2017.
View | Files available | DOI
 
[23]
2017 | Journal Article | IST-REx-ID: 655 | OA
T. Renault et al., “Bacterial flagella grow through an injection diffusion mechanism,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 665
T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335, pp. 311–315, 2017.
View | Files available | DOI
 
[21]
2017 | Journal Article | IST-REx-ID: 704 | OA
M. Steinrück and C. C. Guet, “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 954 | OA
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 1351 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking the evolution of gene regulatory networks,” Acta Informatica, vol. 54, no. 8, pp. 765–787, 2017.
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1243
M. Pleska et al., “Bacterial autoimmunity due to a restriction-modification system,” Current Biology, vol. 26, no. 3, pp. 404–409, 2016.
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1358 | OA
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7, 2016.
View | Files available | DOI
 
[16]
2016 | Journal Article | IST-REx-ID: 1427 | OA
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3, pp. 761–769, 2016.
View | Files available | DOI
 
[15]
2016 | Conference Paper | IST-REx-ID: 1524 | OA
A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology, Madrid, Spain, 2016, vol. 9271, pp. 173–191.
View | DOI | Download Preprint (ext.)
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking gene regulatory networks,” vol. 9035. Springer, pp. 469–483, 2015.
View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Journal Article | IST-REx-ID: 2943 | OA
N. Hadizadeh Yazdi, C. C. Guet, R. Johnson, and J. Marko, “Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions,” Molecular Microbiology, vol. 86, no. 6, pp. 1318–1333, 2012.
View | DOI | Download Submitted Version (ext.)
 
[12]
2012 | Conference Paper | IST-REx-ID: 3136
C. C. Guet, A. Gupta, T. A. Henzinger, M. Mateescu, and A. Sezgin, “Delayed continuous time Markov chains for genetic regulatory circuits,” presented at the CAV: Computer Aided Verification, Berkeley, CA, USA, 2012, vol. 7358, pp. 294–309.
View | DOI
 
[11]
2011 | Journal Article | IST-REx-ID: 6496 | OA
H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching behavior of the bacterial flagellum,” Biophysical Journal, vol. 101, no. 10, pp. 2336–2340, 2011.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3748 | OA
H. Park, W. Pontius, C. C. Guet, J. Marko, T. Emonet, and P. Cluzel, “Interdependence of behavioural variability and response to small stimuli in bacteria,” Nature, vol. 468, pp. 819–823, 2010.
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3749 | OA
H. Park, C. C. Guet, T. Emonet, and P. Cluzel, “Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay,” Current Microbiology, vol. 62, no. 3, pp. 764–769, 2010.
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751 | OA
A. Kinkhabwala and C. C. Guet, “Uncovering cis regulatory codes using synthetic promoter shuffling,” PLoS One, vol. 3, no. 4, 2008.
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
C. C. Guet et al., “Minimally invasive determination of mRNA concentration in single living bacteria,” Nucleic Acids Research, vol. 36, no. 12, 2008.
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
T. Le, C. C. Guet, and P. Cluzel, “Protein expression enhancement in efflux-deleted mutant bacteria,” Protein Expression and Purification, vol. 48, no. 1, pp. 28–31, 2006.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755 | OA
T. Le, T. Emonet, S. Harlepp, C. C. Guet, and P. Cluzel, “Dynamical determinants of drug-inducible gene expression in a single bacterium,” Biophysical Journal, vol. 90, no. 9, pp. 3315–3321, 2006.
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
T. Le et al., “Real-time RNA profiling within a single bacterium,” PNAS, vol. 102, no. 26, pp. 9160–9164, 2005.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752 | OA
J. Vilar, C. C. Guet, and S. Leibler, “Modeling network dynamics: the lac operon, a case study,” Journal of Cell Biology, vol. 161, no. 3, pp. 471–476, 2003.
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
C. C. Guet, M. Elowitz, W. Hsing, and S. Leibler, “Combinatorial synthesis of genetic networks,” Science, vol. 296, no. 5572, pp. 1466–1470, 2002.
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
M. Dogterom, M. Felix, C. C. Guet, and S. Leibler, “Influence of M-phase chromatin on the anisotropy of microtubule asters,” Journal of Cell Biology, vol. 133, no. 1, pp. 125–140, 1996.
View | DOI
 

Search

Filter Publications

38 Publications

Mark all

[38]
2020 | Journal Article | IST-REx-ID: 7652 | OA
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4, pp. 612–625, 2020.
View | Files available | DOI
 
[37]
2019 | Conference Paper | IST-REx-ID: 7147
C. C. Guet, T. A. Henzinger, C. Igler, T. Petrov, and A. Sezgin, “Transient memory in gene regulation,” in 17th International Conference on Computational Methods in Systems Biology, Trieste, Italy, 2019, vol. 11773, pp. 155–187.
View | DOI
 
[36]
2019 | Journal Article | IST-REx-ID: 6784 | OA
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7, 2019.
View | Files available | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 457
M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity,” Nature Ecology and Evolution, vol. 2, no. 2, pp. 359–366, 2018.
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 503
K. Tomasek, T. Bergmiller, and C. C. Guet, “Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains,” Journal of Biotechnology, vol. 268, pp. 40–52, 2018.
View | DOI
 
[33]
2018 | Research Data | IST-REx-ID: 5585 | OA
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. IST Austria, 2018.
View | Files available | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67 | OA
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10, pp. 1633–1643, 2018.
View | Files available | DOI
 
[31]
2018 | Journal Article | IST-REx-ID: 161 | OA
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1, 2018.
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 82 | OA
W. Chaudhry et al., “Leaky resistance and the conditions for the existence of lytic bacteriophage,” PLoS Biology, vol. 16, no. 8, 2018.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 735
V. Barone et al., “An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate,” Developmental Cell, vol. 43, no. 2, pp. 198–211, 2017.
View | Files available | DOI
 
[28]
2017 | Research Data | IST-REx-ID: 5560 | OA
T. Bergmiller et al., Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. IST Austria, 2017.
View | Files available | DOI
 
[27]
2017 | Research Data | IST-REx-ID: 5564 | OA
M. Steinrück and C. C. Guet, Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” IST Austria, 2017.
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 561
M. Pleska and C. C. Guet, “Effects of mutations in phage restriction sites during escape from restriction–modification,” Biology Letters, vol. 13, no. 12, 2017.
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 570 | OA
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 613 | OA
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkačik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1, 2017.
View | Files available | DOI
 
[23]
2017 | Journal Article | IST-REx-ID: 655 | OA
T. Renault et al., “Bacterial flagella grow through an injection diffusion mechanism,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 665
T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335, pp. 311–315, 2017.
View | Files available | DOI
 
[21]
2017 | Journal Article | IST-REx-ID: 704 | OA
M. Steinrück and C. C. Guet, “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 954 | OA
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6, 2017.
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 1351 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking the evolution of gene regulatory networks,” Acta Informatica, vol. 54, no. 8, pp. 765–787, 2017.
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1243
M. Pleska et al., “Bacterial autoimmunity due to a restriction-modification system,” Current Biology, vol. 26, no. 3, pp. 404–409, 2016.
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1358 | OA
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7, 2016.
View | Files available | DOI
 
[16]
2016 | Journal Article | IST-REx-ID: 1427 | OA
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3, pp. 761–769, 2016.
View | Files available | DOI
 
[15]
2016 | Conference Paper | IST-REx-ID: 1524 | OA
A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology, Madrid, Spain, 2016, vol. 9271, pp. 173–191.
View | DOI | Download Preprint (ext.)
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking gene regulatory networks,” vol. 9035. Springer, pp. 469–483, 2015.
View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Journal Article | IST-REx-ID: 2943 | OA
N. Hadizadeh Yazdi, C. C. Guet, R. Johnson, and J. Marko, “Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions,” Molecular Microbiology, vol. 86, no. 6, pp. 1318–1333, 2012.
View | DOI | Download Submitted Version (ext.)
 
[12]
2012 | Conference Paper | IST-REx-ID: 3136
C. C. Guet, A. Gupta, T. A. Henzinger, M. Mateescu, and A. Sezgin, “Delayed continuous time Markov chains for genetic regulatory circuits,” presented at the CAV: Computer Aided Verification, Berkeley, CA, USA, 2012, vol. 7358, pp. 294–309.
View | DOI
 
[11]
2011 | Journal Article | IST-REx-ID: 6496 | OA
H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching behavior of the bacterial flagellum,” Biophysical Journal, vol. 101, no. 10, pp. 2336–2340, 2011.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3748 | OA
H. Park, W. Pontius, C. C. Guet, J. Marko, T. Emonet, and P. Cluzel, “Interdependence of behavioural variability and response to small stimuli in bacteria,” Nature, vol. 468, pp. 819–823, 2010.
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3749 | OA
H. Park, C. C. Guet, T. Emonet, and P. Cluzel, “Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay,” Current Microbiology, vol. 62, no. 3, pp. 764–769, 2010.
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751 | OA
A. Kinkhabwala and C. C. Guet, “Uncovering cis regulatory codes using synthetic promoter shuffling,” PLoS One, vol. 3, no. 4, 2008.
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
C. C. Guet et al., “Minimally invasive determination of mRNA concentration in single living bacteria,” Nucleic Acids Research, vol. 36, no. 12, 2008.
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
T. Le, C. C. Guet, and P. Cluzel, “Protein expression enhancement in efflux-deleted mutant bacteria,” Protein Expression and Purification, vol. 48, no. 1, pp. 28–31, 2006.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755 | OA
T. Le, T. Emonet, S. Harlepp, C. C. Guet, and P. Cluzel, “Dynamical determinants of drug-inducible gene expression in a single bacterium,” Biophysical Journal, vol. 90, no. 9, pp. 3315–3321, 2006.
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
T. Le et al., “Real-time RNA profiling within a single bacterium,” PNAS, vol. 102, no. 26, pp. 9160–9164, 2005.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752 | OA
J. Vilar, C. C. Guet, and S. Leibler, “Modeling network dynamics: the lac operon, a case study,” Journal of Cell Biology, vol. 161, no. 3, pp. 471–476, 2003.
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
C. C. Guet, M. Elowitz, W. Hsing, and S. Leibler, “Combinatorial synthesis of genetic networks,” Science, vol. 296, no. 5572, pp. 1466–1470, 2002.
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
M. Dogterom, M. Felix, C. C. Guet, and S. Leibler, “Influence of M-phase chromatin on the anisotropy of microtubule asters,” Journal of Cell Biology, vol. 133, no. 1, pp. 125–140, 1996.
View | DOI
 

Search

Filter Publications