38 Publications

Mark all

[38]
2020 | Journal Article | IST-REx-ID: 7652
Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 2020;4(4):612-625. doi:10.1038/s41559-020-1132-7
View | Files available | DOI
 
[37]
2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess J, Pleska M, Guet CC, Tkačik G. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 2019;15(7). doi:10.1371/journal.pcbi.1007168
View | Files available | DOI
 
[36]
2019 | Conference Paper | IST-REx-ID: 7147
Guet CC, Henzinger TA, Igler C, Petrov T, Sezgin A. Transient memory in gene regulation. In: 17th International Conference on Computational Methods in Systems Biology. Vol 11773. Springer Nature; 2019:155-187. doi:10.1007/978-3-030-31304-3_9
View | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 161 | OA
De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 2018;9(1). doi:10.1038/s41467-018-05417-9
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 457
Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2018;2(2):359-366. doi:10.1038/s41559-017-0424-z
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 2018;268:40-52. doi:10.1016/j.jbiotec.2018.01.008
View | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2018;2(10):1633-1643. doi:10.1038/s41559-018-0651-y
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria; 2018. doi:10.15479/AT:ISTA:108
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 82 | OA
Chaudhry W, Pleska M, Shah N, et al. Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. 2018;16(8). doi:10.1371/journal.pbio.2005971
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model checking the evolution of gene regulatory networks. Acta Informatica. 2017;54(8):765-787. doi:10.1007/s00236-016-0278-x
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 561
Pleska M, Guet CC. Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. 2017;13(12). doi:10.1098/rsbl.2017.0646
View | Files available | DOI
 
[27]
2017 | Journal Article | IST-REx-ID: 570 | OA
Lagator M, Sarikas S, Acar H, Bollback JP, Guet CC. Regulatory network structure determines patterns of intermolecular epistasis. eLife. 2017;6. doi:10.7554/eLife.28921
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 613 | OA
Chait RP, Ruess J, Bergmiller T, Tkačik G, Guet CC. Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. 2017;8(1). doi:10.1038/s41467-017-01683-1
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 655 | OA
Renault T, Abraham A, Bergmiller T, et al. Bacterial flagella grow through an injection diffusion mechanism. eLife. 2017;6. doi:10.7554/eLife.23136
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 2017;356(6335):311-315. doi:10.1126/science.aaf4762
View | Files available | DOI
 
[23]
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller T, Andersson AM, Tomasek K, et al. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. IST Austria; 2017. doi:doi:10.15479/AT:ISTA:53
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 704 | OA
Steinrück M, Guet CC. Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. eLife. 2017;6. doi:10.7554/eLife.25100
View | Files available | DOI
 
[21]
2017 | Research Data | IST-REx-ID: 5564 | OA
Steinrück M, Guet CC. Fastq Files for “Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.” IST Austria; 2017. doi:10.15479/AT:ISTA:65
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 735
Barone V, Lang M, Krens G, et al. An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. 2017;43(2):198-211. doi:10.1016/j.devcel.2017.09.014
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 954 | OA
Lagator M, Paixao T, Barton NH, Bollback JP, Guet CC. On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife. 2017;6. doi:10.7554/eLife.25192
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 2016;7. doi:10.1038/ncomms12307
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1243
Pleska M, Qian L, Okura R, et al. Bacterial autoimmunity due to a restriction-modification system. Current Biology. 2016;26(3):404-409. doi:10.1016/j.cub.2015.12.041
View | Files available | DOI
 
[16]
2016 | Journal Article | IST-REx-ID: 1427 | OA
Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 2016;33(3):761-769. doi:10.1093/molbev/msv269
View | Files available | DOI
 
[15]
2016 | Conference Paper | IST-REx-ID: 1524 | OA
Beica A, Guet CC, Petrov T. Efficient reduction of kappa models by static inspection of the rule-set. In: Vol 9271. Springer; 2016:173-191. doi:10.1007/978-3-319-26916-0_10
View | DOI | Download Preprint (ext.)
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model checking gene regulatory networks. 2015;9035:469-483. doi:10.1007/978-3-662-46681-0_47
View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Conference Paper | IST-REx-ID: 3136
Guet CC, Gupta A, Henzinger TA, Mateescu M, Sezgin A. Delayed continuous time Markov chains for genetic regulatory circuits. In: Vol 7358. Springer; 2012:294-309. doi:10.1007/978-3-642-31424-7_24
View | DOI
 
[12]
2012 | Journal Article | IST-REx-ID: 2943 | OA
Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 2012;86(6):1318-1333. doi:10.1111/mmi.12071
View | DOI | Download Submitted Version (ext.)
 
[11]
2011 | Journal Article | IST-REx-ID: 6496 | OA
Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 2011;101(10):2336-2340. doi:10.1016/j.bpj.2011.09.040
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3748 | OA
Park H, Pontius W, Guet CC, Marko J, Emonet T, Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 2010;468:819-823. doi:10.1038/nature09551
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3749 | OA
Park H, Guet CC, Emonet T, Cluzel P. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. 2010;62(3):764-769. doi:10.1007/s00284-010-9778-z
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751 | OA
Kinkhabwala A, Guet CC. Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. 2008;3(4). doi:10.1371/journal.pone.0002030
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
Guet CC, Bruneaux L, Min T, et al. Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. 2008;36(12). doi:10.1093/nar/gkn329
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 2006;48(1):28-31.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755 | OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 2006;90(9):3315-3321. doi:10.1529/biophysj.105.073353
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
Le T, Harlepp S, Guet CC, et al. Real-time RNA profiling within a single bacterium. PNAS. 2005;102(26):9160-9164. doi:10.1073/pnas.0503311102
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752 | OA
Vilar J, Guet CC, Leibler S. Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. 2003;161(3):471-476. doi:10.1083/jcb.200301125
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
Guet CC, Elowitz M, Hsing W, Leibler S. Combinatorial synthesis of genetic networks. Science. 2002;296(5572):1466-1470. doi:10.1126/science.1067407
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
Dogterom M, Felix M, Guet CC, Leibler S. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 1996;133(1):125-140. doi:doi: 10.1083/jcb.133.1.125
View | DOI
 

Search

Filter Publications

38 Publications

Mark all

[38]
2020 | Journal Article | IST-REx-ID: 7652
Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 2020;4(4):612-625. doi:10.1038/s41559-020-1132-7
View | Files available | DOI
 
[37]
2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess J, Pleska M, Guet CC, Tkačik G. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 2019;15(7). doi:10.1371/journal.pcbi.1007168
View | Files available | DOI
 
[36]
2019 | Conference Paper | IST-REx-ID: 7147
Guet CC, Henzinger TA, Igler C, Petrov T, Sezgin A. Transient memory in gene regulation. In: 17th International Conference on Computational Methods in Systems Biology. Vol 11773. Springer Nature; 2019:155-187. doi:10.1007/978-3-030-31304-3_9
View | DOI
 
[35]
2018 | Journal Article | IST-REx-ID: 161 | OA
De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 2018;9(1). doi:10.1038/s41467-018-05417-9
View | Files available | DOI
 
[34]
2018 | Journal Article | IST-REx-ID: 457
Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2018;2(2):359-366. doi:10.1038/s41559-017-0424-z
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 2018;268:40-52. doi:10.1016/j.jbiotec.2018.01.008
View | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2018;2(10):1633-1643. doi:10.1038/s41559-018-0651-y
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria; 2018. doi:10.15479/AT:ISTA:108
View | Files available | DOI
 
[30]
2018 | Journal Article | IST-REx-ID: 82 | OA
Chaudhry W, Pleska M, Shah N, et al. Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. 2018;16(8). doi:10.1371/journal.pbio.2005971
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model checking the evolution of gene regulatory networks. Acta Informatica. 2017;54(8):765-787. doi:10.1007/s00236-016-0278-x
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 561
Pleska M, Guet CC. Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. 2017;13(12). doi:10.1098/rsbl.2017.0646
View | Files available | DOI
 
[27]
2017 | Journal Article | IST-REx-ID: 570 | OA
Lagator M, Sarikas S, Acar H, Bollback JP, Guet CC. Regulatory network structure determines patterns of intermolecular epistasis. eLife. 2017;6. doi:10.7554/eLife.28921
View | Files available | DOI
 
[26]
2017 | Journal Article | IST-REx-ID: 613 | OA
Chait RP, Ruess J, Bergmiller T, Tkačik G, Guet CC. Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. 2017;8(1). doi:10.1038/s41467-017-01683-1
View | Files available | DOI
 
[25]
2017 | Journal Article | IST-REx-ID: 655 | OA
Renault T, Abraham A, Bergmiller T, et al. Bacterial flagella grow through an injection diffusion mechanism. eLife. 2017;6. doi:10.7554/eLife.23136
View | Files available | DOI
 
[24]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 2017;356(6335):311-315. doi:10.1126/science.aaf4762
View | Files available | DOI
 
[23]
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller T, Andersson AM, Tomasek K, et al. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. IST Austria; 2017. doi:doi:10.15479/AT:ISTA:53
View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 704 | OA
Steinrück M, Guet CC. Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. eLife. 2017;6. doi:10.7554/eLife.25100
View | Files available | DOI
 
[21]
2017 | Research Data | IST-REx-ID: 5564 | OA
Steinrück M, Guet CC. Fastq Files for “Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.” IST Austria; 2017. doi:10.15479/AT:ISTA:65
View | Files available | DOI
 
[20]
2017 | Journal Article | IST-REx-ID: 735
Barone V, Lang M, Krens G, et al. An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. 2017;43(2):198-211. doi:10.1016/j.devcel.2017.09.014
View | Files available | DOI
 
[19]
2017 | Journal Article | IST-REx-ID: 954 | OA
Lagator M, Paixao T, Barton NH, Bollback JP, Guet CC. On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife. 2017;6. doi:10.7554/eLife.25192
View | Files available | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 2016;7. doi:10.1038/ncomms12307
View | Files available | DOI
 
[17]
2016 | Journal Article | IST-REx-ID: 1243
Pleska M, Qian L, Okura R, et al. Bacterial autoimmunity due to a restriction-modification system. Current Biology. 2016;26(3):404-409. doi:10.1016/j.cub.2015.12.041
View | Files available | DOI
 
[16]
2016 | Journal Article | IST-REx-ID: 1427 | OA
Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 2016;33(3):761-769. doi:10.1093/molbev/msv269
View | Files available | DOI
 
[15]
2016 | Conference Paper | IST-REx-ID: 1524 | OA
Beica A, Guet CC, Petrov T. Efficient reduction of kappa models by static inspection of the rule-set. In: Vol 9271. Springer; 2016:173-191. doi:10.1007/978-3-319-26916-0_10
View | DOI | Download Preprint (ext.)
 
[14]
2015 | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model checking gene regulatory networks. 2015;9035:469-483. doi:10.1007/978-3-662-46681-0_47
View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Conference Paper | IST-REx-ID: 3136
Guet CC, Gupta A, Henzinger TA, Mateescu M, Sezgin A. Delayed continuous time Markov chains for genetic regulatory circuits. In: Vol 7358. Springer; 2012:294-309. doi:10.1007/978-3-642-31424-7_24
View | DOI
 
[12]
2012 | Journal Article | IST-REx-ID: 2943 | OA
Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 2012;86(6):1318-1333. doi:10.1111/mmi.12071
View | DOI | Download Submitted Version (ext.)
 
[11]
2011 | Journal Article | IST-REx-ID: 6496 | OA
Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 2011;101(10):2336-2340. doi:10.1016/j.bpj.2011.09.040
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Journal Article | IST-REx-ID: 3748 | OA
Park H, Pontius W, Guet CC, Marko J, Emonet T, Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 2010;468:819-823. doi:10.1038/nature09551
View | DOI | Download (ext.)
 
[9]
2010 | Journal Article | IST-REx-ID: 3749 | OA
Park H, Guet CC, Emonet T, Cluzel P. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. 2010;62(3):764-769. doi:10.1007/s00284-010-9778-z
View | DOI | Download (ext.)
 
[8]
2008 | Journal Article | IST-REx-ID: 3751 | OA
Kinkhabwala A, Guet CC. Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. 2008;3(4). doi:10.1371/journal.pone.0002030
View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Journal Article | IST-REx-ID: 3754
Guet CC, Bruneaux L, Min T, et al. Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. 2008;36(12). doi:10.1093/nar/gkn329
View | DOI
 
[6]
2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 2006;48(1):28-31.
View
 
[5]
2006 | Journal Article | IST-REx-ID: 3755 | OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 2006;90(9):3315-3321. doi:10.1529/biophysj.105.073353
View | DOI | Download (ext.)
 
[4]
2005 | Journal Article | IST-REx-ID: 3753
Le T, Harlepp S, Guet CC, et al. Real-time RNA profiling within a single bacterium. PNAS. 2005;102(26):9160-9164. doi:10.1073/pnas.0503311102
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3752 | OA
Vilar J, Guet CC, Leibler S. Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. 2003;161(3):471-476. doi:10.1083/jcb.200301125
View | DOI | Download (ext.)
 
[2]
2002 | Journal Article | IST-REx-ID: 3757
Guet CC, Elowitz M, Hsing W, Leibler S. Combinatorial synthesis of genetic networks. Science. 2002;296(5572):1466-1470. doi:10.1126/science.1067407
View | DOI | Download (ext.)
 
[1]
1996 | Journal Article | IST-REx-ID: 3756
Dogterom M, Felix M, Guet CC, Leibler S. Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. 1996;133(1):125-140. doi:doi: 10.1083/jcb.133.1.125
View | DOI
 

Search

Filter Publications