75 Publications

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[75]
2020 | Journal Article | IST-REx-ID: 7931 | OA
Uroshlev, L. A., Abdullaev, E. T., Umarova, I. R., Il’Icheva, I. A., Panchenko, L. A., Polozov, R. V., … Grokhovsky, S. L. (2020). A method for identification of the methylation level of CpG islands from NGS data. Scientific Reports, 10. https://doi.org/10.1038/s41598-020-65406-1
View | Files available | DOI
 
[74]
2020 | Report | IST-REx-ID: 8151
Maslov, M., Kondrashov, F., Artner, C., Hennessey-Wesen, M., Kavcic, B., Machnik, N. N., … Tomanek, I. (2020). Core Project Proceedings. IST Austria.
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[73]
2019 | Journal Article | IST-REx-ID: 6419 | OA
Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape. PLoS Genetics, 15(4). https://doi.org/10.1371/journal.pgen.1008079
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[72]
2019 | Journal Article | IST-REx-ID: 7181 | OA
Garriga, E., Di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2019). Large multiple sequence alignments with a root-to-leaf regressive method. Nature Biotechnology, 37(12), 1466–1470. https://doi.org/10.1038/s41587-019-0333-6
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[71]
2018 | Journal Article | IST-REx-ID: 279 | OA
Zapata, L., Pich, O., Serrano, L., Kondrashov, F., Ossowski, S., & Schaefer, M. (2018). Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome. Genome Biology, 19. https://doi.org/10.1186/s13059-018-1434-0
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[70]
2018 | Journal Article | IST-REx-ID: 5780 | OA
Kotlobay, A. A., Sarkisyan, K., Mokrushina, Y. A., Marcet-Houben, M., Serebrovskaya, E. O., Markina, N. M., … Yampolsky, I. V. (2018). Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences of the United States of America, 115(50), 12728–12732. https://doi.org/10.1073/pnas.1803615115
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[69]
2018 | Journal Article | IST-REx-ID: 5995 | OA
Usmanova, D. R., Bogatyreva, N. S., Ariño Bernad, J., Eremina, A. A., Gorshkova, A. A., Kanevskiy, G. M., … Ivankov, D. (2018). Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation. Bioinformatics, 34(21), 3653–3658. https://doi.org/10.1093/bioinformatics/bty340
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[68]
2016 | Journal Article | IST-REx-ID: 849
Saint Léger, A., Bello, C., Dans, P., Torres, A., Novoa, E., Camacho, N., … Ribas De Pouplana, L. (2016). Saturation of recognition elements blocks evolution of new tRNA identities. Science Advances, 2(4), e1501860–e1501860. https://doi.org/10.1126/sciadv.1501860
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[67]
2016 | Journal Article | IST-REx-ID: 850
Sarkisyan, K., Bolotin, D., Meer, M., Usmanova, D., Mishin, A., Sharonov, G., … Kondrashov, F. (2016). Local fitness landscape of the green fluorescent protein. Nature, 533, 397–401. https://doi.org/10.1038/nature17995
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[66]
2016 | Journal Article | IST-REx-ID: 853
Rivkina, E., Petrovskaya, L., Vishnivetskaya, T., Krivushin, K., Shmakova, L., Tutukina, M., … Kondrashov, F. (2016). Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. Biogeosciences, 13(7), 2207–2219. https://doi.org/10.5194/bg-13-2207-2016
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[65]
2016 | Journal Article | IST-REx-ID: 896
Howe, K., Schiffer, P., Zielinski, J., Wiehe, T., Laird, G., Marioni, J., … Leptin, M. (2016). Structure and evolutionary history of a large family of NLR proteins in the zebrafish. Open Biology, 6(4). https://doi.org/10.1098/rsob.160009
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[64]
2015 | Journal Article | IST-REx-ID: 848
Usmanova, D., Ferretti, L., Povolotskaya, I., Vlasov, P., & Kondrashov, F. (2015). A model of substitution trajectories in sequence space and long-term protein evolution. Molecular Biology and Evolution, 32(2), 542–554. https://doi.org/10.1093/molbev/msu318
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[63]
2015 | Journal Article | IST-REx-ID: 866
Kretz, C., Dai, M., Soylemez, O., Yee, A., Desch, K., Siemieniak, D., … Ginsburg, D. (2015). Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13. PNAS, 112(30), 9328–9333. https://doi.org/10.1073/pnas.1511328112
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[62]
2015 | Journal Article | IST-REx-ID: 886
Kondrashov, D., & Kondrashov, F. (2015). Topological features of rugged fitness landscapes in sequence space. Trends in Genetics, 31(1), 24–33. https://doi.org/10.1016/j.tig.2014.09.009
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[61]
2015 | Journal Article | IST-REx-ID: 906
Arkhipova, O., Meer, M., Mikoulinskaia, G., Zakharova, M., Galushko, A., Akimenko, V., & Kondrashov, F. (2015). Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer. PLoS One, 10(5). https://doi.org/10.1371/journal.pone.0125888
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[60]
2014 | Journal Article | IST-REx-ID: 845
Seplyarskiy, V., Logacheva, M., Penin, A., Baranová, M., Leushkin, E., Demidenko, N., … James, T. (2014). Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity. Molecular Biology and Evolution, 31(11), 3016–3025. https://doi.org/10.1093/molbev/msu242
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[59]
2014 | Journal Article | IST-REx-ID: 852
Rosello, O., & Kondrashov, F. (2014). Long-Term asymmetrical acceleration of protein evolution after gene duplication. Genome Biology and Evolution, 6(8), 1949–1955. https://doi.org/10.1093/gbe/evu159
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[58]
2014 | Journal Article | IST-REx-ID: 856
Pougach, K., Voet, A., Kondrashov, F., Voordeckers, K., Christiaens, J., Baying, B., … Verstrepen, K. (2014). Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network. Nature Communications, 5. https://doi.org/10.1038/ncomms5868
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[57]
2014 | Journal Article | IST-REx-ID: 863
Moroz, L., Kocot, K., Citarella, M., Dosung, S., Norekian, T., Povolotskaya, I., … Kohn, A. (2014). The ctenophore genome and the evolutionary origins of neural systems. Nature, 510(7503), 109–114. https://doi.org/10.1038/nature13400
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[56]
2014 | Journal Article | IST-REx-ID: 865
Koval, A., Vlasov, P., Shichkova, P., Khunderyakova, S., Markov, Y., Panchenko, J., … Katanaev, V. (2014). Anti leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling. Biochemical Pharmacology, 87(4), 571–578. https://doi.org/10.1016/j.bcp.2013.12.007
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[55]
2014 | Journal Article | IST-REx-ID: 892
Ivankov, D., Finkelstein, A., & Kondrashov, F. (2014). A structural perspective of compensatory evolution. Current Opinion in Structural Biology, 26(1), 104–112. https://doi.org/10.1016/j.sbi.2014.05.004
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[54]
2013 | Journal Article | IST-REx-ID: 894
Derelle, R., Kondrashov, F., Arkhipov, V., Corbel, H., Frantz, A., Gasparini, J., … Baudry, E. (2013). Color differences among feral pigeons (Columba livia) are not attributable to sequence variation in the coding region of the melanocortin-1 receptor gene MC1R. BMC Research Notes, 6(1). https://doi.org/10.1186/1756-0500-6-310
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[53]
2013 | Journal Article | IST-REx-ID: 899
Breen, M., Kemena, C., Vlasov, P., Notredame, C., & Kondrashov, F. (2013). Breen et al. reply. Nature, 497(7451), E2–E3. https://doi.org/10.1038/nature12220
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[52]
2013 | Journal Article | IST-REx-ID: 905 | OA
Arkhipov, V., Noah, T., Koschkar, S., & Kondrashov, F. (2013). Birds of Mys Shmidta, north Chukotka, Russia. Forktail, (29), 25–30.
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[51]
2012 | Journal Article | IST-REx-ID: 846
Soylemez, O., & Kondrashov, F. (2012). Estimating the rate of irreversibility in protein evolution. Genome Biology and Evolution, 4(12), 1213–1222. https://doi.org/10.1093/gbe/evs096
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[50]
2012 | Journal Article | IST-REx-ID: 858
Povolotskaya, I., Kondrashov, F., Ledda, A., & Vlasov, P. (2012). Stop codons in bacteria are not selectively equivalent. Biology Direct, 7. https://doi.org/10.1186/1745-6150-7-30
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[49]
2012 | Journal Article | IST-REx-ID: 887
Kondrashov, F. (2012). Gene duplication as a mechanism of genomic adaptation to a changing environment. Proceedings of the Royal Society of London Series B Biological Sciences, 279(1749), 5048–5057. https://doi.org/10.1098/rspb.2012.1108
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[48]
2012 | Journal Article | IST-REx-ID: 900
Breen, M., Kemena, C., Vlasov, P., Notredame, C., & Kondrashov, F. (2012). Epistasis as the primary factor in molecular evolution. Nature, 490(7421), 535–538. https://doi.org/10.1038/nature11510
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[47]
2011 | Book Chapter | IST-REx-ID: 881
Kondrashov, F. (2011). Gene Dosage and Duplication. In Evolution after Gene Duplication (pp. 57–76). Wiley-Blackwell. https://doi.org/10.1002/9780470619902.ch4
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[46]
2011 | Journal Article | IST-REx-ID: 890
Koblik, E., Red’Kin, Y., Meer, M., Derelle, R., Golenkina, S., Kondrashov, F., & Arkhipov, V. (2011). Acrocephalus orinus: A case of Mistaken identity. PLoS One, 6(4). https://doi.org/10.1371/journal.pone.0017716
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[45]
2010 | Journal Article | IST-REx-ID: 857
Povolotskaya, I., & Kondrashov, F. (2010). Sequence space and the ongoing expansion of the protein universe. Nature, 465(7300), 922–926. https://doi.org/10.1038/nature09105
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[44]
2010 | Journal Article | IST-REx-ID: 862
Meer, M., Kondrashov, A., Artzy Randrup, Y., & Kondrashov, F. (2010). Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness. Nature, 464(7286), 279–282. https://doi.org/10.1038/nature08691
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[43]
2010 | Journal Article | IST-REx-ID: 872
Kondrashov, F., & Kondrashov, A. (2010). Measurements of spontaneous rates of mutations in the recent past and the near future. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 365(1544), 1169–1176. https://doi.org/10.1098/rstb.2009.0286
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[42]
2010 | Journal Article | IST-REx-ID: 884
Kondrashov, A., Povolotskaya, I., Ivankov, D., & Kondrashov, F. (2010). Rate of sequence divergence under constant selection. Biology Direct, 5. https://doi.org/10.1186/1745-6150-5-5
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[41]
2010 | Journal Article | IST-REx-ID: 891
Innan, H., & Kondrashov, F. (2010). The evolution of gene duplications: Classifying and distinguishing between models. Nature Reviews Genetics, 11(2), 97–108. https://doi.org/10.1038/nrg2689
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[40]
2010 | Journal Article | IST-REx-ID: 901
Breen, M., & Kondrashov, F. (2010). Mitochondrial pathogenic mutations are population-specific. Biology Direct, 5. https://doi.org/10.1186/1745-6150-5-68
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[39]
2009 | Journal Article | IST-REx-ID: 908
Alkalaeva, E., Eliseev, B., Ambrogelly, A., Vlasov, P., Kondrashov, F., Gundllapalli, S., … Kisselev, L. (2009). Translation termination in pyrrolysine-utilizing archaea. FEBS Letters, 583(21), 3455–3460. https://doi.org/10.1016/j.febslet.2009.09.044
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[38]
2008 | Journal Article | IST-REx-ID: 844
Schmidt, S., Gerasimova, A., Kondrashov, F., Adzuhbei, I., Kondrashov, A., & Sunyaev, S. (2008). Hypermutable non-synonymous sites are under stronger negative selection. PLoS Genetics, 4(11). https://doi.org/10.1371/journal.pgen.1000281
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[37]
2008 | Journal Article | IST-REx-ID: 895
Donaldson, Z., Kondrashov, F., Putnam, A., Bai, Y., Stoinski, T., Hammock, E., & Young, L. (2008). Evolution of a behavior-linked microsatellite-containing element in the 5′ flanking region of the primate AVPR1A gene. BMC Evolutionary Biology, 8(1). https://doi.org/10.1186/1471-2148-8-180
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[36]
2008 | Journal Article | IST-REx-ID: 907
Assis, R., Kondrashov, A., Koonin, E., & Kondrashov, F. (2008). Nested genes and increasing organizational complexity of metazoan genomes. Trends in Genetics, 24(10), 475–478. https://doi.org/10.1016/j.tig.2008.08.003
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[35]
2007 | Journal Article | IST-REx-ID: 860
Plotnikova, O., Kondrashov, F., Vlasov, P., Grigorenko, A., Ginter, E., & Rogaev, E. (2007). Conversion and compensatory evolution of the γ-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state. American Journal of Human Genetics, 81(1), 32–43. https://doi.org/10.1086/518616
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[34]
2007 | Journal Article | IST-REx-ID: 861
Popadin, K., Mamirova, L., & Kondrashov, F. (2007). A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures. BMC Bioinformatics, 8. https://doi.org/10.1186/1471-2105-8-441
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[33]
2007 | Journal Article | IST-REx-ID: 879
Kondrashov, F., Gurbich, T., & Vlasov, P. (2007). Selection for functional uniformity of tuf duplicates in γ-proteobacteria. Trends in Genetics, 23(5), 215–218. https://doi.org/10.1016/j.tig.2007.03.002
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[32]
2007 | Journal Article | IST-REx-ID: 904
Bazykin, G., Kondrashov, F., Brudno, M., Poliakov, A., Dubchak, I., & Kondrashov, A. (2007). Extensive parallelism in protein evolution. Biology Direct, 2. https://doi.org/10.1186/1745-6150-2-20
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[31]
2006 | Journal Article | IST-REx-ID: 854
Rogaev, E., Moliaka, Y., Malyarchuk, B., Kondrashov, F., Derenko, M., Chumakov, I., & Grigorenko, A. (2006). Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius. PLoS Biology, 4(3), 0403–0410. https://doi.org/10.1371/journal.pbio.0040073
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[30]
2006 | Journal Article | IST-REx-ID: 868
Kondrashov, F., Koonin, E., Morgunov, I., Finogenova, T., & Kondrashova, M. (2006). Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation. Biology Direct, 1. https://doi.org/10.1186/1745-6150-1-31
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[29]
2006 | Journal Article | IST-REx-ID: 869
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2006). Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. Journal of Theoretical Biology, 240(4), 616–626. https://doi.org/10.1016/j.jtbi.2005.10.020
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[28]
2006 | Journal Article | IST-REx-ID: 873
Kondrashov, F., & Kondrashov, A. (2006). Role of selection in fixation of gene duplications. Journal of Theoretical Biology, 239(2), 141–151. https://doi.org/10.1016/j.jtbi.2005.08.033
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[27]
2006 | Journal Article | IST-REx-ID: 903
Babenko, V., Basu, M., Kondrashov, F., Rogozin, I., & Koonin, E. (2006). Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. BMC Cancer, 6. https://doi.org/10.1186/1471-2407-6-36
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[26]
2005 | Journal Article | IST-REx-ID: 843
Yampolsky, L., Kondrashov, F., & Kondrashov, A. (2005). Distribution of the strength of selection against amino acid replacements in human proteins. Human Molecular Genetics, 14(21), 3191–3201. https://doi.org/10.1093/hmg/ddi350
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[25]
2005 | Journal Article | IST-REx-ID: 877
Kondrashov, F. (2005). The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution. Biofizika, 50(3), 389–395.
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[24]
2005 | Journal Article | IST-REx-ID: 878
Kondrashov, F. (2005). In search of the limits of evolution. Nature Genetics, 37(1), 9–10. https://doi.org/10.1038/ng0105-9
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[23]
2005 | Journal Article | IST-REx-ID: 880
Kondrashov, F. (2005). The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus. Biofizika, 50(3), 396–403.
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[22]
2005 | Journal Article | IST-REx-ID: 882
Kondrashov, F. (2005). Prediction of pathogenic mutations in mitochondrially encoded human tRNAs. Human Molecular Genetics, 14(16), 2415–2419. https://doi.org/10.1093/hmg/ddi243
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[21]
2005 | Journal Article | IST-REx-ID: 893
Jordan, I., Kondrashov, F., Adzhubeǐ, I., Wolf, Y., Koonin, E., Kondrashov, A., & Sunyaev, S. (2005). A universal trend of amino acid gain and loss in protein evolution. Nature, 433(7026), 633–638. https://doi.org/10.1038/nature03306
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[20]
2004 | Journal Article | IST-REx-ID: 864
Panchenko, A., Kondrashov, F., & Bryant, S. (2004). Prediction of functional sites by analysis of sequence and structure conservation. Protein Science, 13(4), 884–892. https://doi.org/10.1110/ps.03465504
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[19]
2004 | Journal Article | IST-REx-ID: 870
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2004). Bioinformatical assay of human gene morbidity. Nucleic Acids Research, 32(5), 1731–1737. https://doi.org/10.1093/nar/gkh330
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[18]
2004 | Journal Article | IST-REx-ID: 875
Kondrashov, F., & Koonin, E. (2004). A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends in Genetics, 20(7), 287–291. https://doi.org/10.1016/j.tig.2004.05.001
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[17]
2004 | Journal Article | IST-REx-ID: 889
Kern, A., & Kondrashov, F. (2004). Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs. Nature Genetics, 36(11), 1207–1212. https://doi.org/10.1038/ng1451
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[16]
2004 | Journal Article | IST-REx-ID: 898
Bazykin, G., Kondrashov, F., Ogurtsov, A., Sunyaev, S., & Kondrashov, A. (2004). Positive selection at sites of multiple amino acid replacements since rat-mouse divergence. Nature, 429(6991), 558–562. https://doi.org/10.1038/nature02601
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[15]
2004 | Journal Article | IST-REx-ID: 902
Castillo Davis, C., Kondrashov, F., Hartl, D., & Kulathinal, R. (2004). The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Research, 14(5), 802–811. https://doi.org/10.1101/gr.2195604
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[14]
2003 | Journal Article | IST-REx-ID: 847
Sunyaev, S., Kondrashov, F., Bork, P., & Ramensky, V. (2003). Impact of selection, mutation rate and genetic drift on human genetic variation. Human Molecular Genetics, 12(24), 3325–3330. https://doi.org/10.1093/hmg/ddg359
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[13]
2003 | Journal Article | IST-REx-ID: 876
Kondrashov, F., & Koonin, E. (2003). Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences. Trends in Genetics, 19(3), 115–119. https://doi.org/10.1016/S0168-9525(02)00029-X
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[12]
2002 | Journal Article | IST-REx-ID: 859
Perelygin, A., Kondrashov, F., Rogozin, I., & Brinton, M. (2002). Evolution of the mouse polyubiquitin C gene. Journal of Molecular Evolution, 55(2), 202–210. https://doi.org/10.1007/s00239-002-2318-0
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[11]
2002 | Journal Article | IST-REx-ID: 871
Kondrashov, F., Rogozin, I., Wolf, Y., & Koonin, E. (2002). Selection in the evolution of gene duplications . Genome Biology, 3(2). https://doi.org/10.1186/gb-2002-3-2-research0008
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[10]
2002 | Journal Article | IST-REx-ID: 885
Kondrashov, A., Sunyaev, S., & Kondrashov, F. (2002). Dobzhansky-Muller incompatibilities in protein evolution. PNAS, 99(23), 14878–14883. https://doi.org/10.1073/pnas.232565499
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[9]
2002 | Journal Article | IST-REx-ID: 897
Castillo Davis, C., Mekhedov, S., Hartl, D., Koonin, E., & Kondrashov, F. (2002). Selection for short introns in highly expressed genes. Nature Genetics, 31(4), 415–418. https://doi.org/10.1038/ng940
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[8]
2001 | Journal Article | IST-REx-ID: 841
Wolf, Y., Kondrashov, F., & Koonin, E. (2001). Footprints of primordial introns on the eukaryotic genome: still no clear traces . Trends in Genetics, 17(9), 499–501. https://doi.org/10.1016/S0168-9525(01)02376-9
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[7]
2001 | Journal Article | IST-REx-ID: 851
Rogozin, I., Kondrashov, F., & Glazko, G. (2001). Use of mutation spectra analysis software. Human Mutation, 17(2), 83–102. https://doi.org/10.1002/1098-1004(200102)17:2<83::AID-HUMU1>3.0.CO;2-E
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[6]
2001 | Journal Article | IST-REx-ID: 855
Rogozin, I., Kochetov, A., Kondrashov, F., Koonin, E., & Milanesi, L. (2001). Presence of ATG triplets in 5′ untranslated regions of eukaryotic cDNAs correlates with a ’weak’context of the start codon. Bioinformatics, 17(10), 890–900. https://doi.org/10.1093/bioinformatics/17.10.890
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[5]
2001 | Journal Article | IST-REx-ID: 867
Kondrashov, F., & Koonin, E. (2001). Origin of alternative splicing by tandem exon duplication. Human Molecular Genetics, 10(23), 2661–2669. https://doi.org/10.1093/hmg/10.23.2661
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[4]
2001 | Journal Article | IST-REx-ID: 874
Kondrashov, F., & Kondrashov, A. (2001). Multidimensional epistasis and the disadvantage of sex. PNAS, 98(21), 12089–12092. https://doi.org/10.1073/pnas.211214298
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[3]
2001 | Journal Article | IST-REx-ID: 888
Jordan, I., Kondrashov, F., Rogozin, I., Tatusov, R., Wolf, Y., & Koonin, E. (2001). Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins . Genome Biology, 2(12). https://doi.org/10.1186/gb-2001-2-12-research0053
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[2]
2000 | Journal Article | IST-REx-ID: 842
Wolf, Y., Kondrashov, F., & Koonin, E. (2000). No footprints of primordial introns in a eukaryotic genome. Trends in Genetics, 16(8), 333–334. https://doi.org/10.1016/S0168-9525(00)02059-X
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[1]
1999 | Journal Article | IST-REx-ID: 883
Kondrashov, A., & Kondrashov, F. (1999). Interactions among quantitative traits in the course of sympatric speciation. Nature, 400(6742), 351–354. https://doi.org/10.1038/22514
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[75]
2020 | Journal Article | IST-REx-ID: 7931 | OA
Uroshlev, L. A., Abdullaev, E. T., Umarova, I. R., Il’Icheva, I. A., Panchenko, L. A., Polozov, R. V., … Grokhovsky, S. L. (2020). A method for identification of the methylation level of CpG islands from NGS data. Scientific Reports, 10. https://doi.org/10.1038/s41598-020-65406-1
View | Files available | DOI
 
[74]
2020 | Report | IST-REx-ID: 8151
Maslov, M., Kondrashov, F., Artner, C., Hennessey-Wesen, M., Kavcic, B., Machnik, N. N., … Tomanek, I. (2020). Core Project Proceedings. IST Austria.
View | Files available
 
[73]
2019 | Journal Article | IST-REx-ID: 6419 | OA
Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape. PLoS Genetics, 15(4). https://doi.org/10.1371/journal.pgen.1008079
View | Files available | DOI
 
[72]
2019 | Journal Article | IST-REx-ID: 7181 | OA
Garriga, E., Di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2019). Large multiple sequence alignments with a root-to-leaf regressive method. Nature Biotechnology, 37(12), 1466–1470. https://doi.org/10.1038/s41587-019-0333-6
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[71]
2018 | Journal Article | IST-REx-ID: 279 | OA
Zapata, L., Pich, O., Serrano, L., Kondrashov, F., Ossowski, S., & Schaefer, M. (2018). Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome. Genome Biology, 19. https://doi.org/10.1186/s13059-018-1434-0
View | Files available | DOI
 
[70]
2018 | Journal Article | IST-REx-ID: 5780 | OA
Kotlobay, A. A., Sarkisyan, K., Mokrushina, Y. A., Marcet-Houben, M., Serebrovskaya, E. O., Markina, N. M., … Yampolsky, I. V. (2018). Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences of the United States of America, 115(50), 12728–12732. https://doi.org/10.1073/pnas.1803615115
View | Files available | DOI
 
[69]
2018 | Journal Article | IST-REx-ID: 5995 | OA
Usmanova, D. R., Bogatyreva, N. S., Ariño Bernad, J., Eremina, A. A., Gorshkova, A. A., Kanevskiy, G. M., … Ivankov, D. (2018). Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation. Bioinformatics, 34(21), 3653–3658. https://doi.org/10.1093/bioinformatics/bty340
View | Files available | DOI | PubMed | Europe PMC
 
[68]
2016 | Journal Article | IST-REx-ID: 849
Saint Léger, A., Bello, C., Dans, P., Torres, A., Novoa, E., Camacho, N., … Ribas De Pouplana, L. (2016). Saturation of recognition elements blocks evolution of new tRNA identities. Science Advances, 2(4), e1501860–e1501860. https://doi.org/10.1126/sciadv.1501860
View | DOI
 
[67]
2016 | Journal Article | IST-REx-ID: 850
Sarkisyan, K., Bolotin, D., Meer, M., Usmanova, D., Mishin, A., Sharonov, G., … Kondrashov, F. (2016). Local fitness landscape of the green fluorescent protein. Nature, 533, 397–401. https://doi.org/10.1038/nature17995
View | DOI
 
[66]
2016 | Journal Article | IST-REx-ID: 853
Rivkina, E., Petrovskaya, L., Vishnivetskaya, T., Krivushin, K., Shmakova, L., Tutukina, M., … Kondrashov, F. (2016). Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. Biogeosciences, 13(7), 2207–2219. https://doi.org/10.5194/bg-13-2207-2016
View | DOI
 
[65]
2016 | Journal Article | IST-REx-ID: 896
Howe, K., Schiffer, P., Zielinski, J., Wiehe, T., Laird, G., Marioni, J., … Leptin, M. (2016). Structure and evolutionary history of a large family of NLR proteins in the zebrafish. Open Biology, 6(4). https://doi.org/10.1098/rsob.160009
View | DOI
 
[64]
2015 | Journal Article | IST-REx-ID: 848
Usmanova, D., Ferretti, L., Povolotskaya, I., Vlasov, P., & Kondrashov, F. (2015). A model of substitution trajectories in sequence space and long-term protein evolution. Molecular Biology and Evolution, 32(2), 542–554. https://doi.org/10.1093/molbev/msu318
View | DOI
 
[63]
2015 | Journal Article | IST-REx-ID: 866
Kretz, C., Dai, M., Soylemez, O., Yee, A., Desch, K., Siemieniak, D., … Ginsburg, D. (2015). Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13. PNAS, 112(30), 9328–9333. https://doi.org/10.1073/pnas.1511328112
View | DOI
 
[62]
2015 | Journal Article | IST-REx-ID: 886
Kondrashov, D., & Kondrashov, F. (2015). Topological features of rugged fitness landscapes in sequence space. Trends in Genetics, 31(1), 24–33. https://doi.org/10.1016/j.tig.2014.09.009
View | DOI
 
[61]
2015 | Journal Article | IST-REx-ID: 906
Arkhipova, O., Meer, M., Mikoulinskaia, G., Zakharova, M., Galushko, A., Akimenko, V., & Kondrashov, F. (2015). Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer. PLoS One, 10(5). https://doi.org/10.1371/journal.pone.0125888
View | DOI
 
[60]
2014 | Journal Article | IST-REx-ID: 845
Seplyarskiy, V., Logacheva, M., Penin, A., Baranová, M., Leushkin, E., Demidenko, N., … James, T. (2014). Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity. Molecular Biology and Evolution, 31(11), 3016–3025. https://doi.org/10.1093/molbev/msu242
View | DOI
 
[59]
2014 | Journal Article | IST-REx-ID: 852
Rosello, O., & Kondrashov, F. (2014). Long-Term asymmetrical acceleration of protein evolution after gene duplication. Genome Biology and Evolution, 6(8), 1949–1955. https://doi.org/10.1093/gbe/evu159
View | DOI
 
[58]
2014 | Journal Article | IST-REx-ID: 856
Pougach, K., Voet, A., Kondrashov, F., Voordeckers, K., Christiaens, J., Baying, B., … Verstrepen, K. (2014). Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network. Nature Communications, 5. https://doi.org/10.1038/ncomms5868
View | DOI
 
[57]
2014 | Journal Article | IST-REx-ID: 863
Moroz, L., Kocot, K., Citarella, M., Dosung, S., Norekian, T., Povolotskaya, I., … Kohn, A. (2014). The ctenophore genome and the evolutionary origins of neural systems. Nature, 510(7503), 109–114. https://doi.org/10.1038/nature13400
View | DOI
 
[56]
2014 | Journal Article | IST-REx-ID: 865
Koval, A., Vlasov, P., Shichkova, P., Khunderyakova, S., Markov, Y., Panchenko, J., … Katanaev, V. (2014). Anti leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling. Biochemical Pharmacology, 87(4), 571–578. https://doi.org/10.1016/j.bcp.2013.12.007
View | DOI
 
[55]
2014 | Journal Article | IST-REx-ID: 892
Ivankov, D., Finkelstein, A., & Kondrashov, F. (2014). A structural perspective of compensatory evolution. Current Opinion in Structural Biology, 26(1), 104–112. https://doi.org/10.1016/j.sbi.2014.05.004
View | DOI
 
[54]
2013 | Journal Article | IST-REx-ID: 894
Derelle, R., Kondrashov, F., Arkhipov, V., Corbel, H., Frantz, A., Gasparini, J., … Baudry, E. (2013). Color differences among feral pigeons (Columba livia) are not attributable to sequence variation in the coding region of the melanocortin-1 receptor gene MC1R. BMC Research Notes, 6(1). https://doi.org/10.1186/1756-0500-6-310
View | DOI
 
[53]
2013 | Journal Article | IST-REx-ID: 899
Breen, M., Kemena, C., Vlasov, P., Notredame, C., & Kondrashov, F. (2013). Breen et al. reply. Nature, 497(7451), E2–E3. https://doi.org/10.1038/nature12220
View | DOI
 
[52]
2013 | Journal Article | IST-REx-ID: 905 | OA
Arkhipov, V., Noah, T., Koschkar, S., & Kondrashov, F. (2013). Birds of Mys Shmidta, north Chukotka, Russia. Forktail, (29), 25–30.
View | Download (ext.)
 
[51]
2012 | Journal Article | IST-REx-ID: 846
Soylemez, O., & Kondrashov, F. (2012). Estimating the rate of irreversibility in protein evolution. Genome Biology and Evolution, 4(12), 1213–1222. https://doi.org/10.1093/gbe/evs096
View | DOI
 
[50]
2012 | Journal Article | IST-REx-ID: 858
Povolotskaya, I., Kondrashov, F., Ledda, A., & Vlasov, P. (2012). Stop codons in bacteria are not selectively equivalent. Biology Direct, 7. https://doi.org/10.1186/1745-6150-7-30
View | DOI
 
[49]
2012 | Journal Article | IST-REx-ID: 887
Kondrashov, F. (2012). Gene duplication as a mechanism of genomic adaptation to a changing environment. Proceedings of the Royal Society of London Series B Biological Sciences, 279(1749), 5048–5057. https://doi.org/10.1098/rspb.2012.1108
View | DOI
 
[48]
2012 | Journal Article | IST-REx-ID: 900
Breen, M., Kemena, C., Vlasov, P., Notredame, C., & Kondrashov, F. (2012). Epistasis as the primary factor in molecular evolution. Nature, 490(7421), 535–538. https://doi.org/10.1038/nature11510
View | DOI
 
[47]
2011 | Book Chapter | IST-REx-ID: 881
Kondrashov, F. (2011). Gene Dosage and Duplication. In Evolution after Gene Duplication (pp. 57–76). Wiley-Blackwell. https://doi.org/10.1002/9780470619902.ch4
View | DOI
 
[46]
2011 | Journal Article | IST-REx-ID: 890
Koblik, E., Red’Kin, Y., Meer, M., Derelle, R., Golenkina, S., Kondrashov, F., & Arkhipov, V. (2011). Acrocephalus orinus: A case of Mistaken identity. PLoS One, 6(4). https://doi.org/10.1371/journal.pone.0017716
View | DOI
 
[45]
2010 | Journal Article | IST-REx-ID: 857
Povolotskaya, I., & Kondrashov, F. (2010). Sequence space and the ongoing expansion of the protein universe. Nature, 465(7300), 922–926. https://doi.org/10.1038/nature09105
View | DOI
 
[44]
2010 | Journal Article | IST-REx-ID: 862
Meer, M., Kondrashov, A., Artzy Randrup, Y., & Kondrashov, F. (2010). Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness. Nature, 464(7286), 279–282. https://doi.org/10.1038/nature08691
View | DOI
 
[43]
2010 | Journal Article | IST-REx-ID: 872
Kondrashov, F., & Kondrashov, A. (2010). Measurements of spontaneous rates of mutations in the recent past and the near future. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 365(1544), 1169–1176. https://doi.org/10.1098/rstb.2009.0286
View | DOI
 
[42]
2010 | Journal Article | IST-REx-ID: 884
Kondrashov, A., Povolotskaya, I., Ivankov, D., & Kondrashov, F. (2010). Rate of sequence divergence under constant selection. Biology Direct, 5. https://doi.org/10.1186/1745-6150-5-5
View | DOI
 
[41]
2010 | Journal Article | IST-REx-ID: 891
Innan, H., & Kondrashov, F. (2010). The evolution of gene duplications: Classifying and distinguishing between models. Nature Reviews Genetics, 11(2), 97–108. https://doi.org/10.1038/nrg2689
View | DOI
 
[40]
2010 | Journal Article | IST-REx-ID: 901
Breen, M., & Kondrashov, F. (2010). Mitochondrial pathogenic mutations are population-specific. Biology Direct, 5. https://doi.org/10.1186/1745-6150-5-68
View | DOI
 
[39]
2009 | Journal Article | IST-REx-ID: 908
Alkalaeva, E., Eliseev, B., Ambrogelly, A., Vlasov, P., Kondrashov, F., Gundllapalli, S., … Kisselev, L. (2009). Translation termination in pyrrolysine-utilizing archaea. FEBS Letters, 583(21), 3455–3460. https://doi.org/10.1016/j.febslet.2009.09.044
View | DOI
 
[38]
2008 | Journal Article | IST-REx-ID: 844
Schmidt, S., Gerasimova, A., Kondrashov, F., Adzuhbei, I., Kondrashov, A., & Sunyaev, S. (2008). Hypermutable non-synonymous sites are under stronger negative selection. PLoS Genetics, 4(11). https://doi.org/10.1371/journal.pgen.1000281
View | DOI
 
[37]
2008 | Journal Article | IST-REx-ID: 895
Donaldson, Z., Kondrashov, F., Putnam, A., Bai, Y., Stoinski, T., Hammock, E., & Young, L. (2008). Evolution of a behavior-linked microsatellite-containing element in the 5′ flanking region of the primate AVPR1A gene. BMC Evolutionary Biology, 8(1). https://doi.org/10.1186/1471-2148-8-180
View | DOI
 
[36]
2008 | Journal Article | IST-REx-ID: 907
Assis, R., Kondrashov, A., Koonin, E., & Kondrashov, F. (2008). Nested genes and increasing organizational complexity of metazoan genomes. Trends in Genetics, 24(10), 475–478. https://doi.org/10.1016/j.tig.2008.08.003
View | DOI
 
[35]
2007 | Journal Article | IST-REx-ID: 860
Plotnikova, O., Kondrashov, F., Vlasov, P., Grigorenko, A., Ginter, E., & Rogaev, E. (2007). Conversion and compensatory evolution of the γ-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state. American Journal of Human Genetics, 81(1), 32–43. https://doi.org/10.1086/518616
View | DOI
 
[34]
2007 | Journal Article | IST-REx-ID: 861
Popadin, K., Mamirova, L., & Kondrashov, F. (2007). A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures. BMC Bioinformatics, 8. https://doi.org/10.1186/1471-2105-8-441
View | DOI
 
[33]
2007 | Journal Article | IST-REx-ID: 879
Kondrashov, F., Gurbich, T., & Vlasov, P. (2007). Selection for functional uniformity of tuf duplicates in γ-proteobacteria. Trends in Genetics, 23(5), 215–218. https://doi.org/10.1016/j.tig.2007.03.002
View | DOI
 
[32]
2007 | Journal Article | IST-REx-ID: 904
Bazykin, G., Kondrashov, F., Brudno, M., Poliakov, A., Dubchak, I., & Kondrashov, A. (2007). Extensive parallelism in protein evolution. Biology Direct, 2. https://doi.org/10.1186/1745-6150-2-20
View | DOI
 
[31]
2006 | Journal Article | IST-REx-ID: 854
Rogaev, E., Moliaka, Y., Malyarchuk, B., Kondrashov, F., Derenko, M., Chumakov, I., & Grigorenko, A. (2006). Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius. PLoS Biology, 4(3), 0403–0410. https://doi.org/10.1371/journal.pbio.0040073
View | DOI
 
[30]
2006 | Journal Article | IST-REx-ID: 868
Kondrashov, F., Koonin, E., Morgunov, I., Finogenova, T., & Kondrashova, M. (2006). Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation. Biology Direct, 1. https://doi.org/10.1186/1745-6150-1-31
View | DOI
 
[29]
2006 | Journal Article | IST-REx-ID: 869
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2006). Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. Journal of Theoretical Biology, 240(4), 616–626. https://doi.org/10.1016/j.jtbi.2005.10.020
View | DOI
 
[28]
2006 | Journal Article | IST-REx-ID: 873
Kondrashov, F., & Kondrashov, A. (2006). Role of selection in fixation of gene duplications. Journal of Theoretical Biology, 239(2), 141–151. https://doi.org/10.1016/j.jtbi.2005.08.033
View | DOI
 
[27]
2006 | Journal Article | IST-REx-ID: 903
Babenko, V., Basu, M., Kondrashov, F., Rogozin, I., & Koonin, E. (2006). Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. BMC Cancer, 6. https://doi.org/10.1186/1471-2407-6-36
View | DOI
 
[26]
2005 | Journal Article | IST-REx-ID: 843
Yampolsky, L., Kondrashov, F., & Kondrashov, A. (2005). Distribution of the strength of selection against amino acid replacements in human proteins. Human Molecular Genetics, 14(21), 3191–3201. https://doi.org/10.1093/hmg/ddi350
View | DOI
 
[25]
2005 | Journal Article | IST-REx-ID: 877
Kondrashov, F. (2005). The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution. Biofizika, 50(3), 389–395.
View | Download None (ext.) | PubMed | Europe PMC
 
[24]
2005 | Journal Article | IST-REx-ID: 878
Kondrashov, F. (2005). In search of the limits of evolution. Nature Genetics, 37(1), 9–10. https://doi.org/10.1038/ng0105-9
View | DOI
 
[23]
2005 | Journal Article | IST-REx-ID: 880
Kondrashov, F. (2005). The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus. Biofizika, 50(3), 396–403.
View | Download None (ext.) | PubMed | Europe PMC
 
[22]
2005 | Journal Article | IST-REx-ID: 882
Kondrashov, F. (2005). Prediction of pathogenic mutations in mitochondrially encoded human tRNAs. Human Molecular Genetics, 14(16), 2415–2419. https://doi.org/10.1093/hmg/ddi243
View | DOI
 
[21]
2005 | Journal Article | IST-REx-ID: 893
Jordan, I., Kondrashov, F., Adzhubeǐ, I., Wolf, Y., Koonin, E., Kondrashov, A., & Sunyaev, S. (2005). A universal trend of amino acid gain and loss in protein evolution. Nature, 433(7026), 633–638. https://doi.org/10.1038/nature03306
View | DOI
 
[20]
2004 | Journal Article | IST-REx-ID: 864
Panchenko, A., Kondrashov, F., & Bryant, S. (2004). Prediction of functional sites by analysis of sequence and structure conservation. Protein Science, 13(4), 884–892. https://doi.org/10.1110/ps.03465504
View | DOI
 
[19]
2004 | Journal Article | IST-REx-ID: 870
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2004). Bioinformatical assay of human gene morbidity. Nucleic Acids Research, 32(5), 1731–1737. https://doi.org/10.1093/nar/gkh330
View | DOI
 
[18]
2004 | Journal Article | IST-REx-ID: 875
Kondrashov, F., & Koonin, E. (2004). A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends in Genetics, 20(7), 287–291. https://doi.org/10.1016/j.tig.2004.05.001
View | DOI
 
[17]
2004 | Journal Article | IST-REx-ID: 889
Kern, A., & Kondrashov, F. (2004). Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs. Nature Genetics, 36(11), 1207–1212. https://doi.org/10.1038/ng1451
View | DOI
 
[16]
2004 | Journal Article | IST-REx-ID: 898
Bazykin, G., Kondrashov, F., Ogurtsov, A., Sunyaev, S., & Kondrashov, A. (2004). Positive selection at sites of multiple amino acid replacements since rat-mouse divergence. Nature, 429(6991), 558–562. https://doi.org/10.1038/nature02601
View | DOI
 
[15]
2004 | Journal Article | IST-REx-ID: 902
Castillo Davis, C., Kondrashov, F., Hartl, D., & Kulathinal, R. (2004). The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Research, 14(5), 802–811. https://doi.org/10.1101/gr.2195604
View | DOI
 
[14]
2003 | Journal Article | IST-REx-ID: 847
Sunyaev, S., Kondrashov, F., Bork, P., & Ramensky, V. (2003). Impact of selection, mutation rate and genetic drift on human genetic variation. Human Molecular Genetics, 12(24), 3325–3330. https://doi.org/10.1093/hmg/ddg359
View | DOI
 
[13]
2003 | Journal Article | IST-REx-ID: 876
Kondrashov, F., & Koonin, E. (2003). Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences. Trends in Genetics, 19(3), 115–119. https://doi.org/10.1016/S0168-9525(02)00029-X
View | DOI
 
[12]
2002 | Journal Article | IST-REx-ID: 859
Perelygin, A., Kondrashov, F., Rogozin, I., & Brinton, M. (2002). Evolution of the mouse polyubiquitin C gene. Journal of Molecular Evolution, 55(2), 202–210. https://doi.org/10.1007/s00239-002-2318-0
View | DOI
 
[11]
2002 | Journal Article | IST-REx-ID: 871
Kondrashov, F., Rogozin, I., Wolf, Y., & Koonin, E. (2002). Selection in the evolution of gene duplications . Genome Biology, 3(2). https://doi.org/10.1186/gb-2002-3-2-research0008
View | DOI
 
[10]
2002 | Journal Article | IST-REx-ID: 885
Kondrashov, A., Sunyaev, S., & Kondrashov, F. (2002). Dobzhansky-Muller incompatibilities in protein evolution. PNAS, 99(23), 14878–14883. https://doi.org/10.1073/pnas.232565499
View | DOI
 
[9]
2002 | Journal Article | IST-REx-ID: 897
Castillo Davis, C., Mekhedov, S., Hartl, D., Koonin, E., & Kondrashov, F. (2002). Selection for short introns in highly expressed genes. Nature Genetics, 31(4), 415–418. https://doi.org/10.1038/ng940
View | DOI
 
[8]
2001 | Journal Article | IST-REx-ID: 841
Wolf, Y., Kondrashov, F., & Koonin, E. (2001). Footprints of primordial introns on the eukaryotic genome: still no clear traces . Trends in Genetics, 17(9), 499–501. https://doi.org/10.1016/S0168-9525(01)02376-9
View | DOI
 
[7]
2001 | Journal Article | IST-REx-ID: 851
Rogozin, I., Kondrashov, F., & Glazko, G. (2001). Use of mutation spectra analysis software. Human Mutation, 17(2), 83–102. https://doi.org/10.1002/1098-1004(200102)17:2<83::AID-HUMU1>3.0.CO;2-E
View | DOI
 
[6]
2001 | Journal Article | IST-REx-ID: 855
Rogozin, I., Kochetov, A., Kondrashov, F., Koonin, E., & Milanesi, L. (2001). Presence of ATG triplets in 5′ untranslated regions of eukaryotic cDNAs correlates with a ’weak’context of the start codon. Bioinformatics, 17(10), 890–900. https://doi.org/10.1093/bioinformatics/17.10.890
View | DOI
 
[5]
2001 | Journal Article | IST-REx-ID: 867
Kondrashov, F., & Koonin, E. (2001). Origin of alternative splicing by tandem exon duplication. Human Molecular Genetics, 10(23), 2661–2669. https://doi.org/10.1093/hmg/10.23.2661
View | DOI
 
[4]
2001 | Journal Article | IST-REx-ID: 874
Kondrashov, F., & Kondrashov, A. (2001). Multidimensional epistasis and the disadvantage of sex. PNAS, 98(21), 12089–12092. https://doi.org/10.1073/pnas.211214298
View | DOI
 
[3]
2001 | Journal Article | IST-REx-ID: 888
Jordan, I., Kondrashov, F., Rogozin, I., Tatusov, R., Wolf, Y., & Koonin, E. (2001). Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins . Genome Biology, 2(12). https://doi.org/10.1186/gb-2001-2-12-research0053
View | DOI
 
[2]
2000 | Journal Article | IST-REx-ID: 842
Wolf, Y., Kondrashov, F., & Koonin, E. (2000). No footprints of primordial introns in a eukaryotic genome. Trends in Genetics, 16(8), 333–334. https://doi.org/10.1016/S0168-9525(00)02059-X
View | DOI
 
[1]
1999 | Journal Article | IST-REx-ID: 883
Kondrashov, A., & Kondrashov, F. (1999). Interactions among quantitative traits in the course of sympatric speciation. Nature, 400(6742), 351–354. https://doi.org/10.1038/22514
View | DOI
 

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