Tobias Bollenbach

Bollenbach Group

38 Publications

Mark all

[38]
2021 | Journal Article | IST-REx-ID: 8997 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” PLOS Computational Biology, vol. 17. Public Library of Science, 2021.
View | Files available | DOI
 
[37]
2021 | Journal Article | IST-REx-ID: 10271 | OA
Q. Qi, S. A. Angermayr, and M. T. Bollenbach, “Uncovering Key Metabolic Determinants of the Drug Interactions Between Trimethoprim and Erythromycin in Escherichia coli,” Frontiers in Microbiology, vol. 12. Frontiers Media SA, 2021.
View | Files available | DOI | PubMed | Europe PMC
 
[36]
2020 | Journal Article | IST-REx-ID: 8037 | OA
M. Lukacisinova, B. Fernando, and M. T. Bollenbach, “Highly parallel lab evolution reveals that epistasis can curb the evolution of antibiotic resistance,” Nature Communications, vol. 11. Springer Nature, 2020.
View | Files available | DOI
 
[35]
2020 | Journal Article | IST-REx-ID: 8250 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Mechanisms of drug interactions between translation-inhibiting antibiotics,” Nature Communications, vol. 11. Springer Nature, 2020.
View | Files available | DOI
 
[34]
2020 | Preprint | IST-REx-ID: 7673 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “A minimal biophysical model of combined antibiotic action,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
View | Files available | DOI | Download Preprint (ext.)
 
[33]
2019 | Journal Article | IST-REx-ID: 7026 | OA
M. Lukacisin and M. T. Bollenbach, “Emergent gene expression responses to drug combinations predict higher-order drug interactions,” Cell Systems, vol. 9, no. 5. Cell Press, pp. 423-433.e1-e3, 2019.
View | Files available | DOI
 
[32]
2019 | Journal Article | IST-REx-ID: 6046 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Temporal order and precision of complex stress responses in individual bacteria,” Molecular systems biology, vol. 15, no. 2. Embo Press, 2019.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[31]
2017 | Journal Article | IST-REx-ID: 822 | OA
M. de Vos, M. P. Zagórski, A. Mcnally, and M. T. Bollenbach, “Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections,” PNAS, vol. 114, no. 40. National Academy of Sciences, pp. 10666–10671, 2017.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[30]
2017 | Journal Article | IST-REx-ID: 666 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment,” Cell Systems, vol. 4, no. 4. Cell Press, pp. 393–403, 2017.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 674
J. Schwarz et al., “Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6,” Current Biology, vol. 27, no. 9. Cell Press, pp. 1314–1325, 2017.
View | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 1027 | OA
M. Lukacisinova and M. T. Bollenbach, “Toward a quantitative understanding of antibiotic resistance evolution,” Current Opinion in Biotechnology, vol. 46. Elsevier, pp. 90–97, 2017.
View | Files available | DOI
 
[27]
2016 | Journal Article | IST-REx-ID: 1154 | OA
J. Schwarz et al., “A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients,” Scientific Reports, vol. 6. Nature Publishing Group, 2016.
View | Files available | DOI
 
[26]
2015 | Journal Article | IST-REx-ID: 1581
M. T. Bollenbach and C.-P. J. Heisenberg, “Gradients are shaping up,” Cell, vol. 161, no. 3. Cell Press, pp. 431–432, 2015.
View | DOI
 
[25]
2015 | Journal Article | IST-REx-ID: 1810 | OA
M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution,” Current Opinion in Microbiology, vol. 27. Elsevier, pp. 1–9, 2015.
View | Files available | DOI
 
[24]
2015 | Journal Article | IST-REx-ID: 1823 | OA
G. Chevereau and M. T. Bollenbach, “Systematic discovery of drug interaction mechanisms,” Molecular Systems Biology, vol. 11, no. 4. Nature Publishing Group, 2015.
View | Files available | DOI
 
[23]
2015 | Journal Article | IST-REx-ID: 1509 | OA
J. Michalko, M. Lukacisinova, M. T. Bollenbach, and J. Friml, “Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene,” F1000 Research , vol. 4. F1000 Research Ltd. , 2015.
View | Files available | DOI
 
[22]
2015 | Research Data Reference | IST-REx-ID: 9711
G. Chevereau et al., “Excel file containing the raw data for all figures.” Public Library of Science, 2015.
View | Files available | DOI
 
[21]
2015 | Research Data Reference | IST-REx-ID: 9765
G. Chevereau et al., “Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs.” Public Library of Science, 2015.
View | Files available | DOI
 
[20]
2015 | Journal Article | IST-REx-ID: 1619 | OA
G. Chevereau et al., “Quantifying the determinants of evolutionary dynamics leading to drug resistance,” PLoS Biology, vol. 13, no. 11. Public Library of Science, 2015.
View | Files available | DOI
 
[19]
2014 | Journal Article | IST-REx-ID: 2001
K. Mitosch and M. T. Bollenbach, “Bacterial responses to antibiotics and their combinations,” Environmental Microbiology Reports, vol. 6, no. 6. Wiley, pp. 545–557, 2014.
View | Files available | DOI
 
[18]
2014 | Journal Article | IST-REx-ID: 2040 | OA
A. Kicheva et al., “Coordination of progenitor specification and growth in mouse and chick spinal cord,” Science, vol. 345, no. 6204. American Association for the Advancement of Science, 2014.
View | DOI | Download Submitted Version (ext.)
 
[17]
2014 | Journal Article | IST-REx-ID: 2220 | OA
M. de Vos and M. T. Bollenbach, “Suppressive drug interactions between antifungals,” Chemistry and Biology, vol. 21, no. 4. Cell Press, pp. 439–440, 2014.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2013 | Journal Article | IST-REx-ID: 2839 | OA
M. Weber et al., “Interstitial dendritic cell guidance by haptotactic chemokine gradients,” Science, vol. 339, no. 6117. American Association for the Advancement of Science, pp. 328–332, 2013.
View | DOI | Download Published Version (ext.)
 
[15]
2012 | Journal Article | IST-REx-ID: 2970
A. Kicheva, M. T. Bollenbach, O. Wartlick, F. Julicher, and M. Gonzalez Gaitan, “Investigating the principles of morphogen gradient formation: from tissues to cells,” Current Opinion in Genetics & Development, vol. 22, no. 6. Elsevier, pp. 527–532, 2012.
View | DOI
 
[14]
2012 | Journal Article | IST-REx-ID: 3160
P. Pantazis and M. T. Bollenbach, “Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo,” Cell Cycle, vol. 11, no. 11. Taylor and Francis, pp. 2055–2058, 2012.
View | DOI
 
[13]
2011 | Journal Article | IST-REx-ID: 3376 | OA
M. T. Bollenbach and R. Kishony, “Resolution of gene regulatory conflicts caused by combinations of antibiotics,” Molecular Cell, vol. 42, no. 4. Cell Press, pp. 413–425, 2011.
View | DOI | Download Submitted Version (ext.)
 
[12]
2011 | Journal Article | IST-REx-ID: 3429
N. Plachta, M. T. Bollenbach, S. Pease, S. Fraser, and P. Pantazis, “Oct4 kinetics predict cell lineage patterning in the early mammalian embryo,” Nature Cell Biology, vol. 13, no. 2. Nature Publishing Group, pp. 117–123, 2011.
View | DOI
 
[11]
2009 | Journal Article | IST-REx-ID: 3398
M. T. Bollenbach and R. Kishony, “Quiet gene circuit more fragile than its noisy peer,” Cell, vol. 139, no. 3. Cell Press, pp. 460–461, 2009.
View | DOI
 
[10]
2009 | Journal Article | IST-REx-ID: 3428
M. T. Bollenbach and R. Kishony, “Hydroxyurea triggers cellular responses that actively cause bacterial cell death,” Molecular Cell, vol. 36, no. 5. Cell Press, pp. 728–729, 2009.
View | DOI
 
[9]
2009 | Journal Article | IST-REx-ID: 4223
J. Swoboda et al., “Discovery of a Small Molecule that Blocks Wall Teichoic Acid Biosynthesis in Staphylococcus aureus,” ACS Chemical Biology, vol. 4, no. 10. American Chemical Society, pp. 875–883, 2009.
View | DOI | Download None (ext.)
 
[8]
2007 | Journal Article | IST-REx-ID: 3427 | OA
M. T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, and F. Julicher, “Morphogen transport in epithelia,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 75, no. 1. American Institute of Physics, 2007.
View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2007 | Journal Article | IST-REx-ID: 4225
M. T. Bollenbach, K. Vetsigian, and R. Kishony, “Evolution and multilevel optimization of the genetic code,” Genome Research, vol. 17, no. 4. Cold Spring Harbor Laboratory Press, pp. 401–404, 2007.
View | DOI
 
[6]
2005 | Journal Article | IST-REx-ID: 3426 | OA
M. T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, and F. Jülicher, “Robust formation of morphogen gradients,” Physical Review Letters, vol. 94, no. 1. American Physical Society, 2005.
View | DOI | Download Preprint (ext.) | arXiv
 
[5]
2004 | Journal Article | IST-REx-ID: 4224
K. Kruse, P. Pantazis, M. T. Bollenbach, F. Julicher, and M. Gonzalez Gaitan, “Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model,” Development, vol. 131, no. 19. Company of Biologists, pp. 4843–4856, 2004.
View | DOI
 
[4]
2003 | Conference Paper | IST-REx-ID: 3425
M. T. Bollenbach, T. Strother, and W. Bauer, “3D supernova collapse calculations,” presented at the NATO ASI on Structure and Dynamics of Elementary Matter, 2003, vol. 166, pp. 277–288.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3797
W. Bauer, M. Kleine Berkenbusch, and M. T. Bollenbach, “Breaking atomic nuclei into little pieces: evidence for a phase transition,” Revista Mexicana De Fisica, vol. 49, no. 4. Sociedad Mexicana de Física, pp. 1–6, 2003.
View
 
[2]
2002 | Conference Paper | IST-REx-ID: 3423
W. Bauer, M. T. Bollenbach, M. Kleine Berkenbusch, and H. Harreis, “The percolation interpretation of the nuclear fragmentation phase transition,” presented at the Winter Workshop on Nuclear Dynamics, 2002, pp. 111–118.
View
 
[1]
2002 | Conference Paper | IST-REx-ID: 3424
M. T. Bollenbach and W. Bauer, “3d supernovae collapse calculations,” presented at the CRIS: Catania Relativistic Ion Studies , 2002, vol. 644, pp. 219–232.
View | DOI
 
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38 Publications

Mark all

[38]
2021 | Journal Article | IST-REx-ID: 8997 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” PLOS Computational Biology, vol. 17. Public Library of Science, 2021.
View | Files available | DOI
 
[37]
2021 | Journal Article | IST-REx-ID: 10271 | OA
Q. Qi, S. A. Angermayr, and M. T. Bollenbach, “Uncovering Key Metabolic Determinants of the Drug Interactions Between Trimethoprim and Erythromycin in Escherichia coli,” Frontiers in Microbiology, vol. 12. Frontiers Media SA, 2021.
View | Files available | DOI | PubMed | Europe PMC
 
[36]
2020 | Journal Article | IST-REx-ID: 8037 | OA
M. Lukacisinova, B. Fernando, and M. T. Bollenbach, “Highly parallel lab evolution reveals that epistasis can curb the evolution of antibiotic resistance,” Nature Communications, vol. 11. Springer Nature, 2020.
View | Files available | DOI
 
[35]
2020 | Journal Article | IST-REx-ID: 8250 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Mechanisms of drug interactions between translation-inhibiting antibiotics,” Nature Communications, vol. 11. Springer Nature, 2020.
View | Files available | DOI
 
[34]
2020 | Preprint | IST-REx-ID: 7673 | OA
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “A minimal biophysical model of combined antibiotic action,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
View | Files available | DOI | Download Preprint (ext.)
 
[33]
2019 | Journal Article | IST-REx-ID: 7026 | OA
M. Lukacisin and M. T. Bollenbach, “Emergent gene expression responses to drug combinations predict higher-order drug interactions,” Cell Systems, vol. 9, no. 5. Cell Press, pp. 423-433.e1-e3, 2019.
View | Files available | DOI
 
[32]
2019 | Journal Article | IST-REx-ID: 6046 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Temporal order and precision of complex stress responses in individual bacteria,” Molecular systems biology, vol. 15, no. 2. Embo Press, 2019.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[31]
2017 | Journal Article | IST-REx-ID: 822 | OA
M. de Vos, M. P. Zagórski, A. Mcnally, and M. T. Bollenbach, “Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections,” PNAS, vol. 114, no. 40. National Academy of Sciences, pp. 10666–10671, 2017.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[30]
2017 | Journal Article | IST-REx-ID: 666 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment,” Cell Systems, vol. 4, no. 4. Cell Press, pp. 393–403, 2017.
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 674
J. Schwarz et al., “Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6,” Current Biology, vol. 27, no. 9. Cell Press, pp. 1314–1325, 2017.
View | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 1027 | OA
M. Lukacisinova and M. T. Bollenbach, “Toward a quantitative understanding of antibiotic resistance evolution,” Current Opinion in Biotechnology, vol. 46. Elsevier, pp. 90–97, 2017.
View | Files available | DOI
 
[27]
2016 | Journal Article | IST-REx-ID: 1154 | OA
J. Schwarz et al., “A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients,” Scientific Reports, vol. 6. Nature Publishing Group, 2016.
View | Files available | DOI
 
[26]
2015 | Journal Article | IST-REx-ID: 1581
M. T. Bollenbach and C.-P. J. Heisenberg, “Gradients are shaping up,” Cell, vol. 161, no. 3. Cell Press, pp. 431–432, 2015.
View | DOI
 
[25]
2015 | Journal Article | IST-REx-ID: 1810 | OA
M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution,” Current Opinion in Microbiology, vol. 27. Elsevier, pp. 1–9, 2015.
View | Files available | DOI
 
[24]
2015 | Journal Article | IST-REx-ID: 1823 | OA
G. Chevereau and M. T. Bollenbach, “Systematic discovery of drug interaction mechanisms,” Molecular Systems Biology, vol. 11, no. 4. Nature Publishing Group, 2015.
View | Files available | DOI
 
[23]
2015 | Journal Article | IST-REx-ID: 1509 | OA
J. Michalko, M. Lukacisinova, M. T. Bollenbach, and J. Friml, “Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene,” F1000 Research , vol. 4. F1000 Research Ltd. , 2015.
View | Files available | DOI
 
[22]
2015 | Research Data Reference | IST-REx-ID: 9711
G. Chevereau et al., “Excel file containing the raw data for all figures.” Public Library of Science, 2015.
View | Files available | DOI
 
[21]
2015 | Research Data Reference | IST-REx-ID: 9765
G. Chevereau et al., “Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs.” Public Library of Science, 2015.
View | Files available | DOI
 
[20]
2015 | Journal Article | IST-REx-ID: 1619 | OA
G. Chevereau et al., “Quantifying the determinants of evolutionary dynamics leading to drug resistance,” PLoS Biology, vol. 13, no. 11. Public Library of Science, 2015.
View | Files available | DOI
 
[19]
2014 | Journal Article | IST-REx-ID: 2001
K. Mitosch and M. T. Bollenbach, “Bacterial responses to antibiotics and their combinations,” Environmental Microbiology Reports, vol. 6, no. 6. Wiley, pp. 545–557, 2014.
View | Files available | DOI
 
[18]
2014 | Journal Article | IST-REx-ID: 2040 | OA
A. Kicheva et al., “Coordination of progenitor specification and growth in mouse and chick spinal cord,” Science, vol. 345, no. 6204. American Association for the Advancement of Science, 2014.
View | DOI | Download Submitted Version (ext.)
 
[17]
2014 | Journal Article | IST-REx-ID: 2220 | OA
M. de Vos and M. T. Bollenbach, “Suppressive drug interactions between antifungals,” Chemistry and Biology, vol. 21, no. 4. Cell Press, pp. 439–440, 2014.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2013 | Journal Article | IST-REx-ID: 2839 | OA
M. Weber et al., “Interstitial dendritic cell guidance by haptotactic chemokine gradients,” Science, vol. 339, no. 6117. American Association for the Advancement of Science, pp. 328–332, 2013.
View | DOI | Download Published Version (ext.)
 
[15]
2012 | Journal Article | IST-REx-ID: 2970
A. Kicheva, M. T. Bollenbach, O. Wartlick, F. Julicher, and M. Gonzalez Gaitan, “Investigating the principles of morphogen gradient formation: from tissues to cells,” Current Opinion in Genetics & Development, vol. 22, no. 6. Elsevier, pp. 527–532, 2012.
View | DOI
 
[14]
2012 | Journal Article | IST-REx-ID: 3160
P. Pantazis and M. T. Bollenbach, “Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo,” Cell Cycle, vol. 11, no. 11. Taylor and Francis, pp. 2055–2058, 2012.
View | DOI
 
[13]
2011 | Journal Article | IST-REx-ID: 3376 | OA
M. T. Bollenbach and R. Kishony, “Resolution of gene regulatory conflicts caused by combinations of antibiotics,” Molecular Cell, vol. 42, no. 4. Cell Press, pp. 413–425, 2011.
View | DOI | Download Submitted Version (ext.)
 
[12]
2011 | Journal Article | IST-REx-ID: 3429
N. Plachta, M. T. Bollenbach, S. Pease, S. Fraser, and P. Pantazis, “Oct4 kinetics predict cell lineage patterning in the early mammalian embryo,” Nature Cell Biology, vol. 13, no. 2. Nature Publishing Group, pp. 117–123, 2011.
View | DOI
 
[11]
2009 | Journal Article | IST-REx-ID: 3398
M. T. Bollenbach and R. Kishony, “Quiet gene circuit more fragile than its noisy peer,” Cell, vol. 139, no. 3. Cell Press, pp. 460–461, 2009.
View | DOI
 
[10]
2009 | Journal Article | IST-REx-ID: 3428
M. T. Bollenbach and R. Kishony, “Hydroxyurea triggers cellular responses that actively cause bacterial cell death,” Molecular Cell, vol. 36, no. 5. Cell Press, pp. 728–729, 2009.
View | DOI
 
[9]
2009 | Journal Article | IST-REx-ID: 4223
J. Swoboda et al., “Discovery of a Small Molecule that Blocks Wall Teichoic Acid Biosynthesis in Staphylococcus aureus,” ACS Chemical Biology, vol. 4, no. 10. American Chemical Society, pp. 875–883, 2009.
View | DOI | Download None (ext.)
 
[8]
2007 | Journal Article | IST-REx-ID: 3427 | OA
M. T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, and F. Julicher, “Morphogen transport in epithelia,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 75, no. 1. American Institute of Physics, 2007.
View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2007 | Journal Article | IST-REx-ID: 4225
M. T. Bollenbach, K. Vetsigian, and R. Kishony, “Evolution and multilevel optimization of the genetic code,” Genome Research, vol. 17, no. 4. Cold Spring Harbor Laboratory Press, pp. 401–404, 2007.
View | DOI
 
[6]
2005 | Journal Article | IST-REx-ID: 3426 | OA
M. T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, and F. Jülicher, “Robust formation of morphogen gradients,” Physical Review Letters, vol. 94, no. 1. American Physical Society, 2005.
View | DOI | Download Preprint (ext.) | arXiv
 
[5]
2004 | Journal Article | IST-REx-ID: 4224
K. Kruse, P. Pantazis, M. T. Bollenbach, F. Julicher, and M. Gonzalez Gaitan, “Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model,” Development, vol. 131, no. 19. Company of Biologists, pp. 4843–4856, 2004.
View | DOI
 
[4]
2003 | Conference Paper | IST-REx-ID: 3425
M. T. Bollenbach, T. Strother, and W. Bauer, “3D supernova collapse calculations,” presented at the NATO ASI on Structure and Dynamics of Elementary Matter, 2003, vol. 166, pp. 277–288.
View | DOI
 
[3]
2003 | Journal Article | IST-REx-ID: 3797
W. Bauer, M. Kleine Berkenbusch, and M. T. Bollenbach, “Breaking atomic nuclei into little pieces: evidence for a phase transition,” Revista Mexicana De Fisica, vol. 49, no. 4. Sociedad Mexicana de Física, pp. 1–6, 2003.
View
 
[2]
2002 | Conference Paper | IST-REx-ID: 3423
W. Bauer, M. T. Bollenbach, M. Kleine Berkenbusch, and H. Harreis, “The percolation interpretation of the nuclear fragmentation phase transition,” presented at the Winter Workshop on Nuclear Dynamics, 2002, pp. 111–118.
View
 
[1]
2002 | Conference Paper | IST-REx-ID: 3424
M. T. Bollenbach and W. Bauer, “3d supernovae collapse calculations,” presented at the CRIS: Catania Relativistic Ion Studies , 2002, vol. 644, pp. 219–232.
View | DOI
 
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