Gasper Tkacik
Tkacik Group
106 Publications
2023 | Journal Article | IST-REx-ID: 13127 |
B. E. Casillas Perez, K. Bodova, A. V. Grasse, G. Tkačik, and S. Cremer, “Dynamic pathogen detection and social feedback shape collective hygiene in ants,” Nature Communications, vol. 14. Springer Nature, 2023.
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2023 | Journal Article | IST-REx-ID: 12762 |
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain,” Nature Computational Science, vol. 3. Springer Nature, pp. 254–263, 2023.
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2023 | Journal Article | IST-REx-ID: 14515 |
M. Reinhardt, G. Tkačik, and P. R. Ten Wolde, “Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories,” Physical Review X, vol. 13, no. 4. American Physical Society, 2023.
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2023 | Journal Article | IST-REx-ID: 14656 |
M. Nardin, J. L. Csicsvari, G. Tkačik, and C. Savin, “The structure of hippocampal CA1 interactions optimizes spatial coding across experience,” The Journal of Neuroscience, vol. 43, no. 48. Society of Neuroscience, pp. 8140–8156, 2023.
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2022 | Journal Article | IST-REx-ID: 12156 |
B. Zoller, T. Gregor, and G. Tkačik, “Eukaryotic gene regulation at equilibrium, or non?,” Current Opinion in Systems Biology, vol. 31, no. 9. Elsevier, 2022.
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2022 | Journal Article | IST-REx-ID: 10736 |
M. Lagator et al., “Predicting bacterial promoter function and evolution from random sequences,” eLife, vol. 11. eLife Sciences Publications, 2022.
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2022 | Journal Article | IST-REx-ID: 12332 |
W. F. Mlynarski and G. Tkačik, “Efficient coding theory of dynamic attentional modulation,” PLoS Biology, vol. 20, no. 12. Public Library of Science, p. e3001889, 2022.
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2022 | Journal Article | IST-REx-ID: 12081 |
M. Hledik, N. H. Barton, and G. Tkačik, “Accumulation and maintenance of information in evolution,” Proceedings of the National Academy of Sciences, vol. 119, no. 36. Proceedings of the National Academy of Sciences, 2022.
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2021 | Preprint | IST-REx-ID: 10912 |
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Quantifying the coexistence of neuronal oscillations and avalanches.” arXiv.
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2021 | Preprint | IST-REx-ID: 10579 |
B. Kavcic and G. Tkačik, “Token-driven totally asymmetric simple exclusion process,” arXiv. .
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2021 | Journal Article | IST-REx-ID: 9226 |
G. Tkačik and T. Gregor, “The many bits of positional information,” Development, vol. 148, no. 2. The Company of Biologists, 2021.
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2021 | Journal Article | IST-REx-ID: 9362 |
M. J. Chalk, G. Tkačik, and O. Marre, “Inferring the function performed by a recurrent neural network,” PLoS ONE, vol. 16, no. 4. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 8997 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” PLOS Computational Biology, vol. 17. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 7553 |
W. F. Mlynarski, M. Hledik, T. R. Sokolowski, and G. Tkačik, “Statistical analysis and optimality of neural systems,” Neuron, vol. 109, no. 7. Cell Press, p. 1227–1241.e5, 2021.
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2021 | Preprint | IST-REx-ID: 10077 |
M. Nardin, J. L. Csicsvari, G. Tkačik, and C. Savin, “The structure of hippocampal CA1 interactions optimizes spatial coding across experience,” bioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7656 |
M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle for population codes,” Frontiers in Computational Neuroscience, vol. 14. Frontiers, 2020.
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2020 | Journal Article | IST-REx-ID: 8698 |
O. Maoz, G. Tkačik, M. S. Esteki, R. Kiani, and E. Schneidman, “Learning probabilistic neural representations with randomly connected circuits,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40. National Academy of Sciences, pp. 25066–25073, 2020.
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2020 | Journal Article | IST-REx-ID: 9000 |
R. Grah, B. Zoller, and G. Tkačik, “Nonequilibrium models of optimal enhancer function,” PNAS, vol. 117, no. 50. National Academy of Sciences, pp. 31614–31622, 2020.
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2020 | Preprint | IST-REx-ID: 7675 |
R. Grah, B. Zoller, and G. Tkačik, “Normative models of enhancer function,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 8250 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Mechanisms of drug interactions between translation-inhibiting antibiotics,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Preprint | IST-REx-ID: 7673 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “A minimal biophysical model of combined antibiotic action,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7652 |
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4. Springer Nature, pp. 612–625, 2020.
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2019 | Preprint | IST-REx-ID: 7552 |
W. Bialek, T. Gregor, and G. Tkačik, “Action at a distance in transcriptional regulation,” arXiv:1912.08579. ArXiv.
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| arXiv
2019 | Journal Article | IST-REx-ID: 5945 |
M. D. Petkova, G. Tkačik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” Cell, vol. 176, no. 4. Cell Press, p. 844–855.e15, 2019.
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2019 | Journal Article | IST-REx-ID: 6784 |
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7. Public Library of Science, 2019.
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2019 | Research Data Reference | IST-REx-ID: 9786
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Supporting text and results.” Public Library of Science, 2019.
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2019 | Journal Article | IST-REx-ID: 6900 |
S. A. Cepeda Humerez, J. Ruess, and G. Tkačik, “Estimating information in time-varying signals,” PLoS computational biology, vol. 15, no. 9. Public Library of Science, p. e1007290, 2019.
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2019 | Conference Paper | IST-REx-ID: 7606 |
M. Hledik, T. R. Sokolowski, and G. Tkačik, “A tight upper bound on mutual information,” in IEEE Information Theory Workshop, ITW 2019, Visby, Sweden, 2019.
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2018 | Journal Article | IST-REx-ID: 281 |
A. Granados, J. Pietsch, S. A. Cepeda Humerez, I. Farquhar, G. Tkačik, and P. Swain, “Distributed and dynamic intracellular organization of extracellular information,” PNAS, vol. 115, no. 23. National Academy of Sciences, pp. 6088–6093, 2018.
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2018 | Journal Article | IST-REx-ID: 406 |
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkačik, “Probabilistic models of individual and collective animal behavior,” PLoS One, vol. 13, no. 3. Public Library of Science, 2018.
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2018 | Research Data Reference | IST-REx-ID: 9831
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkačik, “Implementation of the inference method in Matlab.” Public Library of Science, 2018.
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2018 | Journal Article | IST-REx-ID: 31 |
U. Ferrari, S. Deny, M. J. Chalk, G. Tkačik, O. Marre, and T. Mora, “Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons,” Physical Review E, vol. 98, no. 4. American Physical Society, 2018.
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2018 | Journal Article | IST-REx-ID: 543 |
M. J. Chalk, O. Marre, and G. Tkačik, “Toward a unified theory of efficient, predictive, and sparse coding,” PNAS, vol. 115, no. 1. National Academy of Sciences, pp. 186–191, 2018.
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2018 | Journal Article | IST-REx-ID: 292 |
V. Botella Soler, S. Deny, G. S. Martius, O. Marre, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina,” PLoS Computational Biology, vol. 14, no. 5. Public Library of Science, 2018.
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2018 | Research Data | IST-REx-ID: 5584 |
S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina.” Institute of Science and Technology Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 161 |
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1. Springer Nature, 2018.
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2018 | Research Data | IST-REx-ID: 5587 |
D. De Martino and G. Tkačik, “Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 67 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10. Nature Publishing Group, pp. 1633–1643, 2018.
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2018 | Research Data | IST-REx-ID: 5585 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring.” Institute of Science and Technology Austria, 2018.
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2017 | Journal Article | IST-REx-ID: 613 |
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkačik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 720 |
J. Humplik and G. Tkačik, “Probabilistic models for neural populations that naturally capture global coupling and criticality,” PLoS Computational Biology, vol. 13, no. 9. Public Library of Science, 2017.
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2017 | Journal Article | IST-REx-ID: 725 |
R. Harpaz, G. Tkačik, and E. Schneidman, “Discrete modes of social information processing predict individual behavior of fish in a group,” PNAS, vol. 114, no. 38. National Academy of Sciences, pp. 10149–10154, 2017.
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2017 | Research Data Reference | IST-REx-ID: 9709 |
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, and M. Berry, “Data from: Error-robust modes of the retinal population code.” Dryad, 2017.
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2017 | Journal Article | IST-REx-ID: 1104 |
S. Deny et al., “Multiplexed computations in retinal ganglion cells of a single type,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 955 |
T. Friedlander, R. Prizak, N. H. Barton, and G. Tkačik, “Evolution of new regulatory functions on biophysically realistic fitness landscapes,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 943 |
M. P. Zagórski et al., “Decoding of position in the developing neural tube from antiparallel morphogen gradients,” Science, vol. 356, no. 6345. American Association for the Advancement of Science, pp. 1379–1383, 2017.
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2017 | Research Data | IST-REx-ID: 5562 |
O. Marre, G. Tkačik, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Multi-electrode array recording from salamander retinal ganglion cells.” Institute of Science and Technology Austria, 2017.
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2017 | Research Data | IST-REx-ID: 5560 |
T. Bergmiller et al., “Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science and Technology Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 665
T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335. American Association for the Advancement of Science, pp. 311–315, 2017.
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2016 | Conference Paper | IST-REx-ID: 1082 |
M. J. Chalk, O. Marre, and G. Tkačik, “Relevant sparse codes with variational information bottleneck,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain, 2016, vol. 29, pp. 1965–1973.
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2016 | Conference Paper | IST-REx-ID: 1105
C. Savin and G. Tkačik, “Estimating nonlinear neural response functions using GP priors and Kronecker methods,” presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain, 2016, vol. 29, pp. 3610–3618.
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2016 | Journal Article | IST-REx-ID: 1171
G. Tkačik, “Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al.,” Physics of Life Reviews, vol. 17. Elsevier, pp. 166–167, 2016.
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2016 | Journal Article | IST-REx-ID: 1242 |
T. R. Sokolowski, A. Walczak, W. Bialek, and G. Tkačik, “Extending the dynamic range of transcription factor action by translational regulation,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 93, no. 2. American Institute of Physics, 2016.
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2016 | Journal Article | IST-REx-ID: 1248 |
G. Tkačik and W. Bialek, “Information processing in living systems,” Annual Review of Condensed Matter Physics, vol. 7. Annual Reviews, pp. 89–117, 2016.
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2016 | Journal Article | IST-REx-ID: 1420 |
K. Bodova, G. Tkačik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4. Genetics Society of America, pp. 1523–1548, 2016.
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| arXiv
2016 | Journal Article | IST-REx-ID: 1197 |
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, and M. Berry, “Error-robust modes of the retinal population code,” PLoS Computational Biology, vol. 12, no. 11. Public Library of Science, 2016.
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2016 | Journal Article | IST-REx-ID: 1270 |
P. Hillenbrand, U. Gerland, and G. Tkačik, “Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information,” PLoS One, vol. 11, no. 9. Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9870
P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in an Ising model.” Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9869
P. Hillenbrand, U. Gerland, and G. Tkačik, “Error bound on an estimator of position.” Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9871
P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in a discrete morphogen field.” Public Library of Science, 2016.
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2016 | Journal Article | IST-REx-ID: 1358 |
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7. Nature Publishing Group, 2016.
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2015 | Journal Article | IST-REx-ID: 1697 |
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1701 |
G. Tkačik et al., “Thermodynamics and signatures of criticality in a network of neurons,” PNAS, vol. 112, no. 37. National Academy of Sciences, pp. 11508–11513, 2015.
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2015 | Journal Article | IST-REx-ID: 1885 |
G. Tkačik, J. Dubuis, M. Petkova, and T. Gregor, “Positional information, positional error, and readout precision in morphogenesis: A mathematical framework,” Genetics, vol. 199, no. 1. Genetics Society of America, pp. 39–59, 2015.
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2015 | Journal Article | IST-REx-ID: 1940 |
T. R. Sokolowski and G. Tkačik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6. American Institute of Physics, 2015.
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2015 | Research Data Reference | IST-REx-ID: 9712
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Other fitness models for comparison & for interacting TFBSs.” Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1666 |
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1576 |
S. A. Cepeda Humerez, G. Rieckh, and G. Tkačik, “Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation,” Physical Review Letters, vol. 115, no. 24. American Physical Society, 2015.
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2014 | Journal Article | IST-REx-ID: 1886 |
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, and G. Tkačik, “Variance predicts salience in central sensory processing,” eLife, no. November. eLife Sciences Publications, 2014.
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2014 | Journal Article | IST-REx-ID: 2231 |
G. Rieckh and G. Tkačik, “Noise and information transmission in promoters with multiple internal states,” Biophysical Journal, vol. 106, no. 5. Biophysical Society, pp. 1194–1204, 2014.
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2014 | Journal Article | IST-REx-ID: 3263 |
G. Tkačik, A. Ghosh, E. Schneidman, and R. Segev, “Adaptation to changes in higher-order stimulus statistics in the salamander retina,” PLoS One, vol. 9, no. 1. Public Library of Science, 2014.
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2014 | Research Data Reference | IST-REx-ID: 9752 |
K. Simmons et al., “Data from: Transformation of stimulus correlations by the retina.” Dryad, 2014.
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2014 | Journal Article | IST-REx-ID: 2257 |
G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Searching for collective behavior in a large network of sensory neurons,” PLoS Computational Biology, vol. 10, no. 1. Public Library of Science, 2014.
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2013 | Journal Article | IST-REx-ID: 2818 |
K. Rajan, O. Marre, and G. Tkačik, “Learning quadratic receptive fields from neural responses to natural stimuli,” Neural Computation, vol. 25, no. 7. MIT Press , pp. 1661–1692, 2013.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2850 |
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, and W. Bialek, “The simplest maximum entropy model for collective behavior in a neural network,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 3. IOP Publishing Ltd., 2013.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2863 |
E. Granot Atedgi, G. Tkačik, R. Segev, and E. Schneidman, “Stimulus-dependent maximum entropy models of neural population codes,” PLoS Computational Biology, vol. 9, no. 3. Public Library of Science, 2013.
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2013 | Journal Article | IST-REx-ID: 2913 |
G. Tkačik, E. Granot Atedgi, R. Segev, and E. Schneidman, “Retinal metric: a stimulus distance measure derived from population neural responses,” Physical Review Letters, vol. 110, no. 5. American Physical Society, 2013.
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2013 | Journal Article | IST-REx-ID: 3261 |
J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional information, in bits,” PNAS, vol. 110, no. 41. National Academy of Sciences, pp. 16301–16308, 2013.
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2013 | Journal Article | IST-REx-ID: 2277 |
K. Simmons et al., “Transformation of stimulus correlations by the retina,” PLoS Computational Biology, vol. 9, no. 12. Public Library of Science, 2013.
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2013 | Journal Article | IST-REx-ID: 2914 |
G. Stephens, T. Mora, G. Tkačik, and W. Bialek, “Statistical thermodynamics of natural images,” Physical Review Letters, vol. 110, no. 1. American Physical Society, 2013.
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2012 | Journal Article | IST-REx-ID: 3262 |
G. Tkačik, A. Walczak, and W. Bialek, “Optimizing information flow in small genetic networks. III. A self-interacting gene,” Physical Review E statistical nonlinear and soft matter physics , vol. 85, no. 4. American Institute of Physics, 2012.
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2011 | Journal Article | IST-REx-ID: 3374 |
G. Tkačik and A. Walczak, “Information transmission in genetic regulatory networks a review,” Journal of Physics: Condensed Matter, vol. 23, no. 15. IOP Publishing Ltd., 2011.
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2011 | Journal Article | IST-REx-ID: 3276 |
J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, and P. Nelson, “Fast, scalable, Bayesian spike identification for multi-electrode arrays,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3384 |
G. Tkačik et al., “Natural images from the birthplace of the human eye,” PLoS One, vol. 6, no. 6. Public Library of Science, 2011.
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2010 | Journal Article | IST-REx-ID: 3735
G. Tkačik, J. Prentice, J. Victor, and V. Balasubramanian, “Local statistics in natural scenes predict the saliency of synthetic textures,” PNAS, vol. 107, no. 42. National Academy of Sciences, pp. 18149–18154, 2010.
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2010 | Journal Article | IST-REx-ID: 3736
G. Tkačik, J. Prentice, V. Balasubramanian, and E. Schneidman, “Optimal population coding by noisy spiking neurons,” PNAS, vol. 107, no. 32. National Academy of Sciences, pp. 14419–14424, 2010.
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2010 | Journal Article | IST-REx-ID: 3738
A. Walczak, G. Tkačik, and W. Bialek, “Optimizing information flow in small genetic networks. II. Feed-forward interactions,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 81, no. 4. American Institute of Physics, 2010.
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2010 | Conference Paper | IST-REx-ID: 3430 |
G. Tkačik, “Lecture notes for 2010 summer school on Quantitative Evolutionary and Comparative Genomics,” presented at the Summer School on Quantitative Evolutionary and Comparative Genomics, 2010.
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2010 | Preprint | IST-REx-ID: 3743 |
G. Tkačik, “From statistical mechanics to information theory: understanding biophysical information-processing systems,” ArXiv, vol. q-MN. ArXiv, pp. 1–52, 2010.
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2009 | Journal Article | IST-REx-ID: 3737
G. Tkačik, A. Walczak, and W. Bialek, “Optimizing information flow in small genetic networks,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 80, no. 3. American Institute of Physics, 2009.
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2009 | Journal Article | IST-REx-ID: 3733
S. Kryazhimskiy, G. Tkačik, and J. Plotkin, “The dynamics of adaptation on correlated fitness landscapes,” PNAS, vol. 106, no. 44. National Academy of Sciences, pp. 18638–18643, 2009.
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2009 | Preprint | IST-REx-ID: 3732 |
G. Tkačik, E. Schneidman, M. Berry, and W. Bialek, “Spin glass models for a network of real neurons,” ArXiv, vol. q-NC. ArXiv, 2009.
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2008 | Journal Article | IST-REx-ID: 3734 |
G. Tkačik, T. Gregor, and W. Bialek, “The role of input noise in transcriptional regulation,” PLoS One, vol. 3, no. 7. Public Library of Science, 2008.
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2008 | Journal Article | IST-REx-ID: 3740 |
G. Tkačik, C. Callan, and W. Bialek, “Information flow and optimization in transcriptional regulation,” PNAS, vol. 105, no. 34. National Academy of Sciences, pp. 12265–12270, 2008.
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2008 | Journal Article | IST-REx-ID: 3744 |
G. Tkačik and M. Magnasco, “Decoding spike timing: The differential reverse-correlation method,” Biosystems, vol. 93, no. 1–2. Elsevier, pp. 90–100, 2008.
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2007 | Journal Article | IST-REx-ID: 3731
J. Kinney, G. Tkačik, and C. Callan, “Precise physical models of protein-DNA interaction from high-throughput data,” PNAS, vol. 104, no. 2. National Academy of Sciences, pp. 501–506, 2007.
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2007 | Preprint | IST-REx-ID: 3742 |
T. Broderick, M. Dudik, G. Tkačik, R. Schapire, and W. Bialek, “Faster solutions of the inverse pairwise Ising problem,” ArXiv, vol. q-QM. ArXiv, 2007.
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2006 | Preprint | IST-REx-ID: 3431 |
G. Tkačik, E. Schneidman, M. Berry, and W. Bialek, “Ising models for networks of real neurons,” ArXiv. ArXiv, pp. 1–4, 2006.
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2005 | Journal Article | IST-REx-ID: 3741 |
N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Information-based clustering,” PNAS, vol. 102, no. 51. National Academy of Sciences, pp. 18297–18302, 2005.
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2005 | Preprint | IST-REx-ID: 3746 |
N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Estimating mutual information and multi-information in large networks,” ArXiv. ArXiv, pp. 1–11, 2005.
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106 Publications
2023 | Journal Article | IST-REx-ID: 13127 |
B. E. Casillas Perez, K. Bodova, A. V. Grasse, G. Tkačik, and S. Cremer, “Dynamic pathogen detection and social feedback shape collective hygiene in ants,” Nature Communications, vol. 14. Springer Nature, 2023.
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2023 | Journal Article | IST-REx-ID: 12762 |
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain,” Nature Computational Science, vol. 3. Springer Nature, pp. 254–263, 2023.
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2023 | Journal Article | IST-REx-ID: 14515 |
M. Reinhardt, G. Tkačik, and P. R. Ten Wolde, “Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories,” Physical Review X, vol. 13, no. 4. American Physical Society, 2023.
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2023 | Journal Article | IST-REx-ID: 14656 |
M. Nardin, J. L. Csicsvari, G. Tkačik, and C. Savin, “The structure of hippocampal CA1 interactions optimizes spatial coding across experience,” The Journal of Neuroscience, vol. 43, no. 48. Society of Neuroscience, pp. 8140–8156, 2023.
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2022 | Journal Article | IST-REx-ID: 12156 |
B. Zoller, T. Gregor, and G. Tkačik, “Eukaryotic gene regulation at equilibrium, or non?,” Current Opinion in Systems Biology, vol. 31, no. 9. Elsevier, 2022.
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2022 | Journal Article | IST-REx-ID: 10736 |
M. Lagator et al., “Predicting bacterial promoter function and evolution from random sequences,” eLife, vol. 11. eLife Sciences Publications, 2022.
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2022 | Journal Article | IST-REx-ID: 12332 |
W. F. Mlynarski and G. Tkačik, “Efficient coding theory of dynamic attentional modulation,” PLoS Biology, vol. 20, no. 12. Public Library of Science, p. e3001889, 2022.
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2022 | Journal Article | IST-REx-ID: 12081 |
M. Hledik, N. H. Barton, and G. Tkačik, “Accumulation and maintenance of information in evolution,” Proceedings of the National Academy of Sciences, vol. 119, no. 36. Proceedings of the National Academy of Sciences, 2022.
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2021 | Preprint | IST-REx-ID: 10912 |
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Quantifying the coexistence of neuronal oscillations and avalanches.” arXiv.
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2021 | Preprint | IST-REx-ID: 10579 |
B. Kavcic and G. Tkačik, “Token-driven totally asymmetric simple exclusion process,” arXiv. .
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2021 | Journal Article | IST-REx-ID: 9226 |
G. Tkačik and T. Gregor, “The many bits of positional information,” Development, vol. 148, no. 2. The Company of Biologists, 2021.
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2021 | Journal Article | IST-REx-ID: 9362 |
M. J. Chalk, G. Tkačik, and O. Marre, “Inferring the function performed by a recurrent neural network,” PLoS ONE, vol. 16, no. 4. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 8997 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” PLOS Computational Biology, vol. 17. Public Library of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 7553 |
W. F. Mlynarski, M. Hledik, T. R. Sokolowski, and G. Tkačik, “Statistical analysis and optimality of neural systems,” Neuron, vol. 109, no. 7. Cell Press, p. 1227–1241.e5, 2021.
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2021 | Preprint | IST-REx-ID: 10077 |
M. Nardin, J. L. Csicsvari, G. Tkačik, and C. Savin, “The structure of hippocampal CA1 interactions optimizes spatial coding across experience,” bioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7656 |
M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle for population codes,” Frontiers in Computational Neuroscience, vol. 14. Frontiers, 2020.
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2020 | Journal Article | IST-REx-ID: 8698 |
O. Maoz, G. Tkačik, M. S. Esteki, R. Kiani, and E. Schneidman, “Learning probabilistic neural representations with randomly connected circuits,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40. National Academy of Sciences, pp. 25066–25073, 2020.
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2020 | Journal Article | IST-REx-ID: 9000 |
R. Grah, B. Zoller, and G. Tkačik, “Nonequilibrium models of optimal enhancer function,” PNAS, vol. 117, no. 50. National Academy of Sciences, pp. 31614–31622, 2020.
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2020 | Preprint | IST-REx-ID: 7675 |
R. Grah, B. Zoller, and G. Tkačik, “Normative models of enhancer function,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 8250 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Mechanisms of drug interactions between translation-inhibiting antibiotics,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Preprint | IST-REx-ID: 7673 |
B. Kavcic, G. Tkačik, and M. T. Bollenbach, “A minimal biophysical model of combined antibiotic action,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7652 |
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4. Springer Nature, pp. 612–625, 2020.
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2019 | Preprint | IST-REx-ID: 7552 |
W. Bialek, T. Gregor, and G. Tkačik, “Action at a distance in transcriptional regulation,” arXiv:1912.08579. ArXiv.
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2019 | Journal Article | IST-REx-ID: 5945 |
M. D. Petkova, G. Tkačik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” Cell, vol. 176, no. 4. Cell Press, p. 844–855.e15, 2019.
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2019 | Journal Article | IST-REx-ID: 6784 |
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7. Public Library of Science, 2019.
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2019 | Research Data Reference | IST-REx-ID: 9786
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Supporting text and results.” Public Library of Science, 2019.
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2019 | Journal Article | IST-REx-ID: 6900 |
S. A. Cepeda Humerez, J. Ruess, and G. Tkačik, “Estimating information in time-varying signals,” PLoS computational biology, vol. 15, no. 9. Public Library of Science, p. e1007290, 2019.
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2019 | Conference Paper | IST-REx-ID: 7606 |
M. Hledik, T. R. Sokolowski, and G. Tkačik, “A tight upper bound on mutual information,” in IEEE Information Theory Workshop, ITW 2019, Visby, Sweden, 2019.
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2018 | Journal Article | IST-REx-ID: 281 |
A. Granados, J. Pietsch, S. A. Cepeda Humerez, I. Farquhar, G. Tkačik, and P. Swain, “Distributed and dynamic intracellular organization of extracellular information,” PNAS, vol. 115, no. 23. National Academy of Sciences, pp. 6088–6093, 2018.
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2018 | Journal Article | IST-REx-ID: 406 |
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkačik, “Probabilistic models of individual and collective animal behavior,” PLoS One, vol. 13, no. 3. Public Library of Science, 2018.
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2018 | Research Data Reference | IST-REx-ID: 9831
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkačik, “Implementation of the inference method in Matlab.” Public Library of Science, 2018.
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2018 | Journal Article | IST-REx-ID: 31 |
U. Ferrari, S. Deny, M. J. Chalk, G. Tkačik, O. Marre, and T. Mora, “Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons,” Physical Review E, vol. 98, no. 4. American Physical Society, 2018.
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2018 | Journal Article | IST-REx-ID: 543 |
M. J. Chalk, O. Marre, and G. Tkačik, “Toward a unified theory of efficient, predictive, and sparse coding,” PNAS, vol. 115, no. 1. National Academy of Sciences, pp. 186–191, 2018.
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2018 | Journal Article | IST-REx-ID: 292 |
V. Botella Soler, S. Deny, G. S. Martius, O. Marre, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina,” PLoS Computational Biology, vol. 14, no. 5. Public Library of Science, 2018.
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2018 | Research Data | IST-REx-ID: 5584 |
S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina.” Institute of Science and Technology Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 161 |
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1. Springer Nature, 2018.
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2018 | Research Data | IST-REx-ID: 5587 |
D. De Martino and G. Tkačik, “Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 67 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10. Nature Publishing Group, pp. 1633–1643, 2018.
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2018 | Research Data | IST-REx-ID: 5585 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring.” Institute of Science and Technology Austria, 2018.
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2017 | Journal Article | IST-REx-ID: 613 |
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkačik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 720 |
J. Humplik and G. Tkačik, “Probabilistic models for neural populations that naturally capture global coupling and criticality,” PLoS Computational Biology, vol. 13, no. 9. Public Library of Science, 2017.
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2017 | Journal Article | IST-REx-ID: 725 |
R. Harpaz, G. Tkačik, and E. Schneidman, “Discrete modes of social information processing predict individual behavior of fish in a group,” PNAS, vol. 114, no. 38. National Academy of Sciences, pp. 10149–10154, 2017.
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2017 | Research Data Reference | IST-REx-ID: 9709 |
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, and M. Berry, “Data from: Error-robust modes of the retinal population code.” Dryad, 2017.
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2017 | Journal Article | IST-REx-ID: 1104 |
S. Deny et al., “Multiplexed computations in retinal ganglion cells of a single type,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 955 |
T. Friedlander, R. Prizak, N. H. Barton, and G. Tkačik, “Evolution of new regulatory functions on biophysically realistic fitness landscapes,” Nature Communications, vol. 8, no. 1. Nature Publishing Group, 2017.
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2017 | Journal Article | IST-REx-ID: 943 |
M. P. Zagórski et al., “Decoding of position in the developing neural tube from antiparallel morphogen gradients,” Science, vol. 356, no. 6345. American Association for the Advancement of Science, pp. 1379–1383, 2017.
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2017 | Research Data | IST-REx-ID: 5562 |
O. Marre, G. Tkačik, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Multi-electrode array recording from salamander retinal ganglion cells.” Institute of Science and Technology Austria, 2017.
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2017 | Research Data | IST-REx-ID: 5560 |
T. Bergmiller et al., “Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science and Technology Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 665
T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335. American Association for the Advancement of Science, pp. 311–315, 2017.
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2016 | Conference Paper | IST-REx-ID: 1082 |
M. J. Chalk, O. Marre, and G. Tkačik, “Relevant sparse codes with variational information bottleneck,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain, 2016, vol. 29, pp. 1965–1973.
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2016 | Conference Paper | IST-REx-ID: 1105
C. Savin and G. Tkačik, “Estimating nonlinear neural response functions using GP priors and Kronecker methods,” presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain, 2016, vol. 29, pp. 3610–3618.
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2016 | Journal Article | IST-REx-ID: 1171
G. Tkačik, “Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al.,” Physics of Life Reviews, vol. 17. Elsevier, pp. 166–167, 2016.
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2016 | Journal Article | IST-REx-ID: 1242 |
T. R. Sokolowski, A. Walczak, W. Bialek, and G. Tkačik, “Extending the dynamic range of transcription factor action by translational regulation,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 93, no. 2. American Institute of Physics, 2016.
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2016 | Journal Article | IST-REx-ID: 1248 |
G. Tkačik and W. Bialek, “Information processing in living systems,” Annual Review of Condensed Matter Physics, vol. 7. Annual Reviews, pp. 89–117, 2016.
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2016 | Journal Article | IST-REx-ID: 1420 |
K. Bodova, G. Tkačik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4. Genetics Society of America, pp. 1523–1548, 2016.
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| arXiv
2016 | Journal Article | IST-REx-ID: 1197 |
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, and M. Berry, “Error-robust modes of the retinal population code,” PLoS Computational Biology, vol. 12, no. 11. Public Library of Science, 2016.
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2016 | Journal Article | IST-REx-ID: 1270 |
P. Hillenbrand, U. Gerland, and G. Tkačik, “Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information,” PLoS One, vol. 11, no. 9. Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9870
P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in an Ising model.” Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9869
P. Hillenbrand, U. Gerland, and G. Tkačik, “Error bound on an estimator of position.” Public Library of Science, 2016.
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2016 | Research Data Reference | IST-REx-ID: 9871
P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in a discrete morphogen field.” Public Library of Science, 2016.
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2016 | Journal Article | IST-REx-ID: 1358 |
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7. Nature Publishing Group, 2016.
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2015 | Journal Article | IST-REx-ID: 1697 |
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1701 |
G. Tkačik et al., “Thermodynamics and signatures of criticality in a network of neurons,” PNAS, vol. 112, no. 37. National Academy of Sciences, pp. 11508–11513, 2015.
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2015 | Journal Article | IST-REx-ID: 1885 |
G. Tkačik, J. Dubuis, M. Petkova, and T. Gregor, “Positional information, positional error, and readout precision in morphogenesis: A mathematical framework,” Genetics, vol. 199, no. 1. Genetics Society of America, pp. 39–59, 2015.
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2015 | Journal Article | IST-REx-ID: 1940 |
T. R. Sokolowski and G. Tkačik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6. American Institute of Physics, 2015.
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2015 | Research Data Reference | IST-REx-ID: 9712
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Other fitness models for comparison & for interacting TFBSs.” Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1666 |
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11. Public Library of Science, 2015.
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2015 | Journal Article | IST-REx-ID: 1576 |
S. A. Cepeda Humerez, G. Rieckh, and G. Tkačik, “Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation,” Physical Review Letters, vol. 115, no. 24. American Physical Society, 2015.
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2014 | Journal Article | IST-REx-ID: 1886 |
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, and G. Tkačik, “Variance predicts salience in central sensory processing,” eLife, no. November. eLife Sciences Publications, 2014.
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2014 | Journal Article | IST-REx-ID: 2231 |
G. Rieckh and G. Tkačik, “Noise and information transmission in promoters with multiple internal states,” Biophysical Journal, vol. 106, no. 5. Biophysical Society, pp. 1194–1204, 2014.
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| PubMed | Europe PMC
2014 | Journal Article | IST-REx-ID: 3263 |
G. Tkačik, A. Ghosh, E. Schneidman, and R. Segev, “Adaptation to changes in higher-order stimulus statistics in the salamander retina,” PLoS One, vol. 9, no. 1. Public Library of Science, 2014.
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2014 | Research Data Reference | IST-REx-ID: 9752 |
K. Simmons et al., “Data from: Transformation of stimulus correlations by the retina.” Dryad, 2014.
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2014 | Journal Article | IST-REx-ID: 2257 |
G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Searching for collective behavior in a large network of sensory neurons,” PLoS Computational Biology, vol. 10, no. 1. Public Library of Science, 2014.
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2013 | Journal Article | IST-REx-ID: 2818 |
K. Rajan, O. Marre, and G. Tkačik, “Learning quadratic receptive fields from neural responses to natural stimuli,” Neural Computation, vol. 25, no. 7. MIT Press , pp. 1661–1692, 2013.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2850 |
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, and W. Bialek, “The simplest maximum entropy model for collective behavior in a neural network,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 3. IOP Publishing Ltd., 2013.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2863 |
E. Granot Atedgi, G. Tkačik, R. Segev, and E. Schneidman, “Stimulus-dependent maximum entropy models of neural population codes,” PLoS Computational Biology, vol. 9, no. 3. Public Library of Science, 2013.
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2013 | Journal Article | IST-REx-ID: 2913 |
G. Tkačik, E. Granot Atedgi, R. Segev, and E. Schneidman, “Retinal metric: a stimulus distance measure derived from population neural responses,” Physical Review Letters, vol. 110, no. 5. American Physical Society, 2013.
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2013 | Journal Article | IST-REx-ID: 3261 |
J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional information, in bits,” PNAS, vol. 110, no. 41. National Academy of Sciences, pp. 16301–16308, 2013.
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2013 | Journal Article | IST-REx-ID: 2277 |
K. Simmons et al., “Transformation of stimulus correlations by the retina,” PLoS Computational Biology, vol. 9, no. 12. Public Library of Science, 2013.
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2013 | Journal Article | IST-REx-ID: 2914 |
G. Stephens, T. Mora, G. Tkačik, and W. Bialek, “Statistical thermodynamics of natural images,” Physical Review Letters, vol. 110, no. 1. American Physical Society, 2013.
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| arXiv
2012 | Journal Article | IST-REx-ID: 3262 |
G. Tkačik, A. Walczak, and W. Bialek, “Optimizing information flow in small genetic networks. III. A self-interacting gene,” Physical Review E statistical nonlinear and soft matter physics , vol. 85, no. 4. American Institute of Physics, 2012.
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2011 | Journal Article | IST-REx-ID: 3374 |
G. Tkačik and A. Walczak, “Information transmission in genetic regulatory networks a review,” Journal of Physics: Condensed Matter, vol. 23, no. 15. IOP Publishing Ltd., 2011.
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2011 | Journal Article | IST-REx-ID: 3276 |
J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, and P. Nelson, “Fast, scalable, Bayesian spike identification for multi-electrode arrays,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3384 |
G. Tkačik et al., “Natural images from the birthplace of the human eye,” PLoS One, vol. 6, no. 6. Public Library of Science, 2011.
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2010 | Journal Article | IST-REx-ID: 3735
G. Tkačik, J. Prentice, J. Victor, and V. Balasubramanian, “Local statistics in natural scenes predict the saliency of synthetic textures,” PNAS, vol. 107, no. 42. National Academy of Sciences, pp. 18149–18154, 2010.
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2010 | Journal Article | IST-REx-ID: 3736
G. Tkačik, J. Prentice, V. Balasubramanian, and E. Schneidman, “Optimal population coding by noisy spiking neurons,” PNAS, vol. 107, no. 32. National Academy of Sciences, pp. 14419–14424, 2010.
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2010 | Journal Article | IST-REx-ID: 3738
A. Walczak, G. Tkačik, and W. Bialek, “Optimizing information flow in small genetic networks. II. Feed-forward interactions,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 81, no. 4. American Institute of Physics, 2010.
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2010 | Conference Paper | IST-REx-ID: 3430 |
G. Tkačik, “Lecture notes for 2010 summer school on Quantitative Evolutionary and Comparative Genomics,” presented at the Summer School on Quantitative Evolutionary and Comparative Genomics, 2010.
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2010 | Preprint | IST-REx-ID: 3743 |
G. Tkačik, “From statistical mechanics to information theory: understanding biophysical information-processing systems,” ArXiv, vol. q-MN. ArXiv, pp. 1–52, 2010.
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2009 | Journal Article | IST-REx-ID: 3737
G. Tkačik, A. Walczak, and W. Bialek, “Optimizing information flow in small genetic networks,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 80, no. 3. American Institute of Physics, 2009.
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2009 | Journal Article | IST-REx-ID: 3733
S. Kryazhimskiy, G. Tkačik, and J. Plotkin, “The dynamics of adaptation on correlated fitness landscapes,” PNAS, vol. 106, no. 44. National Academy of Sciences, pp. 18638–18643, 2009.
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2009 | Preprint | IST-REx-ID: 3732 |
G. Tkačik, E. Schneidman, M. Berry, and W. Bialek, “Spin glass models for a network of real neurons,” ArXiv, vol. q-NC. ArXiv, 2009.
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2008 | Journal Article | IST-REx-ID: 3734 |
G. Tkačik, T. Gregor, and W. Bialek, “The role of input noise in transcriptional regulation,” PLoS One, vol. 3, no. 7. Public Library of Science, 2008.
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2008 | Journal Article | IST-REx-ID: 3740 |
G. Tkačik, C. Callan, and W. Bialek, “Information flow and optimization in transcriptional regulation,” PNAS, vol. 105, no. 34. National Academy of Sciences, pp. 12265–12270, 2008.
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2008 | Journal Article | IST-REx-ID: 3744 |
G. Tkačik and M. Magnasco, “Decoding spike timing: The differential reverse-correlation method,” Biosystems, vol. 93, no. 1–2. Elsevier, pp. 90–100, 2008.
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2007 | Journal Article | IST-REx-ID: 3731
J. Kinney, G. Tkačik, and C. Callan, “Precise physical models of protein-DNA interaction from high-throughput data,” PNAS, vol. 104, no. 2. National Academy of Sciences, pp. 501–506, 2007.
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2007 | Preprint | IST-REx-ID: 3742 |
T. Broderick, M. Dudik, G. Tkačik, R. Schapire, and W. Bialek, “Faster solutions of the inverse pairwise Ising problem,” ArXiv, vol. q-QM. ArXiv, 2007.
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2006 | Preprint | IST-REx-ID: 3431 |
G. Tkačik, E. Schneidman, M. Berry, and W. Bialek, “Ising models for networks of real neurons,” ArXiv. ArXiv, pp. 1–4, 2006.
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2005 | Journal Article | IST-REx-ID: 3741 |
N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Information-based clustering,” PNAS, vol. 102, no. 51. National Academy of Sciences, pp. 18297–18302, 2005.
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2005 | Preprint | IST-REx-ID: 3746 |
N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Estimating mutual information and multi-information in large networks,” ArXiv. ArXiv, pp. 1–11, 2005.
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