75 Publications

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[75]
2019 | Preprint | IST-REx-ID: 7083   OA
Kavcic, Bor, Gašper Tkačik, and Tobias Bollenbach. “Mechanistic Origin of Drug Interactions between Translation-Inhibiting Antibiotics.” BioRxiv. Cold Spring Harbor Laboratory, 2019.
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[74]
2019 | Journal Article | IST-REx-ID: 5945
Petkova, Mariela D., Gasper Tkacik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” Cell 176, no. 4 (2019): 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007.
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[73]
2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology 15, no. 7 (2019). https://doi.org/10.1371/journal.pcbi.1007168.
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[72]
2019 | Journal Article | IST-REx-ID: 6900   OA
Cepeda Humerez, Sarah A, Jakob Ruess, and Gašper Tkačik. “Estimating Information in Time-Varying Signals.” PLoS Computational Biology 15, no. 9 (2019): e1007290. https://doi.org/10.1371/journal.pcbi.1007290.
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[71]
2018 | Journal Article | IST-REx-ID: 31   OA
Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkacik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.” Physical Review E 98, no. 4 (2018). https://doi.org/10.1103/PhysRevE.98.042410.
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[70]
2018 | Journal Article | IST-REx-ID: 543   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” PNAS 115, no. 1 (2018): 186–91. https://doi.org/10.1073/pnas.1711114115.
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[69]
2018 | Research Data | IST-REx-ID: 5587   OA
De Martino, Daniele, and Gasper Tkacik. Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:62.
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[68]
2018 | Journal Article | IST-REx-ID: 67
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution 2, no. 10 (2018): 1633–43. https://doi.org/10.1038/s41559-018-0651-y.
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[67]
2018 | Journal Article | IST-REx-ID: 292
Botella Soler, Vicent, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkacik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology 14, no. 5 (2018). https://doi.org/10.1371/journal.pcbi.1006057.
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[66]
2018 | Research Data | IST-REx-ID: 5584   OA
Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkacik. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.
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[65]
2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkacik. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One 13, no. 3 (2018). https://doi.org/10.1371/journal.pone.0193049.
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[64]
2018 | Journal Article | IST-REx-ID: 161
De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkacik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications 9, no. 1 (2018). https://doi.org/10.1038/s41467-018-05417-9.
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[63]
2018 | Journal Article | IST-REx-ID: 281
Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkacik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.” PNAS 115, no. 23 (2018): 6088–93. https://doi.org/10.1073/pnas.1716659115.
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[62]
2018 | Research Data | IST-REx-ID: 5585
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
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[61]
2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkacik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-02159-y.
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[60]
2017 | Research Data | IST-REx-ID: 5562   OA
Marre, Olivier, Gasper Tkacik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:61.
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[59]
2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, Roy, Gasper Tkacik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.” PNAS 114, no. 38 (2017): 10149–54. https://doi.org/10.1073/pnas.1703817114.
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[58]
2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, Jan, and Gasper Tkacik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology 13, no. 9 (2017). https://doi.org/10.1371/journal.pcbi.1005763.
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[57]
2017 | Journal Article | IST-REx-ID: 613   OA
Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkacik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-01683-1.
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[56]
2017 | Journal Article | IST-REx-ID: 943   OA
Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkacik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.” Science 356, no. 6345 (2017): 1379–83. https://doi.org/10.1126/science.aam5887.
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[55]
2017 | Journal Article | IST-REx-ID: 955   OA
Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkacik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-00238-8.
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[54]
2017 | Research Data | IST-REx-ID: 5560
Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkacik, and Calin C Guet. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. IST Austria, 2017. https://doi.org/doi:10.15479/AT:ISTA:53.
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[53]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkacik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.” Science 356, no. 6335 (2017): 311–15. https://doi.org/10.1126/science.aaf4762.
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[52]
2017 | Journal Article | IST-REx-ID: 730
Savin, Cristina, and Gasper Tkacik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.” Current Opinion in Neurobiology 46 (2017): 120–26. https://doi.org/10.1016/j.conb.2017.08.001.
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[51]
2016 | Journal Article | IST-REx-ID: 1197   OA
Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkacik, and Michael Berry. “Error-Robust Modes of the Retinal Population Code.” PLoS Computational Biology 12, no. 11 (2016). https://doi.org/10.1371/journal.pcbi.1005148.
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[50]
2016 | Journal Article | IST-REx-ID: 1248   OA
Tkacik, Gasper, and William Bialek. “Information Processing in Living Systems.” Annual Review of Condensed Matter Physics 7 (2016): 89–117. https://doi.org/10.1146/annurev-conmatphys-031214-014803.
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[49]
2016 | Conference Paper | IST-REx-ID: 1105
Savin, Cristina, and Gasper Tkacik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.
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[48]
2016 | Journal Article | IST-REx-ID: 1270   OA
Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkacik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.” PLoS One 11, no. 9 (2016). https://doi.org/10.1371/journal.pone.0163628.
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[47]
2016 | Journal Article | IST-REx-ID: 1358
Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkacik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.” Nature Communications 7 (2016). https://doi.org/10.1038/ncomms12307.
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[46]
2016 | Conference Paper | IST-REx-ID: 1082   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.
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[45]
2016 | Journal Article | IST-REx-ID: 1171
Tkacik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on "Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function" by O. C. Martin et Al.” Physics of Life Reviews 17 (2016): 166–67. https://doi.org/10.1016/j.plrev.2016.06.005.
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[44]
2016 | Journal Article | IST-REx-ID: 1242   OA
Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkacik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.” Physical Review E Statistical Nonlinear and Soft Matter Physics 93, no. 2 (2016). https://doi.org/10.1103/PhysRevE.93.022404.
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[43]
2016 | Journal Article | IST-REx-ID: 1420   OA
Bod’ová, Katarína, Gasper Tkacik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.” Genetics 202, no. 4 (2016): 1523–48. https://doi.org/10.1534/genetics.115.184127.
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[42]
2015 | Journal Article | IST-REx-ID: 1666   OA
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkacik. “Dynamics of Transcription Factor Binding Site Evolution.” PLoS Genetics 11, no. 11 (2015). https://doi.org/10.1371/journal.pgen.1005639.
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[41]
2015 | Journal Article | IST-REx-ID: 1697   OA
Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gasper Tkacik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.” PLoS Computational Biology 11, no. 7 (2015). https://doi.org/10.1371/journal.pcbi.1004304.
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[40]
2015 | Journal Article | IST-REx-ID: 1940   OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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[39]
2015 | Journal Article | IST-REx-ID: 1701   OA
Tkacik, Gasper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” PNAS 112, no. 37 (2015): 11508–13. https://doi.org/10.1073/pnas.1514188112.
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[38]
2015 | Journal Article | IST-REx-ID: 1885   OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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[37]
2015 | Journal Article | IST-REx-ID: 1576
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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[36]
2014 | Journal Article | IST-REx-ID: 3263   OA
Tkacik, Gasper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.” PLoS One 9, no. 1 (2014). https://doi.org/10.1371/journal.pone.0085841.
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[35]
2014 | Journal Article | IST-REx-ID: 2231   OA
Rieckh, Georg, and Gasper Tkacik. “Noise and Information Transmission in Promoters with Multiple Internal States.” Biophysical Journal 106, no. 5 (2014): 1194–1204. https://doi.org/10.1016/j.bpj.2014.01.014.
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[34]
2014 | Journal Article | IST-REx-ID: 1886   OA
Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gasper Tkacik. “Variance Predicts Salience in Central Sensory Processing.” ELife, no. November (2014). https://doi.org/10.7554/eLife.03722.
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[33]
2014 | Journal Article | IST-REx-ID: 2257
Tkacik, Gasper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology 10, no. 1 (2014). https://doi.org/10.1371/journal.pcbi.1003408.
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[32]
2013 | Journal Article | IST-REx-ID: 2277   OA
Simmons, Kristina, Jason Prentice, Gasper Tkacik, Jan Homann, Heather Yee, Stephanie Palmer, Philip Nelson, and Vijay Balasubramanian. “Transformation of Stimulus Correlations by the Retina.” PLoS Computational Biology 9, no. 12 (2013). https://doi.org/10.1371/journal.pcbi.1003344.
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[31]
2013 | Journal Article | IST-REx-ID: 2913   OA
Tkacik, Gasper, Einat Granot Atedgi, Ronen Segev, and Elad Schneidman. “Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses.” Physical Review Letters 110, no. 5 (2013). https://doi.org/10.1103/PhysRevLett.110.058104.
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[30]
2013 | Journal Article | IST-REx-ID: 2850   OA
Tkacik, Gasper, Olivier Marre, Thierry Mora, Dario Amodei, Michael Berry, and William Bialek. “The Simplest Maximum Entropy Model for Collective Behavior in a Neural Network.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 3 (2013). https://doi.org/10.1088/1742-5468/2013/03/P03011.
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[29]
2013 | Journal Article | IST-REx-ID: 2851
Berry, Michael, Gasper Tkacik, Julien Dubuis, Olivier Marre, and Ravá Da Silveira. “A Simple Method for Estimating the Entropy of Neural Activity.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 3 (2013). https://doi.org/10.1088/1742-5468/2013/03/P03015.
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[28]
2013 | Journal Article | IST-REx-ID: 2818   OA
Rajan, Kanaka, Olivier Marre, and Gasper Tkacik. “Learning Quadratic Receptive Fields from Neural Responses to Natural Stimuli.” Neural Computation 25, no. 7 (2013): 1661–92. https://doi.org/10.1162/NECO_a_00463.
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[27]
2013 | Journal Article | IST-REx-ID: 2863   OA
Granot Atedgi, Einat, Gasper Tkacik, Ronen Segev, and Elad Schneidman. “Stimulus-Dependent Maximum Entropy Models of Neural Population Codes.” PLoS Computational Biology 9, no. 3 (2013). https://doi.org/10.1371/journal.pcbi.1002922.
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[26]
2013 | Journal Article | IST-REx-ID: 2914   OA
Stephens, Greg, Thierry Mora, Gasper Tkacik, and William Bialek. “Statistical Thermodynamics of Natural Images.” Physical Review Letters 110, no. 1 (2013). https://doi.org/10.1103/PhysRevLett.110.018701.
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[25]
2013 | Journal Article | IST-REx-ID: 3261   OA
Dubuis, Julien, Gasper Tkacik, Eric Wieschaus, Thomas Gregor, and William Bialek. “Positional Information, in Bits.” PNAS 110, no. 41 (2013): 16301–8. https://doi.org/10.1073/pnas.1315642110.
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[24]
2012 | Journal Article | IST-REx-ID: 3262   OA
Tkacik, Gasper, Aleksandra Walczak, and William Bialek. “Optimizing Information Flow in Small Genetic Networks. III. A Self-Interacting Gene.” Physical Review E Statistical Nonlinear and Soft Matter Physics 85, no. 4 (2012). https://doi.org/10.1103/PhysRevE.85.041903.
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[23]
2011 | Journal Article | IST-REx-ID: 3276   OA
Prentice, Jason, Jan Homann, Kristina Simmons, Gasper Tkacik, Vijay Balasubramanian, and Philip Nelson. “Fast, Scalable, Bayesian Spike Identification for Multi-Electrode Arrays.” PLoS One 6, no. 7 (2011). https://doi.org/10.1371/journal.pone.0019884.
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[22]
2011 | Journal Article | IST-REx-ID: 3384   OA
Tkacik, Gasper, Patrick Garrigan, Charles Ratliff, Grega Milcinski, Jennifer Klein, Lucia Seyfarth, Peter Sterling, David Brainard, and Vijay Balasubramanian. “Natural Images from the Birthplace of the Human Eye.” PLoS One 6, no. 6 (2011). https://doi.org/10.1371/journal.pone.0020409.
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[21]
2011 | Journal Article | IST-REx-ID: 3401
Little, Shawn, Gasper Tkacik, Thomas Kneeland, Eric Wieschaus, and Thomas Gregor. “The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized Source.” PLoS Biology 9, no. 3 (2011). https://doi.org/10.1371/journal.pbio.1000596.
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[20]
2011 | Journal Article | IST-REx-ID: 3374   OA
Tkacik, Gasper, and Aleksandra Walczak. “Information Transmission in Genetic Regulatory Networks a Review.” Journal of Physics: Condensed Matter 23, no. 15 (2011). https://doi.org/10.1088/0953-8984/23/15/153102.
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[19]
2010 | Conference Paper | IST-REx-ID: 3430   OA
Tkacik, Gasper. “Lecture Notes for 2010 Summer School on Quantitative Evolutionary and Comparative Genomics.” Elsevier, 2010.
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[18]
2010 | Journal Article | IST-REx-ID: 3738
Walczak, Aleksandra, Gasper Tkacik, and William Bialek. “Optimizing Information Flow in Small Genetic Networks. II. Feed-Forward Interactions.” Physical Review E Statistical Nonlinear and Soft Matter Physics 81, no. 4 (2010). https://doi.org/10.1103/PhysRevE.81.041905.
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[17]
2010 | Journal Article | IST-REx-ID: 3735
Tkacik, Gasper, Jason Prentice, Jonathan Victor, and Vijay Balasubramanian. “Local Statistics in Natural Scenes Predict the Saliency of Synthetic Textures.” PNAS 107, no. 42 (2010): 18149–54. https://doi.org/10.1073/pnas.0914916107.
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[16]
2010 | Journal Article | IST-REx-ID: 3736
Tkacik, Gasper, Jason Prentice, Vijay Balasubramanian, and Elad Schneidman. “Optimal Population Coding by Noisy Spiking Neurons.” PNAS 107, no. 32 (2010): 14419–24. https://doi.org/10.1073/pnas.1004906107.
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[15]
2010 | Preprint | IST-REx-ID: 3743   OA
Tkacik, Gasper. “From Statistical Mechanics to Information Theory: Understanding Biophysical Information-Processing Systems.” ArXiv. ArXiv, 2010.
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[14]
2009 | Preprint | IST-REx-ID: 3732   OA
Tkacik, Gasper, Elad Schneidman, Michael Berry, and William Bialek. “Spin Glass Models for a Network of Real Neurons.” ArXiv. ArXiv, 2009.
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[13]
2009 | Journal Article | IST-REx-ID: 3737
Tkacik, Gasper, Aleksandra Walczak, and William Bialek. “Optimizing Information Flow in Small Genetic Networks.” Physical Review E Statistical Nonlinear and Soft Matter Physics 80, no. 3 (2009). https://doi.org/10.1103/PhysRevE.80.031920.
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[12]
2009 | Journal Article | IST-REx-ID: 3745
Tkacik, Gasper, and William Bialek. “Diffusion, Dimensionality, and Noise in Transcriptional Regulation.” Physical Review E Statistical Nonlinear and Soft Matter Physics 79, no. 5 (2009). https://doi.org/10.1103/PhysRevE.79.051901.
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[11]
2009 | Journal Article | IST-REx-ID: 3733
Kryazhimskiy, Sergey, Gasper Tkacik, and Joshua Plotkin. “The Dynamics of Adaptation on Correlated Fitness Landscapes.” PNAS 106, no. 44 (2009): 18638–43. https://doi.org/10.1073/pnas.0905497106.
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[10]
2009 | Book Chapter | IST-REx-ID: 3747
Tkacik, Gasper, and William Bialek. “Cell Biology: Networks, Regulation, Pathways.” In Encyclopedia of Complexity and Systems Science, edited by R. Meyers, 719–41. Springer, 2009. https://doi.org/10.1007/978-0-387-30440-3_48.
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[9]
2008 | Journal Article | IST-REx-ID: 3744   OA
Tkacik, Gasper, and Marcelo Magnasco. “Decoding Spike Timing: The Differential Reverse-Correlation Method.” Biosystems 93, no. 1–2 (2008): 90–100. https://doi.org/10.1016/j.biosystems.2008.04.011.
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[8]
2008 | Journal Article | IST-REx-ID: 3740   OA
Tkacik, Gasper, Curtis Callan, and William Bialek. “Information Flow and Optimization in Transcriptional Regulation.” PNAS 105, no. 34 (2008): 12265–70. https://doi.org/10.1073/pnas.0806077105.
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[7]
2008 | Journal Article | IST-REx-ID: 3734   OA
Tkacik, Gasper, Thomas Gregor, and William Bialek. “The Role of Input Noise in Transcriptional Regulation.” PLoS One 3, no. 7 (2008). https://doi.org/10.1371/journal.pone.0002774.
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[6]
2008 | Journal Article | IST-REx-ID: 3739
Tkacik, Gasper, Curtis Callan, and William Bialek. “Information Capacity of Genetic Regulatory Elements.” Physical Review E Statistical Nonlinear and Soft Matter Physics 78, no. 1 (2008). https://doi.org/10.1103/PhysRevE.78.011910.
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[5]
2007 | Preprint | IST-REx-ID: 3742   OA
Broderick, Tamara, Miroslav Dudik, Gasper Tkacik, Robert Schapire, and William Bialek. “Faster Solutions of the Inverse Pairwise Ising Problem.” ArXiv. ArXiv, 2007.
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[4]
2007 | Journal Article | IST-REx-ID: 3731
Kinney, Justin, Gasper Tkacik, and Curtis Callan. “Precise Physical Models of Protein-DNA Interaction from High-Throughput Data.” PNAS 104, no. 2 (2007): 501–6. https://doi.org/10.1073/pnas.0609908104.
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[3]
2006 | Preprint | IST-REx-ID: 3431   OA
Tkacik, Gasper, E. Schneidman, M. Berry, and William Bialek. “Ising Models for Networks of Real Neurons.” ArXiv. ArXiv, 2006.
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[2]
2005 | Journal Article | IST-REx-ID: 3741   OA
Slonim, N., G. Atwal, Gasper Tkacik, and William Bialek. “Information-Based Clustering.” PNAS 102, no. 51 (2005): 18297–302. https://doi.org/10.1073/pnas.0507432102.
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[1]
2005 | Preprint | IST-REx-ID: 3746   OA
Slonim, Noam, Gurinder Atwal, Gasper Tkacik, and William Bialek. “Estimating Mutual Information and Multi-Information in Large Networks.” ArXiv. ArXiv, 2005.
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[75]
2019 | Preprint | IST-REx-ID: 7083   OA
Kavcic, Bor, Gašper Tkačik, and Tobias Bollenbach. “Mechanistic Origin of Drug Interactions between Translation-Inhibiting Antibiotics.” BioRxiv. Cold Spring Harbor Laboratory, 2019.
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[74]
2019 | Journal Article | IST-REx-ID: 5945
Petkova, Mariela D., Gasper Tkacik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” Cell 176, no. 4 (2019): 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007.
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[73]
2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology 15, no. 7 (2019). https://doi.org/10.1371/journal.pcbi.1007168.
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[72]
2019 | Journal Article | IST-REx-ID: 6900   OA
Cepeda Humerez, Sarah A, Jakob Ruess, and Gašper Tkačik. “Estimating Information in Time-Varying Signals.” PLoS Computational Biology 15, no. 9 (2019): e1007290. https://doi.org/10.1371/journal.pcbi.1007290.
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[71]
2018 | Journal Article | IST-REx-ID: 31   OA
Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkacik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.” Physical Review E 98, no. 4 (2018). https://doi.org/10.1103/PhysRevE.98.042410.
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[70]
2018 | Journal Article | IST-REx-ID: 543   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” PNAS 115, no. 1 (2018): 186–91. https://doi.org/10.1073/pnas.1711114115.
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[69]
2018 | Research Data | IST-REx-ID: 5587   OA
De Martino, Daniele, and Gasper Tkacik. Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:62.
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[68]
2018 | Journal Article | IST-REx-ID: 67
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution 2, no. 10 (2018): 1633–43. https://doi.org/10.1038/s41559-018-0651-y.
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[67]
2018 | Journal Article | IST-REx-ID: 292
Botella Soler, Vicent, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkacik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology 14, no. 5 (2018). https://doi.org/10.1371/journal.pcbi.1006057.
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[66]
2018 | Research Data | IST-REx-ID: 5584   OA
Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkacik. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.
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[65]
2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkacik. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One 13, no. 3 (2018). https://doi.org/10.1371/journal.pone.0193049.
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[64]
2018 | Journal Article | IST-REx-ID: 161
De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkacik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications 9, no. 1 (2018). https://doi.org/10.1038/s41467-018-05417-9.
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[63]
2018 | Journal Article | IST-REx-ID: 281
Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkacik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.” PNAS 115, no. 23 (2018): 6088–93. https://doi.org/10.1073/pnas.1716659115.
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[62]
2018 | Research Data | IST-REx-ID: 5585
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
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[61]
2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkacik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-02159-y.
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[60]
2017 | Research Data | IST-REx-ID: 5562   OA
Marre, Olivier, Gasper Tkacik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:61.
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[59]
2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, Roy, Gasper Tkacik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.” PNAS 114, no. 38 (2017): 10149–54. https://doi.org/10.1073/pnas.1703817114.
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[58]
2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, Jan, and Gasper Tkacik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology 13, no. 9 (2017). https://doi.org/10.1371/journal.pcbi.1005763.
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[57]
2017 | Journal Article | IST-REx-ID: 613   OA
Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkacik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-01683-1.
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[56]
2017 | Journal Article | IST-REx-ID: 943   OA
Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkacik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.” Science 356, no. 6345 (2017): 1379–83. https://doi.org/10.1126/science.aam5887.
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[55]
2017 | Journal Article | IST-REx-ID: 955   OA
Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkacik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-00238-8.
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[54]
2017 | Research Data | IST-REx-ID: 5560
Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkacik, and Calin C Guet. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. IST Austria, 2017. https://doi.org/doi:10.15479/AT:ISTA:53.
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[53]
2017 | Journal Article | IST-REx-ID: 665
Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkacik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.” Science 356, no. 6335 (2017): 311–15. https://doi.org/10.1126/science.aaf4762.
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[52]
2017 | Journal Article | IST-REx-ID: 730
Savin, Cristina, and Gasper Tkacik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.” Current Opinion in Neurobiology 46 (2017): 120–26. https://doi.org/10.1016/j.conb.2017.08.001.
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[51]
2016 | Journal Article | IST-REx-ID: 1197   OA
Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkacik, and Michael Berry. “Error-Robust Modes of the Retinal Population Code.” PLoS Computational Biology 12, no. 11 (2016). https://doi.org/10.1371/journal.pcbi.1005148.
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[50]
2016 | Journal Article | IST-REx-ID: 1248   OA
Tkacik, Gasper, and William Bialek. “Information Processing in Living Systems.” Annual Review of Condensed Matter Physics 7 (2016): 89–117. https://doi.org/10.1146/annurev-conmatphys-031214-014803.
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[49]
2016 | Conference Paper | IST-REx-ID: 1105
Savin, Cristina, and Gasper Tkacik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.
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[48]
2016 | Journal Article | IST-REx-ID: 1270   OA
Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkacik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.” PLoS One 11, no. 9 (2016). https://doi.org/10.1371/journal.pone.0163628.
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[47]
2016 | Journal Article | IST-REx-ID: 1358
Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkacik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.” Nature Communications 7 (2016). https://doi.org/10.1038/ncomms12307.
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[46]
2016 | Conference Paper | IST-REx-ID: 1082   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.
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[45]
2016 | Journal Article | IST-REx-ID: 1171
Tkacik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on "Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function" by O. C. Martin et Al.” Physics of Life Reviews 17 (2016): 166–67. https://doi.org/10.1016/j.plrev.2016.06.005.
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[44]
2016 | Journal Article | IST-REx-ID: 1242   OA
Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkacik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.” Physical Review E Statistical Nonlinear and Soft Matter Physics 93, no. 2 (2016). https://doi.org/10.1103/PhysRevE.93.022404.
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[43]
2016 | Journal Article | IST-REx-ID: 1420   OA
Bod’ová, Katarína, Gasper Tkacik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.” Genetics 202, no. 4 (2016): 1523–48. https://doi.org/10.1534/genetics.115.184127.
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[42]
2015 | Journal Article | IST-REx-ID: 1666   OA
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkacik. “Dynamics of Transcription Factor Binding Site Evolution.” PLoS Genetics 11, no. 11 (2015). https://doi.org/10.1371/journal.pgen.1005639.
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[41]
2015 | Journal Article | IST-REx-ID: 1697   OA
Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gasper Tkacik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.” PLoS Computational Biology 11, no. 7 (2015). https://doi.org/10.1371/journal.pcbi.1004304.
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[40]
2015 | Journal Article | IST-REx-ID: 1940   OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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[39]
2015 | Journal Article | IST-REx-ID: 1701   OA
Tkacik, Gasper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” PNAS 112, no. 37 (2015): 11508–13. https://doi.org/10.1073/pnas.1514188112.
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[38]
2015 | Journal Article | IST-REx-ID: 1885   OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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[37]
2015 | Journal Article | IST-REx-ID: 1576
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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[36]
2014 | Journal Article | IST-REx-ID: 3263   OA
Tkacik, Gasper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.” PLoS One 9, no. 1 (2014). https://doi.org/10.1371/journal.pone.0085841.
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[35]
2014 | Journal Article | IST-REx-ID: 2231   OA
Rieckh, Georg, and Gasper Tkacik. “Noise and Information Transmission in Promoters with Multiple Internal States.” Biophysical Journal 106, no. 5 (2014): 1194–1204. https://doi.org/10.1016/j.bpj.2014.01.014.
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[34]
2014 | Journal Article | IST-REx-ID: 1886   OA
Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gasper Tkacik. “Variance Predicts Salience in Central Sensory Processing.” ELife, no. November (2014). https://doi.org/10.7554/eLife.03722.
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[33]
2014 | Journal Article | IST-REx-ID: 2257
Tkacik, Gasper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology 10, no. 1 (2014). https://doi.org/10.1371/journal.pcbi.1003408.
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[32]
2013 | Journal Article | IST-REx-ID: 2277   OA
Simmons, Kristina, Jason Prentice, Gasper Tkacik, Jan Homann, Heather Yee, Stephanie Palmer, Philip Nelson, and Vijay Balasubramanian. “Transformation of Stimulus Correlations by the Retina.” PLoS Computational Biology 9, no. 12 (2013). https://doi.org/10.1371/journal.pcbi.1003344.
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[31]
2013 | Journal Article | IST-REx-ID: 2913   OA
Tkacik, Gasper, Einat Granot Atedgi, Ronen Segev, and Elad Schneidman. “Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses.” Physical Review Letters 110, no. 5 (2013). https://doi.org/10.1103/PhysRevLett.110.058104.
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[30]
2013 | Journal Article | IST-REx-ID: 2850   OA
Tkacik, Gasper, Olivier Marre, Thierry Mora, Dario Amodei, Michael Berry, and William Bialek. “The Simplest Maximum Entropy Model for Collective Behavior in a Neural Network.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 3 (2013). https://doi.org/10.1088/1742-5468/2013/03/P03011.
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[29]
2013 | Journal Article | IST-REx-ID: 2851
Berry, Michael, Gasper Tkacik, Julien Dubuis, Olivier Marre, and Ravá Da Silveira. “A Simple Method for Estimating the Entropy of Neural Activity.” Journal of Statistical Mechanics Theory and Experiment 2013, no. 3 (2013). https://doi.org/10.1088/1742-5468/2013/03/P03015.
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[28]
2013 | Journal Article | IST-REx-ID: 2818   OA
Rajan, Kanaka, Olivier Marre, and Gasper Tkacik. “Learning Quadratic Receptive Fields from Neural Responses to Natural Stimuli.” Neural Computation 25, no. 7 (2013): 1661–92. https://doi.org/10.1162/NECO_a_00463.
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[27]
2013 | Journal Article | IST-REx-ID: 2863   OA
Granot Atedgi, Einat, Gasper Tkacik, Ronen Segev, and Elad Schneidman. “Stimulus-Dependent Maximum Entropy Models of Neural Population Codes.” PLoS Computational Biology 9, no. 3 (2013). https://doi.org/10.1371/journal.pcbi.1002922.
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[26]
2013 | Journal Article | IST-REx-ID: 2914   OA
Stephens, Greg, Thierry Mora, Gasper Tkacik, and William Bialek. “Statistical Thermodynamics of Natural Images.” Physical Review Letters 110, no. 1 (2013). https://doi.org/10.1103/PhysRevLett.110.018701.
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[25]
2013 | Journal Article | IST-REx-ID: 3261   OA
Dubuis, Julien, Gasper Tkacik, Eric Wieschaus, Thomas Gregor, and William Bialek. “Positional Information, in Bits.” PNAS 110, no. 41 (2013): 16301–8. https://doi.org/10.1073/pnas.1315642110.
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[24]
2012 | Journal Article | IST-REx-ID: 3262   OA
Tkacik, Gasper, Aleksandra Walczak, and William Bialek. “Optimizing Information Flow in Small Genetic Networks. III. A Self-Interacting Gene.” Physical Review E Statistical Nonlinear and Soft Matter Physics 85, no. 4 (2012). https://doi.org/10.1103/PhysRevE.85.041903.
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[23]
2011 | Journal Article | IST-REx-ID: 3276   OA
Prentice, Jason, Jan Homann, Kristina Simmons, Gasper Tkacik, Vijay Balasubramanian, and Philip Nelson. “Fast, Scalable, Bayesian Spike Identification for Multi-Electrode Arrays.” PLoS One 6, no. 7 (2011). https://doi.org/10.1371/journal.pone.0019884.
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[22]
2011 | Journal Article | IST-REx-ID: 3384   OA
Tkacik, Gasper, Patrick Garrigan, Charles Ratliff, Grega Milcinski, Jennifer Klein, Lucia Seyfarth, Peter Sterling, David Brainard, and Vijay Balasubramanian. “Natural Images from the Birthplace of the Human Eye.” PLoS One 6, no. 6 (2011). https://doi.org/10.1371/journal.pone.0020409.
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[21]
2011 | Journal Article | IST-REx-ID: 3401
Little, Shawn, Gasper Tkacik, Thomas Kneeland, Eric Wieschaus, and Thomas Gregor. “The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized Source.” PLoS Biology 9, no. 3 (2011). https://doi.org/10.1371/journal.pbio.1000596.
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[20]
2011 | Journal Article | IST-REx-ID: 3374   OA
Tkacik, Gasper, and Aleksandra Walczak. “Information Transmission in Genetic Regulatory Networks a Review.” Journal of Physics: Condensed Matter 23, no. 15 (2011). https://doi.org/10.1088/0953-8984/23/15/153102.
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[19]
2010 | Conference Paper | IST-REx-ID: 3430   OA
Tkacik, Gasper. “Lecture Notes for 2010 Summer School on Quantitative Evolutionary and Comparative Genomics.” Elsevier, 2010.
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[18]
2010 | Journal Article | IST-REx-ID: 3738
Walczak, Aleksandra, Gasper Tkacik, and William Bialek. “Optimizing Information Flow in Small Genetic Networks. II. Feed-Forward Interactions.” Physical Review E Statistical Nonlinear and Soft Matter Physics 81, no. 4 (2010). https://doi.org/10.1103/PhysRevE.81.041905.
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[17]
2010 | Journal Article | IST-REx-ID: 3735
Tkacik, Gasper, Jason Prentice, Jonathan Victor, and Vijay Balasubramanian. “Local Statistics in Natural Scenes Predict the Saliency of Synthetic Textures.” PNAS 107, no. 42 (2010): 18149–54. https://doi.org/10.1073/pnas.0914916107.
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[16]
2010 | Journal Article | IST-REx-ID: 3736
Tkacik, Gasper, Jason Prentice, Vijay Balasubramanian, and Elad Schneidman. “Optimal Population Coding by Noisy Spiking Neurons.” PNAS 107, no. 32 (2010): 14419–24. https://doi.org/10.1073/pnas.1004906107.
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[15]
2010 | Preprint | IST-REx-ID: 3743   OA
Tkacik, Gasper. “From Statistical Mechanics to Information Theory: Understanding Biophysical Information-Processing Systems.” ArXiv. ArXiv, 2010.
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[14]
2009 | Preprint | IST-REx-ID: 3732   OA
Tkacik, Gasper, Elad Schneidman, Michael Berry, and William Bialek. “Spin Glass Models for a Network of Real Neurons.” ArXiv. ArXiv, 2009.
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[13]
2009 | Journal Article | IST-REx-ID: 3737
Tkacik, Gasper, Aleksandra Walczak, and William Bialek. “Optimizing Information Flow in Small Genetic Networks.” Physical Review E Statistical Nonlinear and Soft Matter Physics 80, no. 3 (2009). https://doi.org/10.1103/PhysRevE.80.031920.
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[12]
2009 | Journal Article | IST-REx-ID: 3745
Tkacik, Gasper, and William Bialek. “Diffusion, Dimensionality, and Noise in Transcriptional Regulation.” Physical Review E Statistical Nonlinear and Soft Matter Physics 79, no. 5 (2009). https://doi.org/10.1103/PhysRevE.79.051901.
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[11]
2009 | Journal Article | IST-REx-ID: 3733
Kryazhimskiy, Sergey, Gasper Tkacik, and Joshua Plotkin. “The Dynamics of Adaptation on Correlated Fitness Landscapes.” PNAS 106, no. 44 (2009): 18638–43. https://doi.org/10.1073/pnas.0905497106.
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[10]
2009 | Book Chapter | IST-REx-ID: 3747
Tkacik, Gasper, and William Bialek. “Cell Biology: Networks, Regulation, Pathways.” In Encyclopedia of Complexity and Systems Science, edited by R. Meyers, 719–41. Springer, 2009. https://doi.org/10.1007/978-0-387-30440-3_48.
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[9]
2008 | Journal Article | IST-REx-ID: 3744   OA
Tkacik, Gasper, and Marcelo Magnasco. “Decoding Spike Timing: The Differential Reverse-Correlation Method.” Biosystems 93, no. 1–2 (2008): 90–100. https://doi.org/10.1016/j.biosystems.2008.04.011.
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[8]
2008 | Journal Article | IST-REx-ID: 3740   OA
Tkacik, Gasper, Curtis Callan, and William Bialek. “Information Flow and Optimization in Transcriptional Regulation.” PNAS 105, no. 34 (2008): 12265–70. https://doi.org/10.1073/pnas.0806077105.
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[7]
2008 | Journal Article | IST-REx-ID: 3734   OA
Tkacik, Gasper, Thomas Gregor, and William Bialek. “The Role of Input Noise in Transcriptional Regulation.” PLoS One 3, no. 7 (2008). https://doi.org/10.1371/journal.pone.0002774.
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[6]
2008 | Journal Article | IST-REx-ID: 3739
Tkacik, Gasper, Curtis Callan, and William Bialek. “Information Capacity of Genetic Regulatory Elements.” Physical Review E Statistical Nonlinear and Soft Matter Physics 78, no. 1 (2008). https://doi.org/10.1103/PhysRevE.78.011910.
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[5]
2007 | Preprint | IST-REx-ID: 3742   OA
Broderick, Tamara, Miroslav Dudik, Gasper Tkacik, Robert Schapire, and William Bialek. “Faster Solutions of the Inverse Pairwise Ising Problem.” ArXiv. ArXiv, 2007.
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[4]
2007 | Journal Article | IST-REx-ID: 3731
Kinney, Justin, Gasper Tkacik, and Curtis Callan. “Precise Physical Models of Protein-DNA Interaction from High-Throughput Data.” PNAS 104, no. 2 (2007): 501–6. https://doi.org/10.1073/pnas.0609908104.
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[3]
2006 | Preprint | IST-REx-ID: 3431   OA
Tkacik, Gasper, E. Schneidman, M. Berry, and William Bialek. “Ising Models for Networks of Real Neurons.” ArXiv. ArXiv, 2006.
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[2]
2005 | Journal Article | IST-REx-ID: 3741   OA
Slonim, N., G. Atwal, Gasper Tkacik, and William Bialek. “Information-Based Clustering.” PNAS 102, no. 51 (2005): 18297–302. https://doi.org/10.1073/pnas.0507432102.
View | DOI | Download (ext.)
 
[1]
2005 | Preprint | IST-REx-ID: 3746   OA
Slonim, Noam, Gurinder Atwal, Gasper Tkacik, and William Bialek. “Estimating Mutual Information and Multi-Information in Large Networks.” ArXiv. ArXiv, 2005.
View | Download (ext.)
 

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