34 Publications

Mark all

[34]
2020 | Journal Article | IST-REx-ID: 7652
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 423   OA
CRISPR-based herd immunity can limit phage epidemics in bacterial populations
P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, ELife 7 (2018).
View | Files available | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67   OA
Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkacik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018) 1633–1643.
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585
Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkacik, J.P. Bollback, C.C. Guet, Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring, IST Austria, 2018.
View | Files available | DOI
 
[30]
2017 | Journal Article | IST-REx-ID: 1077   OA
Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family
R.A. Fernandes Redondo, H. Vladar, T. Włodarski, J.P. Bollback, Journal of the Royal Society Interface 14 (2017).
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 954   OA
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 570   OA
Regulatory network structure determines patterns of intermolecular epistasis
M. Lagator, S. Sarikas, H. Acar, J.P. Bollback, C.C. Guet, ELife 6 (2017).
View | Files available | DOI
 
[27]
2016 | Journal Article | IST-REx-ID: 1427   OA
Epistatic interactions in the arabinose cis-regulatory element
M. Lagator, C. Igler, A. Moreno, C.C. Guet, J.P. Bollback, Molecular Biology and Evolution 33 (2016) 761–769.
View | Files available | DOI
 
[26]
2014 | Journal Article | IST-REx-ID: 2042   OA
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
View | Files available | DOI
 
[25]
2013 | Journal Article | IST-REx-ID: 2412   OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
View | Files available | DOI
 
[24]
2013 | Journal Article | IST-REx-ID: 500   OA
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).
View | Files available | DOI
 
[23]
2013 | Journal Article | IST-REx-ID: 2410   OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
View | Files available | DOI
 
[22]
2010 | Journal Article | IST-REx-ID: 4358
Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation
C. Guinane, N. Ben Zakour, M. Tormo Mas, L. Weinert, B. Lowder, R. Cartwright, D. Smyth, C. Smyth, J. Lindsay, K. Gould, A. Witney, J. Hinds, J.P. Bollback, A. Rambaut, J. Penades, J.R. Fitzgerald, Genome Biology and Evolution 2 (2010) 454–466.
View | DOI
 
[21]
2009 | Journal Article | IST-REx-ID: 4357 View | DOI
 
[20]
2008 | Journal Article | IST-REx-ID: 3435   OA
Estimation of 2Nes From Temporal Allele Frequency Data
J.P. Bollback, T. York, R. Nielsen, Genetics 179 (2008) 497–502.
View | DOI | Download (ext.)
 
[19]
2007 | Journal Article | IST-REx-ID: 4355
Clonal interference is alleviated by high mutation rates in large populations
J.P. Bollback, J. Huelsenbeck, Molecular Biology and Evolution 24 (2007) 1397–1406.
View | DOI
 
[18]
2007 | Journal Article | IST-REx-ID: 4356
Genes under positive selection in Escherichia coli
L. Petersen, J.P. Bollback, M. Dimmic, M. Hubisz, R. Nielsen, Genome Research 17 (2007) 1336–1343.
View | DOI
 
[17]
2007 | Journal Article | IST-REx-ID: 3436
Behavioral paternity predicts genetic paternity in satin bowerbirds, a species with a non-resource-based mating system
S. Reynolds, K. Dryer, J.P. Bollback, J.A. Uy, G. Patricelli, T. Robson, G. Borgia, M. Braun, The Auk 124 (2007) 857–867.
View | DOI
 
[16]
2007 | Book Chapter | IST-REx-ID: 3432
Estimating the history of mutations on a phylogeny
J.P. Bollback, P. Gardner, R. Nielsen, in:, D. Liberles (Ed.), Ancestral Sequence Reconstruction, Oxford University Press, 2007, pp. 69–79.
View | DOI
 
[15]
2007 | Journal Article | IST-REx-ID: 4353
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
J. Binladen, M.T. Gilbert, J.P. Bollback, F. Panitz, C. Bendixen, R. Nielsen, E. Willerslev, PLoS One 2 (2007).
View | DOI
 
[14]
2007 | Journal Article | IST-REx-ID: 4354
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
E. Freyhult, J.P. Bollback, P. Gardner, Genome Research 17 (2007) 117–25.
View | DOI | Download (ext.)
 
[13]
2006 | Journal Article | IST-REx-ID: 4351 View | DOI
 
[12]
2006 | Journal Article | IST-REx-ID: 4352
Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil
J. Conn, J. Vineis, J.P. Bollback, D. Onyabe, R. Wilkerson, M. Povoa, The American Journal of Tropical Medicine and Hygiene 74 (2006) 798–806.
View | Download (ext.)
 
[11]
2006 | Journal Article | IST-REx-ID: 3437
Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution
A. Betancourt, J.P. Bollback, Current Opinion in Genetics & Development 16 (2006) 618–623.
View | DOI
 
[10]
2005 | Book Chapter | IST-REx-ID: 3433
Posterior mapping and posterior predictive distributions
J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.
View | DOI
 
[9]
2003 | Journal Article | IST-REx-ID: 4348
Stochastic mapping of morphological characters
J. Huelsenbeck, R. Nielsen, J.P. Bollback, Systematic Biology 52 (2003) 131–58.
View | DOI
 
[8]
2003 | Journal Article | IST-REx-ID: 4350
True and false gharials: A nuclear gene phylogeny of crocodylia
J. Harshman, C. Huddleston, J.P. Bollback, T. Parsons, M. Braun, Systematic Biology 52 (2003) 386–402.
View | DOI
 
[7]
2002 | Journal Article | IST-REx-ID: 4349
Bayesian model adequacy and choice in phylogenetics
J.P. Bollback, Molecular Biology and Evolution 19 (2002) 1171–80.
View | Download (ext.)
 
[6]
2002 | Journal Article | IST-REx-ID: 4347
Inferring the root of a phylogenetic tree
J. Huelsenbeck, J.P. Bollback, A. Levine, Systematic Biology 51 (2002) 32–43.
View | DOI
 
[5]
2001 | Book Chapter | IST-REx-ID: 3434
Application of the likelihood function in phylogenetic analysis
J. Huelsenbeck, J.P. Bollback, in:, D. Balding, M. Bishop, C. Cannings (Eds.), Handbook of Statistical Genetics, Wiley-Blackwell, 2001, pp. 415–439.
View | DOI
 
[4]
2001 | Journal Article | IST-REx-ID: 3439
Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi
J. Conn, J.P. Bollback, D. Onyabe, T. Robinson, R. Wilkerson, M. Povoa, Molecular Ecology Notes 1 (2001) 223–225.
View | DOI
 
[3]
2001 | Journal Article | IST-REx-ID: 4229
Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (Family Leviviridae)
J.P. Bollback, J. Huelsenbeck, Journal of Molecular Evolution 52 (2001) 117–128.
View | DOI
 
[2]
2001 | Journal Article | IST-REx-ID: 3438
Bayesian inference of phylogeny and its impact on evolutionary biology
J. Huelsenbeck, F. Ronquist, R. Nielsen, J.P. Bollback, Science 294 (2001) 2310–2314.
View | DOI
 
[1]
2001 | Journal Article | IST-REx-ID: 3440
Empirical and hierarchical Bayesian estimation of ancestral states
J. Huelsenbeck, J.P. Bollback, Systematic Biology 50 (2001) 351–366.
View | DOI
 

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34 Publications

Mark all

[34]
2020 | Journal Article | IST-REx-ID: 7652
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
View | Files available | DOI
 
[33]
2018 | Journal Article | IST-REx-ID: 423   OA
CRISPR-based herd immunity can limit phage epidemics in bacterial populations
P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, ELife 7 (2018).
View | Files available | DOI
 
[32]
2018 | Journal Article | IST-REx-ID: 67   OA
Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkacik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018) 1633–1643.
View | Files available | DOI
 
[31]
2018 | Research Data | IST-REx-ID: 5585
Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkacik, J.P. Bollback, C.C. Guet, Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring, IST Austria, 2018.
View | Files available | DOI
 
[30]
2017 | Journal Article | IST-REx-ID: 1077   OA
Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family
R.A. Fernandes Redondo, H. Vladar, T. Włodarski, J.P. Bollback, Journal of the Royal Society Interface 14 (2017).
View | Files available | DOI
 
[29]
2017 | Journal Article | IST-REx-ID: 954   OA
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
View | Files available | DOI
 
[28]
2017 | Journal Article | IST-REx-ID: 570   OA
Regulatory network structure determines patterns of intermolecular epistasis
M. Lagator, S. Sarikas, H. Acar, J.P. Bollback, C.C. Guet, ELife 6 (2017).
View | Files available | DOI
 
[27]
2016 | Journal Article | IST-REx-ID: 1427   OA
Epistatic interactions in the arabinose cis-regulatory element
M. Lagator, C. Igler, A. Moreno, C.C. Guet, J.P. Bollback, Molecular Biology and Evolution 33 (2016) 761–769.
View | Files available | DOI
 
[26]
2014 | Journal Article | IST-REx-ID: 2042   OA
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
View | Files available | DOI
 
[25]
2013 | Journal Article | IST-REx-ID: 2412   OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
View | Files available | DOI
 
[24]
2013 | Journal Article | IST-REx-ID: 500   OA
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).
View | Files available | DOI
 
[23]
2013 | Journal Article | IST-REx-ID: 2410   OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
View | Files available | DOI
 
[22]
2010 | Journal Article | IST-REx-ID: 4358
Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation
C. Guinane, N. Ben Zakour, M. Tormo Mas, L. Weinert, B. Lowder, R. Cartwright, D. Smyth, C. Smyth, J. Lindsay, K. Gould, A. Witney, J. Hinds, J.P. Bollback, A. Rambaut, J. Penades, J.R. Fitzgerald, Genome Biology and Evolution 2 (2010) 454–466.
View | DOI
 
[21]
2009 | Journal Article | IST-REx-ID: 4357 View | DOI
 
[20]
2008 | Journal Article | IST-REx-ID: 3435   OA
Estimation of 2Nes From Temporal Allele Frequency Data
J.P. Bollback, T. York, R. Nielsen, Genetics 179 (2008) 497–502.
View | DOI | Download (ext.)
 
[19]
2007 | Journal Article | IST-REx-ID: 4355
Clonal interference is alleviated by high mutation rates in large populations
J.P. Bollback, J. Huelsenbeck, Molecular Biology and Evolution 24 (2007) 1397–1406.
View | DOI
 
[18]
2007 | Journal Article | IST-REx-ID: 4356
Genes under positive selection in Escherichia coli
L. Petersen, J.P. Bollback, M. Dimmic, M. Hubisz, R. Nielsen, Genome Research 17 (2007) 1336–1343.
View | DOI
 
[17]
2007 | Journal Article | IST-REx-ID: 3436
Behavioral paternity predicts genetic paternity in satin bowerbirds, a species with a non-resource-based mating system
S. Reynolds, K. Dryer, J.P. Bollback, J.A. Uy, G. Patricelli, T. Robson, G. Borgia, M. Braun, The Auk 124 (2007) 857–867.
View | DOI
 
[16]
2007 | Book Chapter | IST-REx-ID: 3432
Estimating the history of mutations on a phylogeny
J.P. Bollback, P. Gardner, R. Nielsen, in:, D. Liberles (Ed.), Ancestral Sequence Reconstruction, Oxford University Press, 2007, pp. 69–79.
View | DOI
 
[15]
2007 | Journal Article | IST-REx-ID: 4353
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
J. Binladen, M.T. Gilbert, J.P. Bollback, F. Panitz, C. Bendixen, R. Nielsen, E. Willerslev, PLoS One 2 (2007).
View | DOI
 
[14]
2007 | Journal Article | IST-REx-ID: 4354
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
E. Freyhult, J.P. Bollback, P. Gardner, Genome Research 17 (2007) 117–25.
View | DOI | Download (ext.)
 
[13]
2006 | Journal Article | IST-REx-ID: 4351 View | DOI
 
[12]
2006 | Journal Article | IST-REx-ID: 4352
Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil
J. Conn, J. Vineis, J.P. Bollback, D. Onyabe, R. Wilkerson, M. Povoa, The American Journal of Tropical Medicine and Hygiene 74 (2006) 798–806.
View | Download (ext.)
 
[11]
2006 | Journal Article | IST-REx-ID: 3437
Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution
A. Betancourt, J.P. Bollback, Current Opinion in Genetics & Development 16 (2006) 618–623.
View | DOI
 
[10]
2005 | Book Chapter | IST-REx-ID: 3433
Posterior mapping and posterior predictive distributions
J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.
View | DOI
 
[9]
2003 | Journal Article | IST-REx-ID: 4348
Stochastic mapping of morphological characters
J. Huelsenbeck, R. Nielsen, J.P. Bollback, Systematic Biology 52 (2003) 131–58.
View | DOI
 
[8]
2003 | Journal Article | IST-REx-ID: 4350
True and false gharials: A nuclear gene phylogeny of crocodylia
J. Harshman, C. Huddleston, J.P. Bollback, T. Parsons, M. Braun, Systematic Biology 52 (2003) 386–402.
View | DOI
 
[7]
2002 | Journal Article | IST-REx-ID: 4349
Bayesian model adequacy and choice in phylogenetics
J.P. Bollback, Molecular Biology and Evolution 19 (2002) 1171–80.
View | Download (ext.)
 
[6]
2002 | Journal Article | IST-REx-ID: 4347
Inferring the root of a phylogenetic tree
J. Huelsenbeck, J.P. Bollback, A. Levine, Systematic Biology 51 (2002) 32–43.
View | DOI
 
[5]
2001 | Book Chapter | IST-REx-ID: 3434
Application of the likelihood function in phylogenetic analysis
J. Huelsenbeck, J.P. Bollback, in:, D. Balding, M. Bishop, C. Cannings (Eds.), Handbook of Statistical Genetics, Wiley-Blackwell, 2001, pp. 415–439.
View | DOI
 
[4]
2001 | Journal Article | IST-REx-ID: 3439
Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi
J. Conn, J.P. Bollback, D. Onyabe, T. Robinson, R. Wilkerson, M. Povoa, Molecular Ecology Notes 1 (2001) 223–225.
View | DOI
 
[3]
2001 | Journal Article | IST-REx-ID: 4229
Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (Family Leviviridae)
J.P. Bollback, J. Huelsenbeck, Journal of Molecular Evolution 52 (2001) 117–128.
View | DOI
 
[2]
2001 | Journal Article | IST-REx-ID: 3438
Bayesian inference of phylogeny and its impact on evolutionary biology
J. Huelsenbeck, F. Ronquist, R. Nielsen, J.P. Bollback, Science 294 (2001) 2310–2314.
View | DOI
 
[1]
2001 | Journal Article | IST-REx-ID: 3440
Empirical and hierarchical Bayesian estimation of ancestral states
J. Huelsenbeck, J.P. Bollback, Systematic Biology 50 (2001) 351–366.
View | DOI
 

Search

Filter Publications

Display / Sort

Citation Style: Default

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