Jonathan P Bollback
Bollback Group
37 Publications
2022 | Journal Article | IST-REx-ID: 10736 | 
Lagator, Mato, Srdjan Sarikas, Magdalena Steinrueck, David Toledo-Aparicio, Jonathan P Bollback, Calin C Guet, and Gašper Tkačik. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.” ELife. eLife Sciences Publications, 2022. https://doi.org/10.7554/eLife.64543.
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 7652 |
Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution. Springer Nature, 2020. https://doi.org/10.1038/s41559-020-1132-7.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Journal Article | IST-REx-ID: 423 |
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” ELife. eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.32035.
[Published Version]
View
| Files available
| DOI
| WoS
2018 | Research Data Reference | IST-REx-ID: 9840 |
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “Data from: CRISPR-Based Herd Immunity Limits Phage Epidemics in Bacterial Populations.” Dryad, 2018. https://doi.org/10.5061/dryad.42n44.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2018 | Journal Article | IST-REx-ID: 67 |
Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution. Nature Publishing Group, 2018. https://doi.org/10.1038/s41559-018-0651-y.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Research Data | IST-REx-ID: 5585 |
Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 570 |
Lagator, Mato, Srdjan Sarikas, Hande Acar, Jonathan P Bollback, and Calin C Guet. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.” ELife. eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.28921.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 1077 |
Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” Journal of the Royal Society Interface. Royal Society of London, 2017. https://doi.org/10.1098/rsif.2016.0139.
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 954 |
Lagator, Mato, Tiago Paixao, Nicholas H Barton, Jonathan P Bollback, and Calin C Guet. “On the Mechanistic Nature of Epistasis in a Canonical Cis-Regulatory Element.” ELife. eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.25192.
[Published Version]
View
| Files available
| DOI
| WoS
2016 | Journal Article | IST-REx-ID: 1427 |
Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.” Molecular Biology and Evolution. Oxford University Press, 2016. https://doi.org/10.1093/molbev/msv269.
[Published Version]
View
| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9864 |
Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” The Royal Society, 2016. https://doi.org/10.6084/m9.figshare.4315652.v1.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 2042 |
Kupczok, Anne, and Jonathan P Bollback. “Motif Depletion in Bacteriophages Infecting Hosts with CRISPR Systems.” BMC Genomics. BioMed Central, 2014. https://doi.org/10.1186/1471-2164-15-663.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .” BMC Evolutionary Biology. BioMed Central, 2013. https://doi.org/10.1186/1471-2148-13-54.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus Weihenstephanensis.” Genome Announcements. American Society for Microbiology, 2013. https://doi.org/10.1128/genomeA.00216-13.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 500 |
Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” BMC Evolutionary Biology. BioMed Central, 2013. https://doi.org/10.1186/1471-2148-13-222.
[Published Version]
View
| Files available
| DOI
2010 | Journal Article | IST-REx-ID: 4358
Guinane, Caitriona, Nouri Ben Zakour, Maria Tormo Mas, Lucy Weinert, Bethan Lowder, Robyn Cartwright, Davida Smyth, et al. “Evolutionary Genomics of Staphylococcus Aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.” Genome Biology and Evolution. Oxford University Press, 2010. https://doi.org/10.1093/gbe/evq031.
View
| DOI
2009 | Journal Article | IST-REx-ID: 4357
Bollback, Jonathan P, and John Huelsenbeck. “Parallel Genetic Evolution within and between Bacteriophage Species of Varying Degrees of Divergence.” Genetics. Genetics Society of America, 2009. https://doi.org/10.1534/genetics.107.085225.
View
| DOI
2008 | Journal Article | IST-REx-ID: 3435 |
Bollback, Jonathan P, Thomas York, and Rasmus Nielsen. “Estimation of 2Nes From Temporal Allele Frequency Data.” Genetics. Genetics Society of America, 2008. https://doi.org/10.1534/genetics.107.085019.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 4353
Binladen, Jonas, M Thomas Gilbert, Jonathan P Bollback, Frank Panitz, Christian Bendixen, Rasmus Nielsen, and Eske Willerslev. “The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing.” PLoS One. Public Library of Science, 2007. https://doi.org/10.1371/journal.pone.0000197.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4356
Petersen, Lise, Jonathan P Bollback, Matt Dimmic, Melissa Hubisz, and Rasmus Nielsen. “Genes under Positive Selection in Escherichia Coli.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.6254707.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4355
Bollback, Jonathan P, and John Huelsenbeck. “Clonal Interference Is Alleviated by High Mutation Rates in Large Populations.” Molecular Biology and Evolution. Oxford University Press, 2007. https://doi.org/10.1093/molbev/msm056.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4354
Freyhult, Eva, Jonathan P Bollback, and Paul Gardner. “Exploring Genomic Dark Matter: A Critical Assessment of the Performance of Homology Search Methods on Noncoding RNA.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.5890907.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 3436
Reynolds, Sheila, Katie Dryer, Jonathan P Bollback, J Albert Uy, Gail Patricelli, Timothy Robson, Gerald Borgia, and Michael Braun. “Behavioral Paternity Predicts Genetic Paternity in Satin Bowerbirds, a Species with a Non-Resource-Based Mating System.” The Auk. University of California Press, 2007. https://doi.org/10.1642/0004-8038(2007)124[857:BPPGPI]2.0.CO;2.
View
| DOI
2007 | Book Chapter | IST-REx-ID: 3432
Bollback, Jonathan P, Paul Gardner, and Rasmus Nielsen. “Estimating the History of Mutations on a Phylogeny.” In Ancestral Sequence Reconstruction, edited by David Liberles, 69–79. Oxford University Press, 2007. https://doi.org/10.1093/acprof:oso/9780199299188.003.0006.
View
| DOI
2006 | Journal Article | IST-REx-ID: 4352
Conn, Jan, Joseph Vineis, Jonathan P Bollback, David Onyabe, Richard Wilkerson, and Marinete Povoa. “Population Structure of the Malaria Vector Anopheles Darlingi in a Malaria-Endemic Region of Eastern Amazonian Brazil.” The American Journal of Tropical Medicine and Hygiene. American Society of Tropical Medicine and Hygiene, 2006.
View
| Download (ext.)
2006 | Journal Article | IST-REx-ID: 4351
Bollback, Jonathan P. “SIMMAP: Stochastic Character Mapping of Discrete Traits on Phylogenies.” BMC Bioinformatics. BioMed Central, 2006. https://doi.org/10.1186/1471-2105-7-88.
View
| DOI
2006 | Journal Article | IST-REx-ID: 3437
Betancourt, Andrea, and Jonathan P Bollback. “Fitness Effects of Beneficial Mutations: The Mutational Landscape Model in Experimental Evolution.” Current Opinion in Genetics & Development. Elsevier, 2006. https://doi.org/10.1016/j.gde.2006.10.006.
View
| DOI
2005 | Book Chapter | IST-REx-ID: 3433
Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.” In Statistical Methods in Molecular Evolution, edited by Rasmus Nielsen, 439–62. Springer, 2005. https://doi.org/10.1007/0-387-27733-1.
View
| DOI
2003 | Journal Article | IST-REx-ID: 4350
Harshman, John, Christopher Huddleston, Jonathan P Bollback, Thomas Parsons, and Michael Braun. “True and False Gharials: A Nuclear Gene Phylogeny of Crocodylia.” Systematic Biology. Oxford University Press, 2003. https://doi.org/10.1080/10635150390197028.
View
| DOI
| PubMed | Europe PMC
2003 | Journal Article | IST-REx-ID: 4348
Huelsenbeck, John, Rasmus Nielsen, and Jonathan P Bollback. “Stochastic Mapping of Morphological Characters.” Systematic Biology. Oxford University Press, 2003. https://doi.org/10.1080/10635150390192780.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4349
Bollback, Jonathan P. “Bayesian Model Adequacy and Choice in Phylogenetics.” Molecular Biology and Evolution. Oxford University Press, 2002. https://doi.org/10.1093/oxfordjournals.molbev.a004175.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4347
Huelsenbeck, John, Jonathan P Bollback, and Amy Levine. “Inferring the Root of a Phylogenetic Tree.” Systematic Biology. Oxford University Press, 2002. https://doi.org/10.1080/106351502753475862.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 4229
Bollback, Jonathan P, and John Huelsenbeck. “Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae).” Journal of Molecular Evolution. Springer, 2001. https://doi.org/10.1007/s002390010140.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3439
Conn, Jan, Jonathan P Bollback, David Onyabe, Tessa Robinson, Richard Wilkerson, and Marinete Povoa. “Isolation of Polymorphic Microsatellite Markers from the Malaria Vector Anopheles Darlingi.” Molecular Ecology Notes. Wiley-Blackwell, 2001. https://doi.org/ 10.1046/j.1471-8278.2001.00078.x.
View
| DOI
2001 | Journal Article | IST-REx-ID: 3440
Huelsenbeck, John, and Jonathan P Bollback. “Empirical and Hierarchical Bayesian Estimation of Ancestral States.” Systematic Biology. Oxford University Press, 2001. https://doi.org/10.1080/10635150119871.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3438
Huelsenbeck, John, Fredrik Ronquist, Rasmus Nielsen, and Jonathan P Bollback. “Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology.” Science. American Association for the Advancement of Science, 2001. https://doi.org/10.1126/science.1065889.
View
| DOI
| PubMed | Europe PMC
2001 | Book Chapter | IST-REx-ID: 3434
Huelsenbeck, John, and Jonathan P Bollback. “Application of the Likelihood Function in Phylogenetic Analysis.” In Handbook of Statistical Genetics, edited by David Balding, Martin Bishop, and Chriss Cannings, 415–39. Wiley-Blackwell, 2001. https://doi.org/10.1002/9780470061619.ch15.
View
| DOI
37 Publications
2022 | Journal Article | IST-REx-ID: 10736 |
Lagator, Mato, Srdjan Sarikas, Magdalena Steinrueck, David Toledo-Aparicio, Jonathan P Bollback, Calin C Guet, and Gašper Tkačik. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.” ELife. eLife Sciences Publications, 2022. https://doi.org/10.7554/eLife.64543.
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 7652 |
Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution. Springer Nature, 2020. https://doi.org/10.1038/s41559-020-1132-7.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Journal Article | IST-REx-ID: 423 |
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” ELife. eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.32035.
[Published Version]
View
| Files available
| DOI
| WoS
2018 | Research Data Reference | IST-REx-ID: 9840 |
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “Data from: CRISPR-Based Herd Immunity Limits Phage Epidemics in Bacterial Populations.” Dryad, 2018. https://doi.org/10.5061/dryad.42n44.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2018 | Journal Article | IST-REx-ID: 67 |
Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution. Nature Publishing Group, 2018. https://doi.org/10.1038/s41559-018-0651-y.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Research Data | IST-REx-ID: 5585 |
Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 570 |
Lagator, Mato, Srdjan Sarikas, Hande Acar, Jonathan P Bollback, and Calin C Guet. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.” ELife. eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.28921.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 1077 |
Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” Journal of the Royal Society Interface. Royal Society of London, 2017. https://doi.org/10.1098/rsif.2016.0139.
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 954 |
Lagator, Mato, Tiago Paixao, Nicholas H Barton, Jonathan P Bollback, and Calin C Guet. “On the Mechanistic Nature of Epistasis in a Canonical Cis-Regulatory Element.” ELife. eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.25192.
[Published Version]
View
| Files available
| DOI
| WoS
2016 | Journal Article | IST-REx-ID: 1427 |
Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.” Molecular Biology and Evolution. Oxford University Press, 2016. https://doi.org/10.1093/molbev/msv269.
[Published Version]
View
| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9864 |
Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” The Royal Society, 2016. https://doi.org/10.6084/m9.figshare.4315652.v1.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 2042 |
Kupczok, Anne, and Jonathan P Bollback. “Motif Depletion in Bacteriophages Infecting Hosts with CRISPR Systems.” BMC Genomics. BioMed Central, 2014. https://doi.org/10.1186/1471-2164-15-663.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .” BMC Evolutionary Biology. BioMed Central, 2013. https://doi.org/10.1186/1471-2148-13-54.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus Weihenstephanensis.” Genome Announcements. American Society for Microbiology, 2013. https://doi.org/10.1128/genomeA.00216-13.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 500 |
Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” BMC Evolutionary Biology. BioMed Central, 2013. https://doi.org/10.1186/1471-2148-13-222.
[Published Version]
View
| Files available
| DOI
2010 | Journal Article | IST-REx-ID: 4358
Guinane, Caitriona, Nouri Ben Zakour, Maria Tormo Mas, Lucy Weinert, Bethan Lowder, Robyn Cartwright, Davida Smyth, et al. “Evolutionary Genomics of Staphylococcus Aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.” Genome Biology and Evolution. Oxford University Press, 2010. https://doi.org/10.1093/gbe/evq031.
View
| DOI
2009 | Journal Article | IST-REx-ID: 4357
Bollback, Jonathan P, and John Huelsenbeck. “Parallel Genetic Evolution within and between Bacteriophage Species of Varying Degrees of Divergence.” Genetics. Genetics Society of America, 2009. https://doi.org/10.1534/genetics.107.085225.
View
| DOI
2008 | Journal Article | IST-REx-ID: 3435 |
Bollback, Jonathan P, Thomas York, and Rasmus Nielsen. “Estimation of 2Nes From Temporal Allele Frequency Data.” Genetics. Genetics Society of America, 2008. https://doi.org/10.1534/genetics.107.085019.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 4353
Binladen, Jonas, M Thomas Gilbert, Jonathan P Bollback, Frank Panitz, Christian Bendixen, Rasmus Nielsen, and Eske Willerslev. “The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing.” PLoS One. Public Library of Science, 2007. https://doi.org/10.1371/journal.pone.0000197.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4356
Petersen, Lise, Jonathan P Bollback, Matt Dimmic, Melissa Hubisz, and Rasmus Nielsen. “Genes under Positive Selection in Escherichia Coli.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.6254707.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4355
Bollback, Jonathan P, and John Huelsenbeck. “Clonal Interference Is Alleviated by High Mutation Rates in Large Populations.” Molecular Biology and Evolution. Oxford University Press, 2007. https://doi.org/10.1093/molbev/msm056.
View
| DOI
2007 | Journal Article | IST-REx-ID: 4354
Freyhult, Eva, Jonathan P Bollback, and Paul Gardner. “Exploring Genomic Dark Matter: A Critical Assessment of the Performance of Homology Search Methods on Noncoding RNA.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.5890907.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 3436
Reynolds, Sheila, Katie Dryer, Jonathan P Bollback, J Albert Uy, Gail Patricelli, Timothy Robson, Gerald Borgia, and Michael Braun. “Behavioral Paternity Predicts Genetic Paternity in Satin Bowerbirds, a Species with a Non-Resource-Based Mating System.” The Auk. University of California Press, 2007. https://doi.org/10.1642/0004-8038(2007)124[857:BPPGPI]2.0.CO;2.
View
| DOI
2007 | Book Chapter | IST-REx-ID: 3432
Bollback, Jonathan P, Paul Gardner, and Rasmus Nielsen. “Estimating the History of Mutations on a Phylogeny.” In Ancestral Sequence Reconstruction, edited by David Liberles, 69–79. Oxford University Press, 2007. https://doi.org/10.1093/acprof:oso/9780199299188.003.0006.
View
| DOI
2006 | Journal Article | IST-REx-ID: 4352
Conn, Jan, Joseph Vineis, Jonathan P Bollback, David Onyabe, Richard Wilkerson, and Marinete Povoa. “Population Structure of the Malaria Vector Anopheles Darlingi in a Malaria-Endemic Region of Eastern Amazonian Brazil.” The American Journal of Tropical Medicine and Hygiene. American Society of Tropical Medicine and Hygiene, 2006.
View
| Download (ext.)
2006 | Journal Article | IST-REx-ID: 4351
Bollback, Jonathan P. “SIMMAP: Stochastic Character Mapping of Discrete Traits on Phylogenies.” BMC Bioinformatics. BioMed Central, 2006. https://doi.org/10.1186/1471-2105-7-88.
View
| DOI
2006 | Journal Article | IST-REx-ID: 3437
Betancourt, Andrea, and Jonathan P Bollback. “Fitness Effects of Beneficial Mutations: The Mutational Landscape Model in Experimental Evolution.” Current Opinion in Genetics & Development. Elsevier, 2006. https://doi.org/10.1016/j.gde.2006.10.006.
View
| DOI
2005 | Book Chapter | IST-REx-ID: 3433
Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.” In Statistical Methods in Molecular Evolution, edited by Rasmus Nielsen, 439–62. Springer, 2005. https://doi.org/10.1007/0-387-27733-1.
View
| DOI
2003 | Journal Article | IST-REx-ID: 4350
Harshman, John, Christopher Huddleston, Jonathan P Bollback, Thomas Parsons, and Michael Braun. “True and False Gharials: A Nuclear Gene Phylogeny of Crocodylia.” Systematic Biology. Oxford University Press, 2003. https://doi.org/10.1080/10635150390197028.
View
| DOI
| PubMed | Europe PMC
2003 | Journal Article | IST-REx-ID: 4348
Huelsenbeck, John, Rasmus Nielsen, and Jonathan P Bollback. “Stochastic Mapping of Morphological Characters.” Systematic Biology. Oxford University Press, 2003. https://doi.org/10.1080/10635150390192780.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4349
Bollback, Jonathan P. “Bayesian Model Adequacy and Choice in Phylogenetics.” Molecular Biology and Evolution. Oxford University Press, 2002. https://doi.org/10.1093/oxfordjournals.molbev.a004175.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4347
Huelsenbeck, John, Jonathan P Bollback, and Amy Levine. “Inferring the Root of a Phylogenetic Tree.” Systematic Biology. Oxford University Press, 2002. https://doi.org/10.1080/106351502753475862.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 4229
Bollback, Jonathan P, and John Huelsenbeck. “Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae).” Journal of Molecular Evolution. Springer, 2001. https://doi.org/10.1007/s002390010140.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3439
Conn, Jan, Jonathan P Bollback, David Onyabe, Tessa Robinson, Richard Wilkerson, and Marinete Povoa. “Isolation of Polymorphic Microsatellite Markers from the Malaria Vector Anopheles Darlingi.” Molecular Ecology Notes. Wiley-Blackwell, 2001. https://doi.org/ 10.1046/j.1471-8278.2001.00078.x.
View
| DOI
2001 | Journal Article | IST-REx-ID: 3440
Huelsenbeck, John, and Jonathan P Bollback. “Empirical and Hierarchical Bayesian Estimation of Ancestral States.” Systematic Biology. Oxford University Press, 2001. https://doi.org/10.1080/10635150119871.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3438
Huelsenbeck, John, Fredrik Ronquist, Rasmus Nielsen, and Jonathan P Bollback. “Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology.” Science. American Association for the Advancement of Science, 2001. https://doi.org/10.1126/science.1065889.
View
| DOI
| PubMed | Europe PMC
2001 | Book Chapter | IST-REx-ID: 3434
Huelsenbeck, John, and Jonathan P Bollback. “Application of the Likelihood Function in Phylogenetic Analysis.” In Handbook of Statistical Genetics, edited by David Balding, Martin Bishop, and Chriss Cannings, 415–39. Wiley-Blackwell, 2001. https://doi.org/10.1002/9780470061619.ch15.
View
| DOI